Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_232

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_231 and Pf6N2E2_232 are separated by 55 nucleotidesPf6N2E2_232 and Pf6N2E2_233 are separated by 144 nucleotidesPf6N2E2_233 and Pf6N2E2_234 are separated by 229 nucleotides Pf6N2E2_231 - FIG00956946: hypothetical protein, at 293,902 to 295,083 _231 Pf6N2E2_232 - Protein involved in meta-pathway of phenol degradation, at 295,139 to 296,131 _232 Pf6N2E2_233 - Transcriptional regulator, TetR family, at 296,276 to 296,896 _233 Pf6N2E2_234 - FIG00454312: hypothetical protein, at 297,126 to 297,500 _234 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 294.151 kb on + strand, within Pf6N2E2_231at 294.152 kb on - strand, within Pf6N2E2_231at 294.152 kb on - strand, within Pf6N2E2_231at 294.155 kb on + strand, within Pf6N2E2_231at 294.180 kb on + strand, within Pf6N2E2_231at 294.181 kb on - strand, within Pf6N2E2_231at 294.227 kb on + strand, within Pf6N2E2_231at 294.227 kb on + strand, within Pf6N2E2_231at 294.287 kb on - strand, within Pf6N2E2_231at 294.413 kb on + strand, within Pf6N2E2_231at 294.413 kb on + strand, within Pf6N2E2_231at 294.413 kb on + strand, within Pf6N2E2_231at 294.414 kb on - strand, within Pf6N2E2_231at 295.129 kb on + strandat 295.174 kb on - strandat 295.212 kb on + strandat 295.212 kb on + strandat 295.212 kb on + strandat 295.212 kb on + strandat 295.212 kb on + strandat 295.213 kb on - strandat 295.213 kb on - strandat 295.213 kb on - strandat 295.341 kb on + strand, within Pf6N2E2_232at 295.341 kb on + strand, within Pf6N2E2_232at 295.342 kb on - strand, within Pf6N2E2_232at 295.344 kb on + strand, within Pf6N2E2_232at 295.345 kb on - strand, within Pf6N2E2_232at 295.384 kb on - strand, within Pf6N2E2_232at 295.384 kb on - strand, within Pf6N2E2_232at 295.494 kb on + strand, within Pf6N2E2_232at 295.494 kb on + strand, within Pf6N2E2_232at 295.495 kb on - strand, within Pf6N2E2_232at 295.495 kb on - strand, within Pf6N2E2_232at 295.495 kb on - strand, within Pf6N2E2_232at 295.495 kb on - strand, within Pf6N2E2_232at 295.500 kb on + strand, within Pf6N2E2_232at 295.500 kb on + strand, within Pf6N2E2_232at 295.500 kb on + strand, within Pf6N2E2_232at 295.612 kb on - strand, within Pf6N2E2_232at 295.612 kb on - strand, within Pf6N2E2_232at 295.845 kb on + strand, within Pf6N2E2_232at 295.846 kb on - strand, within Pf6N2E2_232at 295.846 kb on - strand, within Pf6N2E2_232at 295.848 kb on + strand, within Pf6N2E2_232at 295.848 kb on + strand, within Pf6N2E2_232at 295.849 kb on - strand, within Pf6N2E2_232at 295.849 kb on - strand, within Pf6N2E2_232at 295.849 kb on - strand, within Pf6N2E2_232at 295.956 kb on + strand, within Pf6N2E2_232at 295.956 kb on + strand, within Pf6N2E2_232at 295.957 kb on - strand, within Pf6N2E2_232at 295.957 kb on - strand, within Pf6N2E2_232at 295.957 kb on - strand, within Pf6N2E2_232at 296.190 kb on + strandat 296.190 kb on + strandat 296.191 kb on - strandat 296.376 kb on + strand, within Pf6N2E2_233at 296.376 kb on + strand, within Pf6N2E2_233at 296.377 kb on - strand, within Pf6N2E2_233at 296.377 kb on - strand, within Pf6N2E2_233at 296.649 kb on + strand, within Pf6N2E2_233at 296.649 kb on + strand, within Pf6N2E2_233at 296.650 kb on - strand, within Pf6N2E2_233at 296.650 kb on - strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.692 kb on - strand, within Pf6N2E2_233at 296.692 kb on - strand, within Pf6N2E2_233at 296.692 kb on - strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.734 kb on - strand, within Pf6N2E2_233at 296.734 kb on - strand, within Pf6N2E2_233at 296.734 kb on - strand, within Pf6N2E2_233at 296.734 kb on - strand, within Pf6N2E2_233at 296.738 kb on - strand, within Pf6N2E2_233at 296.792 kb on + strand, within Pf6N2E2_233at 296.792 kb on + strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.806 kb on + strand, within Pf6N2E2_233at 296.833 kb on + strand, within Pf6N2E2_233at 296.833 kb on + strand, within Pf6N2E2_233at 296.834 kb on - strand, within Pf6N2E2_233at 296.926 kb on + strandat 296.926 kb on + strandat 296.927 kb on - strandat 296.927 kb on - strandat 297.081 kb on + strandat 297.081 kb on + strandat 297.081 kb on + strandat 297.081 kb on + strandat 297.114 kb on - strandat 297.114 kb on - strandat 297.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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294,151 + Pf6N2E2_231 0.21 -0.9
294,152 - Pf6N2E2_231 0.21 +0.4
294,152 - Pf6N2E2_231 0.21 -2.2
294,155 + Pf6N2E2_231 0.21 -0.4
294,180 + Pf6N2E2_231 0.24 -1.9
294,181 - Pf6N2E2_231 0.24 +0.8
294,227 + Pf6N2E2_231 0.27 -2.4
294,227 + Pf6N2E2_231 0.27 -0.8
294,287 - Pf6N2E2_231 0.33 +0.2
294,413 + Pf6N2E2_231 0.43 -0.4
294,413 + Pf6N2E2_231 0.43 +0.4
294,413 + Pf6N2E2_231 0.43 +1.1
294,414 - Pf6N2E2_231 0.43 +0.9
295,129 + -0.0
295,174 - +0.1
295,212 + +0.5
295,212 + +2.1
295,212 + +0.9
295,212 + +0.6
295,212 + -0.3
295,213 - +0.6
295,213 - -0.5
295,213 - +0.5
295,341 + Pf6N2E2_232 0.20 -1.1
295,341 + Pf6N2E2_232 0.20 +0.4
295,342 - Pf6N2E2_232 0.20 +1.1
295,344 + Pf6N2E2_232 0.21 +0.5
295,345 - Pf6N2E2_232 0.21 +0.1
295,384 - Pf6N2E2_232 0.25 +2.4
295,384 - Pf6N2E2_232 0.25 -1.4
295,494 + Pf6N2E2_232 0.36 -0.1
295,494 + Pf6N2E2_232 0.36 +0.3
295,495 - Pf6N2E2_232 0.36 -2.7
295,495 - Pf6N2E2_232 0.36 +1.0
295,495 - Pf6N2E2_232 0.36 +0.3
295,495 - Pf6N2E2_232 0.36 -2.0
295,500 + Pf6N2E2_232 0.36 +0.6
295,500 + Pf6N2E2_232 0.36 -0.5
295,500 + Pf6N2E2_232 0.36 +0.3
295,612 - Pf6N2E2_232 0.48 +2.5
295,612 - Pf6N2E2_232 0.48 +1.9
295,845 + Pf6N2E2_232 0.71 -0.1
295,846 - Pf6N2E2_232 0.71 -1.2
295,846 - Pf6N2E2_232 0.71 -1.4
295,848 + Pf6N2E2_232 0.71 +1.3
295,848 + Pf6N2E2_232 0.71 +1.0
295,849 - Pf6N2E2_232 0.72 +0.6
295,849 - Pf6N2E2_232 0.72 -0.5
295,849 - Pf6N2E2_232 0.72 +1.1
295,956 + Pf6N2E2_232 0.82 -0.0
295,956 + Pf6N2E2_232 0.82 +0.4
295,957 - Pf6N2E2_232 0.82 +0.6
295,957 - Pf6N2E2_232 0.82 +1.2
295,957 - Pf6N2E2_232 0.82 +0.7
296,190 + +1.1
296,190 + +0.1
296,191 - +0.3
296,376 + Pf6N2E2_233 0.16 +2.5
296,376 + Pf6N2E2_233 0.16 -0.2
296,377 - Pf6N2E2_233 0.16 -0.2
296,377 - Pf6N2E2_233 0.16 +0.1
296,649 + Pf6N2E2_233 0.60 -0.6
296,649 + Pf6N2E2_233 0.60 -2.9
296,650 - Pf6N2E2_233 0.60 -0.2
296,650 - Pf6N2E2_233 0.60 +1.2
296,691 + Pf6N2E2_233 0.67 +1.1
296,691 + Pf6N2E2_233 0.67 +0.8
296,691 + Pf6N2E2_233 0.67 -1.7
296,691 + Pf6N2E2_233 0.67 +0.8
296,691 + Pf6N2E2_233 0.67 -3.6
296,692 - Pf6N2E2_233 0.67 +0.4
296,692 - Pf6N2E2_233 0.67 -0.7
296,692 - Pf6N2E2_233 0.67 +0.2
296,733 + Pf6N2E2_233 0.74 -1.8
296,733 + Pf6N2E2_233 0.74 +0.7
296,733 + Pf6N2E2_233 0.74 +0.8
296,733 + Pf6N2E2_233 0.74 +0.6
296,733 + Pf6N2E2_233 0.74 +2.2
296,733 + Pf6N2E2_233 0.74 -0.7
296,734 - Pf6N2E2_233 0.74 -0.4
296,734 - Pf6N2E2_233 0.74 -0.1
296,734 - Pf6N2E2_233 0.74 +0.4
296,734 - Pf6N2E2_233 0.74 +0.2
296,738 - Pf6N2E2_233 0.74 +1.5
296,792 + Pf6N2E2_233 0.83 +0.5
296,792 + Pf6N2E2_233 0.83 -0.1
296,793 - Pf6N2E2_233 0.83 -1.1
296,793 - Pf6N2E2_233 0.83 +1.7
296,793 - Pf6N2E2_233 0.83 -1.8
296,793 - Pf6N2E2_233 0.83 +0.3
296,793 - Pf6N2E2_233 0.83 -0.7
296,793 - Pf6N2E2_233 0.83 +0.7
296,793 - Pf6N2E2_233 0.83 +0.5
296,806 + Pf6N2E2_233 0.85 -1.7
296,833 + Pf6N2E2_233 0.90 +0.8
296,833 + Pf6N2E2_233 0.90 +0.2
296,834 - Pf6N2E2_233 0.90 +1.7
296,926 + +0.8
296,926 + +0.5
296,927 - -0.2
296,927 - -0.3
297,081 + -0.4
297,081 + +0.9
297,081 + +0.0
297,081 + -0.5
297,114 - -0.2
297,114 - +0.1
297,114 - -0.7

Or see this region's nucleotide sequence