Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6034 and Pf1N1B4_6035 are separated by 56 nucleotides Pf1N1B4_6035 and Pf1N1B4_6036 are separated by 179 nucleotides Pf1N1B4_6036 and Pf1N1B4_6037 are separated by 336 nucleotides
Pf1N1B4_6034 - D-ribose ABC transporter, ATPase component RbsA <small>(from data)</small>, at 497,933 to 499,486
_6034
Pf1N1B4_6035 - D-ribose ABC transporter, substrate-binding component RbsB <small>(from data)</small>, at 499,543 to 500,499
_6035
Pf1N1B4_6036 - FIG00953132: hypothetical protein, at 500,679 to 501,131
_6036
Pf1N1B4_6037 - L-asparaginase (EC 3.5.1.1), at 501,468 to 502,556
_6037
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 498.566 kb on - strand, within Pf1N1B4_6034 at 498.590 kb on + strand, within Pf1N1B4_6034 at 498.590 kb on + strand, within Pf1N1B4_6034 at 498.792 kb on + strand, within Pf1N1B4_6034 at 498.792 kb on + strand, within Pf1N1B4_6034 at 498.793 kb on - strand, within Pf1N1B4_6034 at 498.888 kb on + strand at 498.888 kb on + strand, within Pf1N1B4_6034 at 498.888 kb on + strand at 498.889 kb on - strand, within Pf1N1B4_6034 at 498.889 kb on - strand, within Pf1N1B4_6034 at 498.889 kb on - strand, within Pf1N1B4_6034 at 498.889 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.342 kb on + strand at 499.342 kb on + strand at 499.342 kb on + strand at 499.431 kb on + strand at 499.431 kb on + strand at 499.431 kb on + strand at 499.431 kb on + strand at 499.486 kb on + strand at 499.544 kb on + strand at 499.544 kb on + strand at 499.544 kb on + strand at 499.545 kb on - strand at 499.545 kb on - strand at 499.545 kb on - strand at 499.777 kb on + strand, within Pf1N1B4_6035 at 499.795 kb on - strand, within Pf1N1B4_6035 at 500.027 kb on + strand, within Pf1N1B4_6035 at 500.027 kb on + strand, within Pf1N1B4_6035 at 500.028 kb on - strand, within Pf1N1B4_6035 at 500.068 kb on + strand, within Pf1N1B4_6035 at 500.069 kb on - strand, within Pf1N1B4_6035 at 500.324 kb on + strand, within Pf1N1B4_6035 at 500.325 kb on - strand at 500.516 kb on + strand at 500.608 kb on + strand at 500.608 kb on + strand at 500.608 kb on + strand at 500.609 kb on - strand at 500.609 kb on - strand at 500.609 kb on - strand at 500.675 kb on + strand at 500.676 kb on - strand at 500.676 kb on - strand at 500.676 kb on - strand at 500.910 kb on + strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand at 501.002 kb on + strand, within Pf1N1B4_6036 at 501.003 kb on - strand, within Pf1N1B4_6036 at 501.065 kb on + strand at 501.122 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.157 kb on - strand at 501.248 kb on - strand at 501.255 kb on - strand at 501.344 kb on + strand at 501.385 kb on + strand at 501.385 kb on + strand at 501.386 kb on - strand at 501.422 kb on + strand at 501.422 kb on + strand at 501.452 kb on - strand at 501.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 498,566 - Pf1N1B4_6034 0.41 -0.2 498,590 + Pf1N1B4_6034 0.42 -0.4 498,590 + Pf1N1B4_6034 0.42 +0.4 498,792 + Pf1N1B4_6034 0.55 -1.4 498,792 + Pf1N1B4_6034 0.55 +1.9 498,793 - Pf1N1B4_6034 0.55 +0.6 498,888 + -0.4 498,888 + Pf1N1B4_6034 0.61 +0.2 498,888 + -1.0 498,889 - Pf1N1B4_6034 0.62 +1.6 498,889 - Pf1N1B4_6034 0.62 +0.6 498,889 - Pf1N1B4_6034 0.62 +2.2 498,889 - Pf1N1B4_6034 0.62 +1.9 499,067 - Pf1N1B4_6034 0.73 +1.5 499,067 - Pf1N1B4_6034 0.73 +0.2 499,067 - Pf1N1B4_6034 0.73 -1.2 499,067 - Pf1N1B4_6034 0.73 +1.2 499,067 - Pf1N1B4_6034 0.73 -1.4 499,342 + -0.2 499,342 + +0.4 499,342 + -0.9 499,431 + -0.0 499,431 + +1.2 499,431 + -0.3 499,431 + -0.8 499,486 + -0.4 499,544 + -2.4 499,544 + +1.2 499,544 + -0.8 499,545 - -1.4 499,545 - +0.6 499,545 - -0.2 499,777 + Pf1N1B4_6035 0.24 -1.6 499,795 - Pf1N1B4_6035 0.26 +0.3 500,027 + Pf1N1B4_6035 0.51 -1.3 500,027 + Pf1N1B4_6035 0.51 -1.4 500,028 - Pf1N1B4_6035 0.51 -1.0 500,068 + Pf1N1B4_6035 0.55 -1.6 500,069 - Pf1N1B4_6035 0.55 -2.2 500,324 + Pf1N1B4_6035 0.82 -0.4 500,325 - -1.4 500,516 + -1.4 500,608 + -0.4 500,608 + -0.1 500,608 + +2.2 500,609 - -0.9 500,609 - -1.4 500,609 - +1.6 500,675 + +0.2 500,676 - -1.1 500,676 - -1.0 500,676 - +1.4 500,910 + Pf1N1B4_6036 0.51 -0.8 500,925 - Pf1N1B4_6036 0.54 +0.8 500,925 - Pf1N1B4_6036 0.54 +0.9 500,925 - Pf1N1B4_6036 0.54 -0.9 500,925 - -0.4 501,002 + Pf1N1B4_6036 0.71 -0.0 501,003 - Pf1N1B4_6036 0.72 +0.2 501,065 + -0.4 501,122 + -2.0 501,131 + -3.7 501,131 + +0.6 501,131 + -0.8 501,131 + -2.7 501,131 + +0.2 501,131 + -0.1 501,131 + +0.6 501,131 + +0.2 501,131 + +0.4 501,131 + -0.1 501,131 + -0.6 501,132 - +0.9 501,132 - -1.0 501,132 - +0.8 501,132 - -0.9 501,132 - -2.0 501,132 - -0.4 501,157 - +0.9 501,248 - -0.0 501,255 - +1.2 501,344 + +1.3 501,385 + -0.4 501,385 + +0.6 501,386 - -0.4 501,422 + -0.2 501,422 + +1.2 501,452 - +0.6 501,467 - +1.5
Or see this region's nucleotide sequence