Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5716 and Pf1N1B4_5717 are separated by 159 nucleotides Pf1N1B4_5717 and Pf1N1B4_5718 are separated by 100 nucleotides Pf1N1B4_5718 and Pf1N1B4_5719 are separated by 354 nucleotides
Pf1N1B4_5716 - Acriflavin resistance protein, at 157,751 to 160,846
_5716
Pf1N1B4_5717 - hypothetical protein, at 161,006 to 161,122
_5717
Pf1N1B4_5718 - Transcriptional regulator, Cro/CI family, at 161,223 to 162,014
_5718
Pf1N1B4_5719 - hypothetical protein, at 162,369 to 163,043
_5719
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.369 kb on + strand at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.763 kb on + strand at 160.763 kb on + strand at 160.763 kb on + strand at 160.764 kb on - strand at 160.882 kb on + strand at 160.882 kb on + strand at 160.883 kb on - strand at 160.885 kb on + strand at 160.885 kb on + strand at 160.885 kb on + strand at 160.885 kb on + strand at 160.885 kb on + strand at 160.886 kb on - strand at 160.886 kb on - strand at 160.886 kb on - strand at 160.886 kb on - strand at 160.886 kb on - strand at 161.172 kb on - strand at 161.283 kb on - strand at 161.283 kb on - strand at 161.287 kb on - strand at 161.530 kb on + strand, within Pf1N1B4_5718 at 161.530 kb on + strand at 161.589 kb on + strand, within Pf1N1B4_5718 at 161.589 kb on + strand, within Pf1N1B4_5718 at 161.696 kb on + strand, within Pf1N1B4_5718 at 161.832 kb on + strand, within Pf1N1B4_5718 at 161.832 kb on + strand, within Pf1N1B4_5718 at 161.833 kb on - strand at 161.937 kb on + strand at 161.937 kb on + strand at 161.937 kb on + strand at 161.938 kb on - strand at 162.053 kb on + strand at 162.131 kb on - strand at 162.141 kb on + strand at 162.141 kb on + strand at 162.141 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.298 kb on + strand at 162.298 kb on + strand at 162.304 kb on + strand at 162.305 kb on - strand at 162.305 kb on - strand at 162.355 kb on + strand at 162.390 kb on + strand at 162.390 kb on + strand at 162.390 kb on + strand at 162.391 kb on - strand at 162.413 kb on + strand at 162.413 kb on + strand at 162.759 kb on + strand, within Pf1N1B4_5719 at 162.760 kb on - strand, within Pf1N1B4_5719 at 162.876 kb on - strand, within Pf1N1B4_5719 at 162.957 kb on + strand, within Pf1N1B4_5719 at 162.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 160,369 + Pf1N1B4_5716 0.85 +1.3 160,369 + Pf1N1B4_5716 0.85 -0.9 160,369 + Pf1N1B4_5716 0.85 +0.1 160,369 + -1.5 160,369 + Pf1N1B4_5716 0.85 +0.3 160,369 + Pf1N1B4_5716 0.85 +0.8 160,370 - Pf1N1B4_5716 0.85 +0.3 160,370 - Pf1N1B4_5716 0.85 +0.5 160,370 - Pf1N1B4_5716 0.85 +0.1 160,370 - Pf1N1B4_5716 0.85 +0.9 160,370 - Pf1N1B4_5716 0.85 +1.1 160,763 + +1.5 160,763 + +0.8 160,763 + +0.5 160,764 - -0.5 160,882 + +0.3 160,882 + -1.5 160,883 - +1.5 160,885 + -2.0 160,885 + -1.5 160,885 + -0.9 160,885 + -0.1 160,885 + -0.5 160,886 - +0.0 160,886 - -1.5 160,886 - +0.4 160,886 - -1.8 160,886 - +0.5 161,172 - -0.5 161,283 - +0.1 161,283 - -0.0 161,287 - -0.1 161,530 + Pf1N1B4_5718 0.39 -1.7 161,530 + +0.1 161,589 + Pf1N1B4_5718 0.46 -1.0 161,589 + Pf1N1B4_5718 0.46 -0.5 161,696 + Pf1N1B4_5718 0.60 -0.5 161,832 + Pf1N1B4_5718 0.77 +1.3 161,832 + Pf1N1B4_5718 0.77 -1.6 161,833 - +1.1 161,937 + -0.5 161,937 + -0.5 161,937 + -0.1 161,938 - -2.8 162,053 + +0.3 162,131 - -1.5 162,141 + -0.7 162,141 + -0.5 162,141 + +0.9 162,190 + -0.0 162,190 + +3.0 162,190 + +0.4 162,298 + -0.5 162,298 + -2.5 162,304 + +0.5 162,305 - -2.2 162,305 - +1.4 162,355 + -0.9 162,390 + -2.3 162,390 + -1.0 162,390 + -2.5 162,391 - +2.1 162,413 + -0.0 162,413 + -0.8 162,759 + Pf1N1B4_5719 0.58 +0.2 162,760 - Pf1N1B4_5719 0.58 -0.1 162,876 - Pf1N1B4_5719 0.75 +0.1 162,957 + Pf1N1B4_5719 0.87 +1.7 162,958 - +1.5
Or see this region's nucleotide sequence