Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1237

Experiment: Aluminum chloride 4 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1236 and Pf6N2E2_1237 are separated by 132 nucleotidesPf6N2E2_1237 and Pf6N2E2_1238 are separated by 283 nucleotidesPf6N2E2_1238 and Pf6N2E2_1239 are separated by 270 nucleotides Pf6N2E2_1236 - Transcriptional regulator, LysR family, at 1,449,005 to 1,449,901 _1236 Pf6N2E2_1237 - Putative transport protein, at 1,450,034 to 1,451,497 _1237 Pf6N2E2_1238 - hypothetical protein, at 1,451,781 to 1,451,969 _1238 Pf6N2E2_1239 - Putative TEGT family carrier/transport protein, at 1,452,240 to 1,452,911 _1239 Position (kb) 1450 1451 1452Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1449.163 kb on - strand, within Pf6N2E2_1236at 1449.425 kb on + strand, within Pf6N2E2_1236at 1449.425 kb on + strand, within Pf6N2E2_1236at 1449.426 kb on - strand, within Pf6N2E2_1236at 1449.941 kb on + strandat 1449.942 kb on - strandat 1450.236 kb on - strand, within Pf6N2E2_1237at 1450.236 kb on - strand, within Pf6N2E2_1237at 1450.347 kb on + strand, within Pf6N2E2_1237at 1450.488 kb on + strand, within Pf6N2E2_1237at 1450.489 kb on - strand, within Pf6N2E2_1237at 1450.622 kb on + strand, within Pf6N2E2_1237at 1450.715 kb on + strand, within Pf6N2E2_1237at 1450.715 kb on + strand, within Pf6N2E2_1237at 1450.715 kb on + strand, within Pf6N2E2_1237at 1450.715 kb on + strand, within Pf6N2E2_1237at 1450.715 kb on + strand, within Pf6N2E2_1237at 1450.715 kb on + strand, within Pf6N2E2_1237at 1450.716 kb on - strand, within Pf6N2E2_1237at 1450.716 kb on - strand, within Pf6N2E2_1237at 1450.716 kb on - strand, within Pf6N2E2_1237at 1450.716 kb on - strand, within Pf6N2E2_1237at 1450.716 kb on - strand, within Pf6N2E2_1237at 1450.716 kb on - strand, within Pf6N2E2_1237at 1450.800 kb on + strand, within Pf6N2E2_1237at 1450.873 kb on - strand, within Pf6N2E2_1237at 1450.940 kb on + strand, within Pf6N2E2_1237at 1450.940 kb on + strand, within Pf6N2E2_1237at 1450.941 kb on - strand, within Pf6N2E2_1237at 1451.026 kb on - strand, within Pf6N2E2_1237at 1451.129 kb on - strand, within Pf6N2E2_1237at 1451.147 kb on + strand, within Pf6N2E2_1237at 1451.180 kb on + strand, within Pf6N2E2_1237at 1451.226 kb on + strand, within Pf6N2E2_1237at 1451.227 kb on - strand, within Pf6N2E2_1237at 1451.227 kb on - strand, within Pf6N2E2_1237at 1451.601 kb on + strandat 1451.608 kb on - strandat 1451.620 kb on + strandat 1451.620 kb on + strandat 1451.717 kb on + strandat 1451.717 kb on + strandat 1451.717 kb on + strandat 1451.717 kb on + strandat 1451.717 kb on + strandat 1451.718 kb on - strandat 1451.718 kb on - strandat 1451.740 kb on + strandat 1451.899 kb on + strand, within Pf6N2E2_1238at 1451.935 kb on + strand, within Pf6N2E2_1238at 1451.935 kb on + strand, within Pf6N2E2_1238at 1451.967 kb on + strandat 1451.967 kb on + strandat 1451.967 kb on + strandat 1451.967 kb on + strandat 1451.968 kb on - strandat 1451.968 kb on - strandat 1451.988 kb on + strandat 1451.989 kb on - strandat 1452.069 kb on - strandat 1452.084 kb on + strandat 1452.084 kb on + strandat 1452.084 kb on + strandat 1452.084 kb on + strandat 1452.084 kb on + strandat 1452.084 kb on + strandat 1452.084 kb on + strandat 1452.084 kb on + strandat 1452.084 kb on + strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.085 kb on - strandat 1452.086 kb on + strandat 1452.130 kb on + strandat 1452.130 kb on + strandat 1452.130 kb on + strandat 1452.131 kb on - strandat 1452.189 kb on - strandat 1452.296 kb on - strandat 1452.296 kb on - strandat 1452.303 kb on + strandat 1452.303 kb on + strandat 1452.304 kb on - strandat 1452.304 kb on - strandat 1452.307 kb on + strandat 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.335 kb on + strand, within Pf6N2E2_1239

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
remove
1,449,163 - Pf6N2E2_1236 0.18 +0.4
1,449,425 + Pf6N2E2_1236 0.47 -0.8
1,449,425 + Pf6N2E2_1236 0.47 +1.2
1,449,426 - Pf6N2E2_1236 0.47 +0.9
1,449,941 + +0.4
1,449,942 - +0.5
1,450,236 - Pf6N2E2_1237 0.14 -1.4
1,450,236 - Pf6N2E2_1237 0.14 +1.0
1,450,347 + Pf6N2E2_1237 0.21 -1.1
1,450,488 + Pf6N2E2_1237 0.31 -0.8
1,450,489 - Pf6N2E2_1237 0.31 -2.5
1,450,622 + Pf6N2E2_1237 0.40 +0.4
1,450,715 + Pf6N2E2_1237 0.47 -0.8
1,450,715 + Pf6N2E2_1237 0.47 +0.2
1,450,715 + Pf6N2E2_1237 0.47 -1.1
1,450,715 + Pf6N2E2_1237 0.47 -1.1
1,450,715 + Pf6N2E2_1237 0.47 -3.7
1,450,715 + Pf6N2E2_1237 0.47 +1.1
1,450,716 - Pf6N2E2_1237 0.47 -2.0
1,450,716 - Pf6N2E2_1237 0.47 -1.5
1,450,716 - Pf6N2E2_1237 0.47 +0.6
1,450,716 - Pf6N2E2_1237 0.47 +0.1
1,450,716 - Pf6N2E2_1237 0.47 -0.6
1,450,716 - Pf6N2E2_1237 0.47 -0.3
1,450,800 + Pf6N2E2_1237 0.52 -1.1
1,450,873 - Pf6N2E2_1237 0.57 +0.1
1,450,940 + Pf6N2E2_1237 0.62 -0.8
1,450,940 + Pf6N2E2_1237 0.62 -1.1
1,450,941 - Pf6N2E2_1237 0.62 -0.9
1,451,026 - Pf6N2E2_1237 0.68 -0.5
1,451,129 - Pf6N2E2_1237 0.75 -1.1
1,451,147 + Pf6N2E2_1237 0.76 +0.7
1,451,180 + Pf6N2E2_1237 0.78 +1.2
1,451,226 + Pf6N2E2_1237 0.81 +0.9
1,451,227 - Pf6N2E2_1237 0.81 +0.6
1,451,227 - Pf6N2E2_1237 0.81 -1.5
1,451,601 + -0.1
1,451,608 - -2.3
1,451,620 + -0.3
1,451,620 + -0.3
1,451,717 + -0.1
1,451,717 + +0.5
1,451,717 + +0.2
1,451,717 + -0.6
1,451,717 + +0.4
1,451,718 - +0.3
1,451,718 - +0.7
1,451,740 + -1.2
1,451,899 + Pf6N2E2_1238 0.62 -0.7
1,451,935 + Pf6N2E2_1238 0.81 +0.4
1,451,935 + Pf6N2E2_1238 0.81 +0.1
1,451,967 + +0.1
1,451,967 + -1.1
1,451,967 + +1.4
1,451,967 + +0.2
1,451,968 - +1.5
1,451,968 - -1.8
1,451,988 + -0.4
1,451,989 - +0.5
1,452,069 - -0.6
1,452,084 + -1.4
1,452,084 + +0.5
1,452,084 + +0.1
1,452,084 + +1.6
1,452,084 + +1.3
1,452,084 + -1.3
1,452,084 + +1.7
1,452,084 + +0.9
1,452,084 + -0.2
1,452,085 - -2.9
1,452,085 - -0.3
1,452,085 - -0.2
1,452,085 - +0.4
1,452,085 - +0.7
1,452,085 - -0.2
1,452,085 - -0.7
1,452,085 - -0.6
1,452,085 - -1.4
1,452,085 - -1.7
1,452,086 + +0.6
1,452,130 + -0.1
1,452,130 + +0.6
1,452,130 + +0.4
1,452,131 - +0.5
1,452,189 - -0.1
1,452,296 - -0.2
1,452,296 - -0.1
1,452,303 + -0.1
1,452,303 + +0.5
1,452,304 - +1.0
1,452,304 - -0.7
1,452,307 + +1.8
1,452,308 - Pf6N2E2_1239 0.10 -1.8
1,452,308 - Pf6N2E2_1239 0.10 -3.8
1,452,308 - Pf6N2E2_1239 0.10 +0.4
1,452,308 - Pf6N2E2_1239 0.10 +0.6
1,452,308 - Pf6N2E2_1239 0.10 -0.1
1,452,308 - Pf6N2E2_1239 0.10 +0.8
1,452,308 - Pf6N2E2_1239 0.10 +1.3
1,452,308 - Pf6N2E2_1239 0.10 +1.0
1,452,308 - Pf6N2E2_1239 0.10 -0.8
1,452,332 - Pf6N2E2_1239 0.14 +0.8
1,452,332 - Pf6N2E2_1239 0.14 +1.1
1,452,332 - Pf6N2E2_1239 0.14 +0.3
1,452,332 - Pf6N2E2_1239 0.14 -0.1
1,452,332 - Pf6N2E2_1239 0.14 -2.2
1,452,332 - Pf6N2E2_1239 0.14 -3.3
1,452,332 - Pf6N2E2_1239 0.14 +0.1
1,452,332 - Pf6N2E2_1239 0.14 -0.1
1,452,335 + Pf6N2E2_1239 0.14 -1.0

Or see this region's nucleotide sequence