Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5835 and Pf1N1B4_5836 are separated by 133 nucleotides Pf1N1B4_5836 and Pf1N1B4_5837 are separated by 110 nucleotides Pf1N1B4_5837 and Pf1N1B4_5838 are separated by 186 nucleotides
Pf1N1B4_5835 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 269,257 to 270,438
_5835
Pf1N1B4_5836 - Putative polyketide synthase (Fragment), at 270,572 to 271,174
_5836
Pf1N1B4_5837 - Transcriptional regulator, LysR family, at 271,285 to 272,181
_5837
Pf1N1B4_5838 - FIG00956589: hypothetical protein, at 272,368 to 273,165
_5838
Position (kb) 271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 270.436 kb on + strand at 270.553 kb on + strand at 270.554 kb on - strand at 271.049 kb on + strand, within Pf1N1B4_5836 at 271.049 kb on + strand, within Pf1N1B4_5836 at 271.050 kb on - strand, within Pf1N1B4_5836 at 271.182 kb on - strand at 271.209 kb on - strand at 271.267 kb on + strand at 271.267 kb on + strand at 271.270 kb on + strand at 271.271 kb on - strand at 271.428 kb on - strand, within Pf1N1B4_5837 at 271.604 kb on + strand, within Pf1N1B4_5837 at 271.604 kb on + strand, within Pf1N1B4_5837 at 271.604 kb on + strand at 271.604 kb on + strand, within Pf1N1B4_5837 at 271.604 kb on + strand, within Pf1N1B4_5837 at 271.604 kb on + strand, within Pf1N1B4_5837 at 271.605 kb on - strand, within Pf1N1B4_5837 at 271.605 kb on - strand, within Pf1N1B4_5837 at 271.605 kb on - strand, within Pf1N1B4_5837 at 271.605 kb on - strand, within Pf1N1B4_5837 at 271.699 kb on + strand, within Pf1N1B4_5837 at 271.699 kb on + strand, within Pf1N1B4_5837 at 271.795 kb on + strand, within Pf1N1B4_5837 at 271.796 kb on - strand, within Pf1N1B4_5837 at 272.101 kb on + strand at 272.101 kb on + strand at 272.101 kb on + strand at 272.101 kb on + strand at 272.213 kb on + strand at 272.213 kb on + strand at 272.214 kb on - strand at 272.217 kb on + strand at 272.217 kb on + strand at 272.217 kb on + strand at 272.218 kb on - strand at 272.218 kb on - strand at 272.227 kb on + strand at 272.233 kb on - strand at 272.279 kb on + strand at 272.279 kb on + strand at 272.279 kb on + strand at 272.279 kb on + strand at 272.279 kb on + strand at 272.280 kb on - strand at 272.280 kb on - strand at 272.280 kb on - strand at 272.280 kb on - strand at 272.280 kb on - strand at 272.390 kb on + strand at 272.390 kb on + strand at 272.726 kb on + strand, within Pf1N1B4_5838 at 272.727 kb on - strand, within Pf1N1B4_5838 at 272.903 kb on + strand, within Pf1N1B4_5838 at 272.989 kb on + strand, within Pf1N1B4_5838 at 272.990 kb on - strand, within Pf1N1B4_5838
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 270,436 + +1.2 270,553 + -0.3 270,554 - -0.6 271,049 + Pf1N1B4_5836 0.79 +1.4 271,049 + Pf1N1B4_5836 0.79 -1.2 271,050 - Pf1N1B4_5836 0.79 -1.4 271,182 - -0.4 271,209 - +0.9 271,267 + -0.0 271,267 + -0.7 271,270 + -2.7 271,271 - -0.3 271,428 - Pf1N1B4_5837 0.16 -1.7 271,604 + Pf1N1B4_5837 0.36 -0.4 271,604 + Pf1N1B4_5837 0.36 -0.7 271,604 + -1.4 271,604 + Pf1N1B4_5837 0.36 -1.1 271,604 + Pf1N1B4_5837 0.36 -2.2 271,604 + Pf1N1B4_5837 0.36 -0.4 271,605 - Pf1N1B4_5837 0.36 -3.0 271,605 - Pf1N1B4_5837 0.36 -2.7 271,605 - Pf1N1B4_5837 0.36 -0.4 271,605 - Pf1N1B4_5837 0.36 +0.2 271,699 + Pf1N1B4_5837 0.46 -0.3 271,699 + Pf1N1B4_5837 0.46 +0.5 271,795 + Pf1N1B4_5837 0.57 -0.8 271,796 - Pf1N1B4_5837 0.57 -2.4 272,101 + -0.4 272,101 + +0.1 272,101 + +0.4 272,101 + +1.2 272,213 + +1.4 272,213 + +1.9 272,214 - +0.8 272,217 + -2.0 272,217 + -0.4 272,217 + +0.6 272,218 - +0.1 272,218 - -0.1 272,227 + -0.9 272,233 - -0.4 272,279 + +1.2 272,279 + -0.4 272,279 + -0.6 272,279 + -0.2 272,279 + +0.2 272,280 - +0.3 272,280 - +1.0 272,280 - -1.4 272,280 - +0.6 272,280 - -0.0 272,390 + +0.1 272,390 + -1.0 272,726 + Pf1N1B4_5838 0.45 +0.2 272,727 - Pf1N1B4_5838 0.45 -0.4 272,903 + Pf1N1B4_5838 0.67 +0.9 272,989 + Pf1N1B4_5838 0.78 +0.6 272,990 - Pf1N1B4_5838 0.78 +0.2
Or see this region's nucleotide sequence