Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1094 and Pf6N2E2_1095 overlap by 11 nucleotides Pf6N2E2_1095 and Pf6N2E2_1096 overlap by 8 nucleotides Pf6N2E2_1096 and Pf6N2E2_1097 overlap by 4 nucleotides Pf6N2E2_1097 and Pf6N2E2_1098 are separated by 144 nucleotides
Pf6N2E2_1094 - Opine oxidase subunit B, at 1,281,875 to 1,282,999
_1094
Pf6N2E2_1095 - Opine oxidase subunit C, at 1,282,989 to 1,283,318
_1095
Pf6N2E2_1096 - Sarcosine oxidase alpha subunit (EC 1.5.3.1), at 1,283,311 to 1,284,681
_1096
Pf6N2E2_1097 - Translation initiation inhibitor, at 1,284,678 to 1,285,028
_1097
Pf6N2E2_1098 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 1,285,173 to 1,285,955
_1098
Position (kb)
1283
1284
1285 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1282.367 kb on + strand, within Pf6N2E2_1094 at 1282.368 kb on - strand, within Pf6N2E2_1094 at 1282.608 kb on - strand, within Pf6N2E2_1094 at 1282.615 kb on + strand, within Pf6N2E2_1094 at 1282.615 kb on + strand, within Pf6N2E2_1094 at 1282.615 kb on + strand, within Pf6N2E2_1094 at 1282.616 kb on - strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.758 kb on + strand, within Pf6N2E2_1094 at 1282.759 kb on - strand, within Pf6N2E2_1094 at 1282.759 kb on - strand, within Pf6N2E2_1094 at 1282.817 kb on + strand, within Pf6N2E2_1094 at 1282.818 kb on - strand, within Pf6N2E2_1094 at 1282.818 kb on - strand, within Pf6N2E2_1094 at 1282.818 kb on - strand, within Pf6N2E2_1094 at 1282.818 kb on - strand, within Pf6N2E2_1094 at 1282.852 kb on + strand, within Pf6N2E2_1094 at 1283.163 kb on + strand, within Pf6N2E2_1095 at 1283.163 kb on + strand, within Pf6N2E2_1095 at 1283.316 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.442 kb on - strand at 1283.442 kb on - strand at 1283.442 kb on - strand at 1283.442 kb on - strand at 1283.443 kb on + strand at 1283.497 kb on + strand, within Pf6N2E2_1096 at 1283.498 kb on - strand, within Pf6N2E2_1096 at 1283.498 kb on - strand, within Pf6N2E2_1096 at 1283.498 kb on - strand, within Pf6N2E2_1096 at 1283.599 kb on + strand, within Pf6N2E2_1096 at 1283.599 kb on + strand, within Pf6N2E2_1096 at 1283.599 kb on + strand, within Pf6N2E2_1096 at 1283.600 kb on - strand, within Pf6N2E2_1096 at 1283.797 kb on + strand, within Pf6N2E2_1096 at 1283.798 kb on - strand, within Pf6N2E2_1096 at 1283.798 kb on - strand, within Pf6N2E2_1096 at 1283.815 kb on + strand, within Pf6N2E2_1096 at 1283.815 kb on + strand, within Pf6N2E2_1096 at 1284.165 kb on + strand, within Pf6N2E2_1096 at 1284.414 kb on - strand, within Pf6N2E2_1096 at 1284.414 kb on - strand, within Pf6N2E2_1096 at 1284.455 kb on - strand, within Pf6N2E2_1096 at 1284.598 kb on + strand at 1284.598 kb on + strand at 1284.684 kb on - strand at 1285.149 kb on + strand at 1285.182 kb on - strand at 1285.333 kb on - strand, within Pf6N2E2_1098 at 1285.614 kb on + strand, within Pf6N2E2_1098 at 1285.651 kb on + strand, within Pf6N2E2_1098 at 1285.651 kb on + strand, within Pf6N2E2_1098 at 1285.651 kb on + strand, within Pf6N2E2_1098 at 1285.660 kb on - strand, within Pf6N2E2_1098 at 1285.679 kb on - strand, within Pf6N2E2_1098 at 1285.679 kb on - strand, within Pf6N2E2_1098 at 1285.679 kb on - strand, within Pf6N2E2_1098
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM remove 1,282,367 + Pf6N2E2_1094 0.44 +1.2 1,282,368 - Pf6N2E2_1094 0.44 -1.8 1,282,608 - Pf6N2E2_1094 0.65 +0.8 1,282,615 + Pf6N2E2_1094 0.66 +0.2 1,282,615 + Pf6N2E2_1094 0.66 +0.2 1,282,615 + Pf6N2E2_1094 0.66 +0.3 1,282,616 - Pf6N2E2_1094 0.66 +0.6 1,282,619 + Pf6N2E2_1094 0.66 -0.5 1,282,619 + Pf6N2E2_1094 0.66 -0.1 1,282,619 + Pf6N2E2_1094 0.66 -0.4 1,282,619 + Pf6N2E2_1094 0.66 +0.7 1,282,619 + Pf6N2E2_1094 0.66 +0.1 1,282,620 - Pf6N2E2_1094 0.66 -1.6 1,282,620 - Pf6N2E2_1094 0.66 +1.0 1,282,620 - Pf6N2E2_1094 0.66 -1.3 1,282,620 - Pf6N2E2_1094 0.66 -0.2 1,282,620 - Pf6N2E2_1094 0.66 -2.3 1,282,620 - Pf6N2E2_1094 0.66 +0.7 1,282,620 - Pf6N2E2_1094 0.66 -4.3 1,282,620 - Pf6N2E2_1094 0.66 +0.6 1,282,620 - Pf6N2E2_1094 0.66 -0.1 1,282,758 + Pf6N2E2_1094 0.78 +0.2 1,282,759 - Pf6N2E2_1094 0.79 -0.4 1,282,759 - Pf6N2E2_1094 0.79 -0.1 1,282,817 + Pf6N2E2_1094 0.84 +0.6 1,282,818 - Pf6N2E2_1094 0.84 -1.0 1,282,818 - Pf6N2E2_1094 0.84 -0.6 1,282,818 - Pf6N2E2_1094 0.84 +0.5 1,282,818 - Pf6N2E2_1094 0.84 -0.9 1,282,852 + Pf6N2E2_1094 0.87 -0.1 1,283,163 + Pf6N2E2_1095 0.53 +1.4 1,283,163 + Pf6N2E2_1095 0.53 -0.1 1,283,316 + +1.7 1,283,441 + +0.4 1,283,441 + -0.1 1,283,441 + -0.4 1,283,441 + +2.5 1,283,441 + +0.4 1,283,441 + -1.0 1,283,441 + +0.6 1,283,442 - +2.0 1,283,442 - -0.3 1,283,442 - +0.8 1,283,442 - +1.4 1,283,443 + +2.6 1,283,497 + Pf6N2E2_1096 0.14 -0.2 1,283,498 - Pf6N2E2_1096 0.14 -0.6 1,283,498 - Pf6N2E2_1096 0.14 +0.3 1,283,498 - Pf6N2E2_1096 0.14 -1.2 1,283,599 + Pf6N2E2_1096 0.21 -2.1 1,283,599 + Pf6N2E2_1096 0.21 -1.8 1,283,599 + Pf6N2E2_1096 0.21 +0.2 1,283,600 - Pf6N2E2_1096 0.21 +1.1 1,283,797 + Pf6N2E2_1096 0.35 -3.7 1,283,798 - Pf6N2E2_1096 0.36 -0.6 1,283,798 - Pf6N2E2_1096 0.36 -3.4 1,283,815 + Pf6N2E2_1096 0.37 -3.9 1,283,815 + Pf6N2E2_1096 0.37 -0.8 1,284,165 + Pf6N2E2_1096 0.62 -0.1 1,284,414 - Pf6N2E2_1096 0.80 +1.4 1,284,414 - Pf6N2E2_1096 0.80 -0.9 1,284,455 - Pf6N2E2_1096 0.83 +0.9 1,284,598 + +0.2 1,284,598 + +1.0 1,284,684 - +1.3 1,285,149 + -0.2 1,285,182 - -0.7 1,285,333 - Pf6N2E2_1098 0.20 -0.9 1,285,614 + Pf6N2E2_1098 0.56 +1.3 1,285,651 + Pf6N2E2_1098 0.61 +1.6 1,285,651 + Pf6N2E2_1098 0.61 +0.6 1,285,651 + Pf6N2E2_1098 0.61 +0.3 1,285,660 - Pf6N2E2_1098 0.62 -1.3 1,285,679 - Pf6N2E2_1098 0.65 -0.6 1,285,679 - Pf6N2E2_1098 0.65 +0.2 1,285,679 - Pf6N2E2_1098 0.65 +0.9
Or see this region's nucleotide sequence