Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5762

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5759 and Pf1N1B4_5760 are separated by 3 nucleotidesPf1N1B4_5760 and Pf1N1B4_5761 are separated by 79 nucleotidesPf1N1B4_5761 and Pf1N1B4_5762 are separated by 11 nucleotidesPf1N1B4_5762 and Pf1N1B4_5763 are separated by 43 nucleotides Pf1N1B4_5759 - Nitric-oxide reductase subunit B (EC 1.7.99.7), at 199,183 to 200,610 _5759 Pf1N1B4_5760 - Nitric-oxide reductase subunit C (EC 1.7.99.7), at 200,614 to 201,222 _5760 Pf1N1B4_5761 - Nitric oxide reductase activation protein NorF, at 201,302 to 201,559 _5761 Pf1N1B4_5762 - Nitric oxide reductase activation protein NorE, at 201,571 to 202,098 _5762 Pf1N1B4_5763 - Nitric oxide reductase activation protein NorQ, at 202,142 to 202,933 _5763 Position (kb) 201 202 203Strain fitness (log2 ratio) -3 -2 -1 0 1at 200.615 kb on + strandat 200.616 kb on - strandat 200.640 kb on + strandat 200.641 kb on - strandat 200.641 kb on - strandat 200.770 kb on + strand, within Pf1N1B4_5760at 200.770 kb on + strand, within Pf1N1B4_5760at 200.770 kb on + strand, within Pf1N1B4_5760at 201.015 kb on - strandat 201.015 kb on - strand, within Pf1N1B4_5760at 201.015 kb on - strand, within Pf1N1B4_5760at 201.015 kb on - strand, within Pf1N1B4_5760at 201.018 kb on + strand, within Pf1N1B4_5760at 201.087 kb on + strand, within Pf1N1B4_5760at 201.330 kb on - strand, within Pf1N1B4_5761at 201.633 kb on - strand, within Pf1N1B4_5762at 201.730 kb on + strand, within Pf1N1B4_5762at 201.730 kb on + strand, within Pf1N1B4_5762at 201.731 kb on - strand, within Pf1N1B4_5762at 201.846 kb on - strand, within Pf1N1B4_5762at 201.878 kb on + strand, within Pf1N1B4_5762at 201.878 kb on + strand, within Pf1N1B4_5762at 201.879 kb on - strand, within Pf1N1B4_5762at 202.270 kb on + strand, within Pf1N1B4_5763at 202.501 kb on - strand, within Pf1N1B4_5763at 202.764 kb on + strand, within Pf1N1B4_5763at 202.902 kb on + strandat 202.902 kb on + strandat 202.903 kb on - strandat 202.903 kb on - strandat 203.053 kb on - strandat 203.053 kb on - strandat 203.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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200,615 + +0.2
200,616 - -3.0
200,640 + +0.1
200,641 - -1.0
200,641 - -0.3
200,770 + Pf1N1B4_5760 0.26 -2.0
200,770 + Pf1N1B4_5760 0.26 +0.5
200,770 + Pf1N1B4_5760 0.26 -0.5
201,015 - +0.1
201,015 - Pf1N1B4_5760 0.66 +0.8
201,015 - Pf1N1B4_5760 0.66 +0.5
201,015 - Pf1N1B4_5760 0.66 +0.8
201,018 + Pf1N1B4_5760 0.66 -0.2
201,087 + Pf1N1B4_5760 0.78 -1.2
201,330 - Pf1N1B4_5761 0.11 -1.0
201,633 - Pf1N1B4_5762 0.12 -0.5
201,730 + Pf1N1B4_5762 0.30 -1.5
201,730 + Pf1N1B4_5762 0.30 -0.5
201,731 - Pf1N1B4_5762 0.30 +0.3
201,846 - Pf1N1B4_5762 0.52 -2.0
201,878 + Pf1N1B4_5762 0.58 -0.5
201,878 + Pf1N1B4_5762 0.58 -2.3
201,879 - Pf1N1B4_5762 0.58 +0.5
202,270 + Pf1N1B4_5763 0.16 +0.2
202,501 - Pf1N1B4_5763 0.45 +0.0
202,764 + Pf1N1B4_5763 0.79 -0.5
202,902 + -0.7
202,902 + -0.4
202,903 - +0.3
202,903 - -1.0
203,053 - -2.3
203,053 - +0.5
203,069 - -2.0

Or see this region's nucleotide sequence