Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5995 and Pf1N1B4_5996 are separated by 91 nucleotides Pf1N1B4_5996 and Pf1N1B4_5997 are separated by 87 nucleotides Pf1N1B4_5997 and Pf1N1B4_5998 are separated by 14 nucleotides
Pf1N1B4_5995 - Transporter, MFS superfamily, at 445,703 to 447,034
_5995
Pf1N1B4_5996 - Transposase, at 447,126 to 448,178
_5996
Pf1N1B4_5997 - Taurine dioxygenase (EC 1.14.11.17), at 448,266 to 449,114
_5997
Pf1N1B4_5998 - Quinone oxidoreductase (EC 1.6.5.5), at 449,129 to 450,109
_5998
Position (kb)
447
448
449 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 446.247 kb on + strand, within Pf1N1B4_5995 at 446.263 kb on - strand, within Pf1N1B4_5995 at 446.323 kb on - strand, within Pf1N1B4_5995 at 446.357 kb on - strand, within Pf1N1B4_5995 at 446.544 kb on - strand, within Pf1N1B4_5995 at 446.698 kb on - strand, within Pf1N1B4_5995 at 446.922 kb on + strand at 446.922 kb on + strand at 446.923 kb on - strand at 446.971 kb on - strand at 447.058 kb on + strand at 447.058 kb on + strand at 447.059 kb on - strand at 447.059 kb on - strand at 447.059 kb on - strand at 447.230 kb on - strand at 447.230 kb on - strand at 447.344 kb on + strand, within Pf1N1B4_5996 at 447.345 kb on - strand, within Pf1N1B4_5996 at 447.345 kb on - strand, within Pf1N1B4_5996 at 447.375 kb on - strand, within Pf1N1B4_5996 at 447.544 kb on + strand, within Pf1N1B4_5996 at 447.544 kb on + strand, within Pf1N1B4_5996 at 447.544 kb on + strand, within Pf1N1B4_5996 at 447.545 kb on - strand, within Pf1N1B4_5996 at 447.545 kb on - strand, within Pf1N1B4_5996 at 448.027 kb on + strand, within Pf1N1B4_5996 at 448.111 kb on + strand at 448.184 kb on - strand at 448.189 kb on + strand at 448.189 kb on + strand at 448.189 kb on + strand at 448.189 kb on + strand at 448.190 kb on - strand at 448.195 kb on + strand at 448.195 kb on + strand at 448.270 kb on + strand at 448.350 kb on - strand at 448.406 kb on - strand, within Pf1N1B4_5997 at 448.417 kb on + strand, within Pf1N1B4_5997 at 448.418 kb on - strand, within Pf1N1B4_5997 at 448.418 kb on - strand, within Pf1N1B4_5997 at 448.501 kb on + strand, within Pf1N1B4_5997 at 448.501 kb on + strand, within Pf1N1B4_5997 at 448.502 kb on - strand at 448.594 kb on + strand, within Pf1N1B4_5997 at 448.868 kb on - strand, within Pf1N1B4_5997 at 449.130 kb on + strand at 449.131 kb on - strand at 449.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 446,247 + Pf1N1B4_5995 0.41 -3.4 446,263 - Pf1N1B4_5995 0.42 +0.2 446,323 - Pf1N1B4_5995 0.47 +0.6 446,357 - Pf1N1B4_5995 0.49 +0.4 446,544 - Pf1N1B4_5995 0.63 -1.2 446,698 - Pf1N1B4_5995 0.75 -3.6 446,922 + -0.1 446,922 + +0.2 446,923 - -0.0 446,971 - -0.4 447,058 + -1.7 447,058 + +0.6 447,059 - -1.8 447,059 - +2.2 447,059 - -0.2 447,230 - +2.9 447,230 - +0.6 447,344 + Pf1N1B4_5996 0.21 +1.2 447,345 - Pf1N1B4_5996 0.21 -0.4 447,345 - Pf1N1B4_5996 0.21 -0.0 447,375 - Pf1N1B4_5996 0.24 -0.4 447,544 + Pf1N1B4_5996 0.40 -0.4 447,544 + Pf1N1B4_5996 0.40 -0.4 447,544 + Pf1N1B4_5996 0.40 +0.6 447,545 - Pf1N1B4_5996 0.40 -0.4 447,545 - Pf1N1B4_5996 0.40 -2.0 448,027 + Pf1N1B4_5996 0.86 -0.1 448,111 + -1.4 448,184 - -1.7 448,189 + -0.7 448,189 + -1.0 448,189 + -0.3 448,189 + +0.2 448,190 - +0.3 448,195 + -2.0 448,195 + -0.7 448,270 + +0.6 448,350 - +0.2 448,406 - Pf1N1B4_5997 0.16 -0.9 448,417 + Pf1N1B4_5997 0.18 -0.8 448,418 - Pf1N1B4_5997 0.18 +1.5 448,418 - Pf1N1B4_5997 0.18 -1.7 448,501 + Pf1N1B4_5997 0.28 -1.0 448,501 + Pf1N1B4_5997 0.28 -1.3 448,502 - -0.4 448,594 + Pf1N1B4_5997 0.39 +0.2 448,868 - Pf1N1B4_5997 0.71 +1.7 449,130 + -1.0 449,131 - -1.1 449,131 - -0.4
Or see this region's nucleotide sequence