Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_606

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_603 and Pf1N1B4_604 are separated by 77 nucleotidesPf1N1B4_604 and Pf1N1B4_605 are separated by 28 nucleotidesPf1N1B4_605 and Pf1N1B4_606 overlap by 69 nucleotidesPf1N1B4_606 and Pf1N1B4_607 are separated by 122 nucleotides Pf1N1B4_603 - Methylglyoxal synthase (EC 4.2.3.3), at 697,008 to 697,472 _603 Pf1N1B4_604 - FIG006045: Sigma factor, ECF subfamily, at 697,550 to 698,068 _604 Pf1N1B4_605 - hypothetical protein, at 698,097 to 698,288 _605 Pf1N1B4_606 - Iron siderophore sensor protein, at 698,220 to 699,128 _606 Pf1N1B4_607 - TonB-dependent hemin , ferrichrome receptor, at 699,251 to 701,812 _607 Position (kb) 698 699 700Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 697.389 kb on + strand, within Pf1N1B4_603at 697.389 kb on + strand, within Pf1N1B4_603at 697.389 kb on + strand, within Pf1N1B4_603at 697.390 kb on - strand, within Pf1N1B4_603at 697.390 kb on - strand, within Pf1N1B4_603at 697.400 kb on + strand, within Pf1N1B4_603at 697.400 kb on + strand, within Pf1N1B4_603at 697.401 kb on - strand, within Pf1N1B4_603at 697.401 kb on - strand, within Pf1N1B4_603at 697.444 kb on - strandat 697.452 kb on + strandat 697.452 kb on + strandat 697.452 kb on + strandat 697.452 kb on + strandat 697.453 kb on - strandat 697.453 kb on - strandat 697.453 kb on - strandat 697.471 kb on - strandat 697.664 kb on + strand, within Pf1N1B4_604at 697.665 kb on - strand, within Pf1N1B4_604at 697.665 kb on - strand, within Pf1N1B4_604at 697.958 kb on + strand, within Pf1N1B4_604at 697.958 kb on + strand, within Pf1N1B4_604at 697.958 kb on + strand, within Pf1N1B4_604at 697.958 kb on + strand, within Pf1N1B4_604at 697.959 kb on - strand, within Pf1N1B4_604at 697.959 kb on - strand, within Pf1N1B4_604at 697.959 kb on - strand, within Pf1N1B4_604at 697.959 kb on - strand, within Pf1N1B4_604at 698.098 kb on + strandat 698.098 kb on + strandat 698.635 kb on - strand, within Pf1N1B4_606at 698.840 kb on + strand, within Pf1N1B4_606at 698.840 kb on + strand, within Pf1N1B4_606at 698.974 kb on - strand, within Pf1N1B4_606at 699.030 kb on - strand, within Pf1N1B4_606at 699.219 kb on + strandat 699.219 kb on + strandat 699.219 kb on + strandat 699.220 kb on - strandat 699.220 kb on - strandat 699.220 kb on - strandat 699.222 kb on - strandat 699.222 kb on - strandat 699.294 kb on + strandat 699.294 kb on + strandat 699.294 kb on + strandat 699.294 kb on + strandat 699.295 kb on - strandat 699.295 kb on - strandat 699.295 kb on - strandat 699.386 kb on + strandat 699.386 kb on + strandat 699.584 kb on - strand, within Pf1N1B4_607at 699.737 kb on - strandat 699.813 kb on - strand, within Pf1N1B4_607at 699.897 kb on - strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strandat 699.918 kb on - strandat 699.918 kb on - strandat 699.918 kb on - strand, within Pf1N1B4_607at 699.918 kb on - strand, within Pf1N1B4_607at 699.918 kb on - strand, within Pf1N1B4_607at 699.918 kb on - strand, within Pf1N1B4_607at 699.975 kb on + strand, within Pf1N1B4_607at 699.976 kb on - strand, within Pf1N1B4_607at 699.978 kb on - strand, within Pf1N1B4_607at 700.011 kb on - strand, within Pf1N1B4_607at 700.011 kb on - strand, within Pf1N1B4_607at 700.011 kb on - strand, within Pf1N1B4_607at 700.013 kb on + strand, within Pf1N1B4_607at 700.013 kb on + strand, within Pf1N1B4_607at 700.013 kb on + strand, within Pf1N1B4_607at 700.013 kb on + strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.079 kb on + strand, within Pf1N1B4_607

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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697,389 + Pf1N1B4_603 0.82 -1.0
697,389 + Pf1N1B4_603 0.82 -2.0
697,389 + Pf1N1B4_603 0.82 -0.6
697,390 - Pf1N1B4_603 0.82 +0.1
697,390 - Pf1N1B4_603 0.82 -1.6
697,400 + Pf1N1B4_603 0.84 -1.6
697,400 + Pf1N1B4_603 0.84 +1.1
697,401 - Pf1N1B4_603 0.85 -0.5
697,401 - Pf1N1B4_603 0.85 +1.9
697,444 - +0.7
697,452 + -0.0
697,452 + +0.3
697,452 + -0.6
697,452 + -0.6
697,453 - -0.0
697,453 - +0.1
697,453 - -0.0
697,471 - -0.7
697,664 + Pf1N1B4_604 0.22 -0.0
697,665 - Pf1N1B4_604 0.22 +1.2
697,665 - Pf1N1B4_604 0.22 +0.2
697,958 + Pf1N1B4_604 0.79 +1.6
697,958 + Pf1N1B4_604 0.79 -1.0
697,958 + Pf1N1B4_604 0.79 -0.0
697,958 + Pf1N1B4_604 0.79 +2.0
697,959 - Pf1N1B4_604 0.79 -0.3
697,959 - Pf1N1B4_604 0.79 +0.2
697,959 - Pf1N1B4_604 0.79 +0.7
697,959 - Pf1N1B4_604 0.79 -0.0
698,098 + +0.4
698,098 + -0.2
698,635 - Pf1N1B4_606 0.46 -2.8
698,840 + Pf1N1B4_606 0.68 -1.0
698,840 + Pf1N1B4_606 0.68 +0.5
698,974 - Pf1N1B4_606 0.83 -1.8
699,030 - Pf1N1B4_606 0.89 -0.0
699,219 + +1.3
699,219 + +0.6
699,219 + -0.0
699,220 - +0.9
699,220 - -1.2
699,220 - -1.0
699,222 - -0.0
699,222 - -0.0
699,294 + +1.4
699,294 + -1.0
699,294 + +0.5
699,294 + +0.1
699,295 - +1.4
699,295 - +0.4
699,295 - -0.9
699,386 + +0.6
699,386 + +2.8
699,584 - Pf1N1B4_607 0.13 +0.4
699,737 - +1.6
699,813 - Pf1N1B4_607 0.22 -0.0
699,897 - Pf1N1B4_607 0.25 -0.0
699,917 + Pf1N1B4_607 0.26 +0.7
699,917 + Pf1N1B4_607 0.26 +0.2
699,917 + Pf1N1B4_607 0.26 -0.3
699,917 + Pf1N1B4_607 0.26 -1.6
699,917 + Pf1N1B4_607 0.26 -0.0
699,917 + Pf1N1B4_607 0.26 -0.8
699,917 + Pf1N1B4_607 0.26 -0.3
699,917 + Pf1N1B4_607 0.26 -0.4
699,917 + +3.0
699,918 - +1.0
699,918 - -0.0
699,918 - Pf1N1B4_607 0.26 +0.6
699,918 - Pf1N1B4_607 0.26 +1.2
699,918 - Pf1N1B4_607 0.26 -0.6
699,918 - Pf1N1B4_607 0.26 +2.6
699,975 + Pf1N1B4_607 0.28 -0.0
699,976 - Pf1N1B4_607 0.28 -2.8
699,978 - Pf1N1B4_607 0.28 -0.3
700,011 - Pf1N1B4_607 0.30 +0.3
700,011 - Pf1N1B4_607 0.30 -1.8
700,011 - Pf1N1B4_607 0.30 -1.0
700,013 + Pf1N1B4_607 0.30 +3.2
700,013 + Pf1N1B4_607 0.30 -0.3
700,013 + Pf1N1B4_607 0.30 -0.5
700,013 + Pf1N1B4_607 0.30 +0.8
700,014 - Pf1N1B4_607 0.30 -0.4
700,014 - Pf1N1B4_607 0.30 +0.1
700,014 - Pf1N1B4_607 0.30 +1.2
700,014 - Pf1N1B4_607 0.30 +0.6
700,014 - Pf1N1B4_607 0.30 -1.6
700,079 + Pf1N1B4_607 0.32 +0.3

Or see this region's nucleotide sequence