Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1082 and Pf6N2E2_1083 are separated by 230 nucleotides Pf6N2E2_1083 and Pf6N2E2_1084 are separated by 150 nucleotides Pf6N2E2_1084 and Pf6N2E2_1085 are separated by 9 nucleotides Pf6N2E2_1085 and Pf6N2E2_1086 are separated by 295 nucleotides
Pf6N2E2_1082 - CopG protein, at 1,265,966 to 1,266,412
_1082
Pf6N2E2_1083 - hypothetical protein, at 1,266,643 to 1,266,780
_1083
Pf6N2E2_1084 - hypothetical protein, at 1,266,931 to 1,267,119
_1084
Pf6N2E2_1085 - Fe2+/Zn2+ uptake regulation proteins, at 1,267,129 to 1,267,509
_1085
Pf6N2E2_1086 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 1,267,805 to 1,270,153
_1086
Position (kb)
1267
1268 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1266.495 kb on - strand at 1266.587 kb on - strand at 1266.602 kb on + strand at 1266.602 kb on + strand at 1266.602 kb on + strand at 1266.644 kb on + strand at 1266.760 kb on + strand, within Pf6N2E2_1083 at 1266.760 kb on + strand, within Pf6N2E2_1083 at 1266.761 kb on - strand, within Pf6N2E2_1083 at 1266.780 kb on + strand at 1266.780 kb on + strand at 1266.780 kb on + strand at 1266.780 kb on + strand at 1266.780 kb on + strand at 1266.780 kb on + strand at 1266.781 kb on - strand at 1266.781 kb on - strand at 1266.781 kb on - strand at 1266.781 kb on - strand at 1266.781 kb on - strand at 1266.784 kb on + strand at 1266.784 kb on + strand at 1266.784 kb on + strand at 1266.784 kb on + strand at 1266.784 kb on + strand at 1266.785 kb on - strand at 1266.785 kb on - strand at 1266.785 kb on - strand at 1266.785 kb on - strand at 1266.785 kb on - strand at 1266.785 kb on - strand at 1266.785 kb on - strand at 1266.785 kb on - strand at 1266.785 kb on - strand at 1266.819 kb on + strand at 1266.820 kb on - strand at 1266.835 kb on + strand at 1266.874 kb on - strand at 1266.912 kb on + strand at 1266.913 kb on - strand at 1266.929 kb on + strand at 1267.048 kb on + strand, within Pf6N2E2_1084 at 1267.048 kb on + strand, within Pf6N2E2_1084 at 1267.435 kb on + strand, within Pf6N2E2_1085 at 1267.435 kb on + strand, within Pf6N2E2_1085 at 1267.436 kb on - strand, within Pf6N2E2_1085 at 1267.560 kb on + strand at 1267.561 kb on - strand at 1267.563 kb on + strand at 1267.564 kb on - strand at 1267.564 kb on - strand at 1267.658 kb on - strand at 1267.994 kb on + strand at 1268.214 kb on - strand, within Pf6N2E2_1086
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM remove 1,266,495 - +0.7 1,266,587 - -0.2 1,266,602 + -0.7 1,266,602 + -2.3 1,266,602 + -0.3 1,266,644 + -0.3 1,266,760 + Pf6N2E2_1083 0.85 -3.4 1,266,760 + Pf6N2E2_1083 0.85 +2.3 1,266,761 - Pf6N2E2_1083 0.86 -0.6 1,266,780 + +0.3 1,266,780 + -1.1 1,266,780 + +0.8 1,266,780 + -1.6 1,266,780 + +0.7 1,266,780 + +0.3 1,266,781 - +1.3 1,266,781 - -0.1 1,266,781 - -1.4 1,266,781 - -2.3 1,266,781 - -0.9 1,266,784 + +1.0 1,266,784 + -0.3 1,266,784 + -0.1 1,266,784 + -2.0 1,266,784 + +0.1 1,266,785 - -3.3 1,266,785 - +1.1 1,266,785 - -0.3 1,266,785 - -1.0 1,266,785 - -1.7 1,266,785 - -0.2 1,266,785 - +0.4 1,266,785 - +0.6 1,266,785 - +0.5 1,266,819 + -0.1 1,266,820 - +0.8 1,266,835 + +0.3 1,266,874 - -1.3 1,266,912 + +0.2 1,266,913 - +0.8 1,266,929 + -2.3 1,267,048 + Pf6N2E2_1084 0.62 +2.6 1,267,048 + Pf6N2E2_1084 0.62 +1.2 1,267,435 + Pf6N2E2_1085 0.80 -1.3 1,267,435 + Pf6N2E2_1085 0.80 -1.0 1,267,436 - Pf6N2E2_1085 0.81 +0.1 1,267,560 + -2.8 1,267,561 - +1.4 1,267,563 + -0.8 1,267,564 - +1.4 1,267,564 - -0.2 1,267,658 - -0.0 1,267,994 + -0.2 1,268,214 - Pf6N2E2_1086 0.17 +0.6
Or see this region's nucleotide sequence