Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2022 and Pf6N2E2_2023 are separated by 184 nucleotides Pf6N2E2_2023 and Pf6N2E2_2024 are separated by 7 nucleotides Pf6N2E2_2024 and Pf6N2E2_2025 are separated by 613 nucleotides
Pf6N2E2_2022 - BarA-associated response regulator UvrY (= GacA = SirA), at 2,411,396 to 2,411,980
_2022
Pf6N2E2_2023 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 2,412,165 to 2,412,599
_2023
Pf6N2E2_2024 - Hydrolase, carbon-nitrogen family, at 2,412,607 to 2,413,368
_2024
Pf6N2E2_2025 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 2,413,982 to 2,415,052
_2025
Position (kb)
2412
2413
2414 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2411.667 kb on + strand, within Pf6N2E2_2022 at 2411.667 kb on + strand, within Pf6N2E2_2022 at 2411.667 kb on + strand, within Pf6N2E2_2022 at 2411.667 kb on + strand, within Pf6N2E2_2022 at 2411.667 kb on + strand, within Pf6N2E2_2022 at 2411.668 kb on - strand, within Pf6N2E2_2022 at 2411.668 kb on - strand, within Pf6N2E2_2022 at 2411.951 kb on + strand at 2411.951 kb on + strand at 2411.952 kb on - strand at 2411.986 kb on + strand at 2411.986 kb on + strand at 2411.987 kb on - strand at 2411.987 kb on - strand at 2412.032 kb on - strand at 2412.083 kb on - strand at 2412.106 kb on - strand at 2412.122 kb on + strand at 2412.122 kb on + strand at 2412.123 kb on - strand at 2412.238 kb on + strand, within Pf6N2E2_2023 at 2412.238 kb on + strand, within Pf6N2E2_2023 at 2412.238 kb on + strand, within Pf6N2E2_2023 at 2412.239 kb on - strand, within Pf6N2E2_2023 at 2412.366 kb on + strand, within Pf6N2E2_2023 at 2412.385 kb on + strand, within Pf6N2E2_2023 at 2412.385 kb on + strand, within Pf6N2E2_2023 at 2412.385 kb on + strand, within Pf6N2E2_2023 at 2412.385 kb on + strand, within Pf6N2E2_2023 at 2412.385 kb on + strand, within Pf6N2E2_2023 at 2412.386 kb on - strand, within Pf6N2E2_2023 at 2412.386 kb on - strand, within Pf6N2E2_2023 at 2412.386 kb on - strand, within Pf6N2E2_2023 at 2412.386 kb on - strand, within Pf6N2E2_2023 at 2412.386 kb on - strand, within Pf6N2E2_2023 at 2412.386 kb on - strand, within Pf6N2E2_2023 at 2412.520 kb on + strand, within Pf6N2E2_2023 at 2412.520 kb on + strand, within Pf6N2E2_2023 at 2412.520 kb on + strand, within Pf6N2E2_2023 at 2412.521 kb on - strand, within Pf6N2E2_2023 at 2412.812 kb on + strand, within Pf6N2E2_2024 at 2412.813 kb on - strand, within Pf6N2E2_2024 at 2412.813 kb on - strand, within Pf6N2E2_2024 at 2412.813 kb on - strand, within Pf6N2E2_2024 at 2412.842 kb on + strand, within Pf6N2E2_2024 at 2412.842 kb on + strand, within Pf6N2E2_2024 at 2412.875 kb on + strand, within Pf6N2E2_2024 at 2412.876 kb on - strand, within Pf6N2E2_2024 at 2412.876 kb on - strand, within Pf6N2E2_2024 at 2412.876 kb on - strand, within Pf6N2E2_2024 at 2412.882 kb on + strand, within Pf6N2E2_2024 at 2413.038 kb on - strand, within Pf6N2E2_2024 at 2413.038 kb on - strand, within Pf6N2E2_2024 at 2413.246 kb on + strand, within Pf6N2E2_2024 at 2413.409 kb on + strand at 2413.410 kb on - strand at 2413.490 kb on + strand at 2413.490 kb on + strand at 2413.493 kb on + strand at 2413.493 kb on + strand at 2413.493 kb on + strand at 2413.494 kb on - strand at 2413.494 kb on - strand at 2413.494 kb on - strand at 2413.494 kb on - strand at 2413.494 kb on - strand at 2413.617 kb on + strand at 2413.790 kb on + strand at 2413.790 kb on + strand at 2413.791 kb on - strand at 2413.791 kb on - strand at 2413.799 kb on + strand at 2413.799 kb on + strand at 2413.799 kb on + strand at 2413.799 kb on + strand at 2413.799 kb on + strand at 2413.800 kb on - strand at 2413.800 kb on - strand at 2413.800 kb on - strand at 2413.800 kb on - strand at 2413.800 kb on - strand at 2413.800 kb on - strand at 2413.800 kb on - strand at 2413.835 kb on - strand at 2413.879 kb on + strand at 2413.934 kb on + strand at 2413.934 kb on + strand at 2413.934 kb on + strand at 2413.935 kb on - strand at 2414.219 kb on + strand, within Pf6N2E2_2025 at 2414.286 kb on - strand, within Pf6N2E2_2025 at 2414.286 kb on - strand, within Pf6N2E2_2025 at 2414.330 kb on + strand, within Pf6N2E2_2025
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM remove 2,411,667 + Pf6N2E2_2022 0.46 -0.8 2,411,667 + Pf6N2E2_2022 0.46 -2.0 2,411,667 + Pf6N2E2_2022 0.46 -2.4 2,411,667 + Pf6N2E2_2022 0.46 +0.9 2,411,667 + Pf6N2E2_2022 0.46 -0.3 2,411,668 - Pf6N2E2_2022 0.46 -0.3 2,411,668 - Pf6N2E2_2022 0.46 -1.5 2,411,951 + +0.1 2,411,951 + -1.1 2,411,952 - -3.8 2,411,986 + -1.9 2,411,986 + -2.0 2,411,987 - -0.4 2,411,987 - +0.1 2,412,032 - +0.9 2,412,083 - +1.6 2,412,106 - -0.8 2,412,122 + -1.1 2,412,122 + -0.6 2,412,123 - -0.9 2,412,238 + Pf6N2E2_2023 0.17 -3.7 2,412,238 + Pf6N2E2_2023 0.17 -0.3 2,412,238 + Pf6N2E2_2023 0.17 +2.0 2,412,239 - Pf6N2E2_2023 0.17 +2.5 2,412,366 + Pf6N2E2_2023 0.46 +0.2 2,412,385 + Pf6N2E2_2023 0.51 -2.0 2,412,385 + Pf6N2E2_2023 0.51 +1.4 2,412,385 + Pf6N2E2_2023 0.51 -0.6 2,412,385 + Pf6N2E2_2023 0.51 -0.4 2,412,385 + Pf6N2E2_2023 0.51 -0.8 2,412,386 - Pf6N2E2_2023 0.51 -2.1 2,412,386 - Pf6N2E2_2023 0.51 +0.1 2,412,386 - Pf6N2E2_2023 0.51 +0.2 2,412,386 - Pf6N2E2_2023 0.51 +0.9 2,412,386 - Pf6N2E2_2023 0.51 -2.6 2,412,386 - Pf6N2E2_2023 0.51 +0.0 2,412,520 + Pf6N2E2_2023 0.82 +1.0 2,412,520 + Pf6N2E2_2023 0.82 +0.6 2,412,520 + Pf6N2E2_2023 0.82 +0.6 2,412,521 - Pf6N2E2_2023 0.82 +0.3 2,412,812 + Pf6N2E2_2024 0.27 +0.2 2,412,813 - Pf6N2E2_2024 0.27 +1.6 2,412,813 - Pf6N2E2_2024 0.27 +0.4 2,412,813 - Pf6N2E2_2024 0.27 -0.8 2,412,842 + Pf6N2E2_2024 0.31 -0.3 2,412,842 + Pf6N2E2_2024 0.31 +0.1 2,412,875 + Pf6N2E2_2024 0.35 +1.5 2,412,876 - Pf6N2E2_2024 0.35 +0.5 2,412,876 - Pf6N2E2_2024 0.35 +1.7 2,412,876 - Pf6N2E2_2024 0.35 +0.5 2,412,882 + Pf6N2E2_2024 0.36 -0.1 2,413,038 - Pf6N2E2_2024 0.57 +1.5 2,413,038 - Pf6N2E2_2024 0.57 +1.8 2,413,246 + Pf6N2E2_2024 0.84 +1.2 2,413,409 + -1.3 2,413,410 - -1.0 2,413,490 + -2.7 2,413,490 + +1.9 2,413,493 + -1.7 2,413,493 + -0.3 2,413,493 + -0.3 2,413,494 - -0.6 2,413,494 - -0.6 2,413,494 - -3.6 2,413,494 - -0.1 2,413,494 - -3.0 2,413,617 + -1.6 2,413,790 + +0.3 2,413,790 + +1.2 2,413,791 - -1.4 2,413,791 - -3.1 2,413,799 + +2.5 2,413,799 + +1.4 2,413,799 + -2.1 2,413,799 + +0.7 2,413,799 + +0.4 2,413,800 - -2.1 2,413,800 - -1.0 2,413,800 - +0.3 2,413,800 - -1.7 2,413,800 - -0.7 2,413,800 - -1.1 2,413,800 - -1.2 2,413,835 - -1.8 2,413,879 + +0.3 2,413,934 + +0.8 2,413,934 + +1.7 2,413,934 + -3.8 2,413,935 - -2.1 2,414,219 + Pf6N2E2_2025 0.22 -0.8 2,414,286 - Pf6N2E2_2025 0.28 -3.1 2,414,286 - Pf6N2E2_2025 0.28 -3.1 2,414,330 + Pf6N2E2_2025 0.32 +0.7
Or see this region's nucleotide sequence