Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_799

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_797 and Pf1N1B4_798 are separated by 1 nucleotidesPf1N1B4_798 and Pf1N1B4_799 are separated by 47 nucleotidesPf1N1B4_799 and Pf1N1B4_800 are separated by 12 nucleotides Pf1N1B4_797 - Phage protein, at 910,147 to 911,655 _797 Pf1N1B4_798 - Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-), at 911,657 to 912,598 _798 Pf1N1B4_799 - hypothetical protein, at 912,646 to 912,807 _799 Pf1N1B4_800 - OpgC protein, at 912,820 to 913,944 _800 Position (kb) 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 911.658 kb on + strandat 911.658 kb on + strandat 911.658 kb on + strandat 911.699 kb on + strandat 911.699 kb on + strandat 911.700 kb on - strandat 911.700 kb on - strandat 911.704 kb on - strandat 911.704 kb on - strandat 911.704 kb on - strandat 911.730 kb on + strandat 911.730 kb on + strandat 911.730 kb on + strandat 911.730 kb on + strandat 911.730 kb on + strandat 911.730 kb on + strandat 911.731 kb on - strandat 911.731 kb on - strandat 911.731 kb on - strandat 911.731 kb on - strandat 911.731 kb on - strandat 911.746 kb on - strandat 911.746 kb on - strandat 911.746 kb on - strandat 911.862 kb on + strand, within Pf1N1B4_798at 911.862 kb on + strand, within Pf1N1B4_798at 911.862 kb on + strand, within Pf1N1B4_798at 911.862 kb on + strandat 911.862 kb on + strand, within Pf1N1B4_798at 911.863 kb on - strand, within Pf1N1B4_798at 911.863 kb on - strand, within Pf1N1B4_798at 911.863 kb on - strand, within Pf1N1B4_798at 911.907 kb on + strand, within Pf1N1B4_798at 911.907 kb on + strand, within Pf1N1B4_798at 911.908 kb on - strand, within Pf1N1B4_798at 911.944 kb on + strand, within Pf1N1B4_798at 911.945 kb on - strand, within Pf1N1B4_798at 912.021 kb on + strand, within Pf1N1B4_798at 912.022 kb on - strand, within Pf1N1B4_798at 912.186 kb on + strand, within Pf1N1B4_798at 912.186 kb on + strand, within Pf1N1B4_798at 912.186 kb on + strand, within Pf1N1B4_798at 912.187 kb on - strand, within Pf1N1B4_798at 912.187 kb on - strand, within Pf1N1B4_798at 912.187 kb on - strand, within Pf1N1B4_798at 912.216 kb on + strand, within Pf1N1B4_798at 912.217 kb on - strand, within Pf1N1B4_798at 912.417 kb on - strand, within Pf1N1B4_798at 912.625 kb on + strandat 912.625 kb on + strandat 912.625 kb on + strandat 912.625 kb on + strandat 912.625 kb on + strandat 912.625 kb on + strandat 912.625 kb on + strandat 912.625 kb on + strandat 912.626 kb on - strandat 912.626 kb on - strandat 912.626 kb on - strandat 912.626 kb on - strandat 912.626 kb on - strandat 912.626 kb on - strandat 912.626 kb on - strandat 912.711 kb on + strandat 912.714 kb on - strand, within Pf1N1B4_799at 912.736 kb on + strand, within Pf1N1B4_799at 912.736 kb on + strand, within Pf1N1B4_799at 912.792 kb on + strandat 912.928 kb on - strandat 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.067 kb on - strand, within Pf1N1B4_800at 913.067 kb on - strand, within Pf1N1B4_800at 913.067 kb on - strand, within Pf1N1B4_800at 913.067 kb on - strand, within Pf1N1B4_800at 913.077 kb on + strand, within Pf1N1B4_800at 913.078 kb on - strand, within Pf1N1B4_800at 913.078 kb on - strand, within Pf1N1B4_800at 913.168 kb on + strand, within Pf1N1B4_800at 913.168 kb on + strand, within Pf1N1B4_800at 913.254 kb on + strand, within Pf1N1B4_800at 913.254 kb on + strand, within Pf1N1B4_800at 913.255 kb on - strand, within Pf1N1B4_800at 913.312 kb on + strand, within Pf1N1B4_800at 913.312 kb on + strand, within Pf1N1B4_800at 913.312 kb on + strand, within Pf1N1B4_800at 913.312 kb on + strand, within Pf1N1B4_800at 913.313 kb on - strand, within Pf1N1B4_800at 913.339 kb on + strand, within Pf1N1B4_800at 913.339 kb on + strand, within Pf1N1B4_800at 913.339 kb on + strand, within Pf1N1B4_800at 913.339 kb on + strand, within Pf1N1B4_800at 913.339 kb on + strandat 913.429 kb on - strand, within Pf1N1B4_800at 913.429 kb on - strand, within Pf1N1B4_800at 913.525 kb on + strand, within Pf1N1B4_800at 913.526 kb on - strand, within Pf1N1B4_800at 913.675 kb on + strand, within Pf1N1B4_800at 913.676 kb on - strand, within Pf1N1B4_800at 913.676 kb on - strand, within Pf1N1B4_800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
911,658 + -0.1
911,658 + +0.1
911,658 + +0.6
911,699 + -0.7
911,699 + -3.3
911,700 - -2.9
911,700 - +1.4
911,704 - -1.5
911,704 - +1.0
911,704 - -1.5
911,730 + -0.8
911,730 + +1.0
911,730 + +0.3
911,730 + -0.8
911,730 + +0.0
911,730 + -2.0
911,731 - -0.7
911,731 - +1.0
911,731 - -0.2
911,731 - +1.3
911,731 - -0.3
911,746 - +0.5
911,746 - -1.0
911,746 - -0.4
911,862 + Pf1N1B4_798 0.22 -1.0
911,862 + Pf1N1B4_798 0.22 +2.6
911,862 + Pf1N1B4_798 0.22 +0.6
911,862 + +2.8
911,862 + Pf1N1B4_798 0.22 -0.6
911,863 - Pf1N1B4_798 0.22 +0.0
911,863 - Pf1N1B4_798 0.22 -1.2
911,863 - Pf1N1B4_798 0.22 -1.5
911,907 + Pf1N1B4_798 0.27 +1.0
911,907 + Pf1N1B4_798 0.27 +1.3
911,908 - Pf1N1B4_798 0.27 -1.1
911,944 + Pf1N1B4_798 0.30 +1.6
911,945 - Pf1N1B4_798 0.31 +0.0
912,021 + Pf1N1B4_798 0.39 +2.0
912,022 - Pf1N1B4_798 0.39 +1.5
912,186 + Pf1N1B4_798 0.56 -0.1
912,186 + Pf1N1B4_798 0.56 -0.3
912,186 + Pf1N1B4_798 0.56 -0.7
912,187 - Pf1N1B4_798 0.56 -0.3
912,187 - Pf1N1B4_798 0.56 -1.5
912,187 - Pf1N1B4_798 0.56 +0.6
912,216 + Pf1N1B4_798 0.59 -1.4
912,217 - Pf1N1B4_798 0.59 +2.4
912,417 - Pf1N1B4_798 0.81 +1.0
912,625 + -0.3
912,625 + +0.8
912,625 + +1.4
912,625 + +0.0
912,625 + +0.0
912,625 + -0.3
912,625 + +0.5
912,625 + +2.0
912,626 - -1.0
912,626 - -0.4
912,626 - +0.0
912,626 - +0.0
912,626 - +0.0
912,626 - +0.0
912,626 - -0.6
912,711 + +0.0
912,714 - Pf1N1B4_799 0.42 +1.9
912,736 + Pf1N1B4_799 0.56 -1.3
912,736 + Pf1N1B4_799 0.56 -2.0
912,792 + -0.5
912,928 - -0.5
913,066 + Pf1N1B4_800 0.22 +2.4
913,066 + Pf1N1B4_800 0.22 -0.2
913,066 + Pf1N1B4_800 0.22 -1.5
913,066 + Pf1N1B4_800 0.22 -2.0
913,066 + Pf1N1B4_800 0.22 -0.2
913,066 + Pf1N1B4_800 0.22 -1.0
913,066 + Pf1N1B4_800 0.22 -0.4
913,066 + Pf1N1B4_800 0.22 -1.5
913,067 - Pf1N1B4_800 0.22 -0.2
913,067 - Pf1N1B4_800 0.22 +0.8
913,067 - Pf1N1B4_800 0.22 -1.0
913,067 - Pf1N1B4_800 0.22 -0.3
913,077 + Pf1N1B4_800 0.23 -0.3
913,078 - Pf1N1B4_800 0.23 +0.0
913,078 - Pf1N1B4_800 0.23 +0.0
913,168 + Pf1N1B4_800 0.31 -2.0
913,168 + Pf1N1B4_800 0.31 +3.0
913,254 + Pf1N1B4_800 0.39 +0.9
913,254 + Pf1N1B4_800 0.39 +1.6
913,255 - Pf1N1B4_800 0.39 -1.0
913,312 + Pf1N1B4_800 0.44 -2.3
913,312 + Pf1N1B4_800 0.44 +0.8
913,312 + Pf1N1B4_800 0.44 -2.3
913,312 + Pf1N1B4_800 0.44 +0.0
913,313 - Pf1N1B4_800 0.44 +0.5
913,339 + Pf1N1B4_800 0.46 -0.6
913,339 + Pf1N1B4_800 0.46 +1.6
913,339 + Pf1N1B4_800 0.46 +1.4
913,339 + Pf1N1B4_800 0.46 +0.6
913,339 + +0.0
913,429 - Pf1N1B4_800 0.54 +0.5
913,429 - Pf1N1B4_800 0.54 -1.5
913,525 + Pf1N1B4_800 0.63 +0.0
913,526 - Pf1N1B4_800 0.63 +0.8
913,675 + Pf1N1B4_800 0.76 +0.8
913,676 - Pf1N1B4_800 0.76 +0.0
913,676 - Pf1N1B4_800 0.76 -0.4

Or see this region's nucleotide sequence