Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5708 and Pf1N1B4_5709 are separated by 355 nucleotides Pf1N1B4_5709 and Pf1N1B4_5710 are separated by 22 nucleotides Pf1N1B4_5710 and Pf1N1B4_5711 are separated by 92 nucleotides
Pf1N1B4_5708 - Transcriptional regulator, TetR family, at 146,847 to 147,461
_5708
Pf1N1B4_5709 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 147,817 to 149,052
_5709
Pf1N1B4_5710 - Transcriptional regulator, TetR family, at 149,075 to 149,629
_5710
Pf1N1B4_5711 - Salicylate hydroxylase (EC 1.14.13.1), at 149,722 to 151,380
_5711
Position (kb)
147
148
149
150 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 147.330 kb on - strand, within Pf1N1B4_5708 at 147.332 kb on - strand, within Pf1N1B4_5708 at 147.332 kb on - strand, within Pf1N1B4_5708 at 147.480 kb on - strand at 147.567 kb on + strand at 147.567 kb on + strand at 147.567 kb on + strand at 147.590 kb on + strand at 147.591 kb on - strand at 147.591 kb on - strand at 147.591 kb on - strand at 147.623 kb on + strand at 147.747 kb on - strand at 148.148 kb on + strand, within Pf1N1B4_5709 at 148.148 kb on + strand, within Pf1N1B4_5709 at 148.149 kb on - strand, within Pf1N1B4_5709 at 148.278 kb on + strand, within Pf1N1B4_5709 at 148.604 kb on - strand, within Pf1N1B4_5709 at 148.664 kb on - strand, within Pf1N1B4_5709 at 149.026 kb on + strand at 149.121 kb on - strand at 149.175 kb on - strand, within Pf1N1B4_5710 at 149.219 kb on + strand, within Pf1N1B4_5710 at 149.219 kb on + strand, within Pf1N1B4_5710 at 149.526 kb on + strand, within Pf1N1B4_5710 at 149.527 kb on - strand, within Pf1N1B4_5710 at 149.732 kb on - strand at 149.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 147,330 - Pf1N1B4_5708 0.79 +0.9 147,332 - Pf1N1B4_5708 0.79 -0.3 147,332 - Pf1N1B4_5708 0.79 -0.0 147,480 - +1.0 147,567 + +1.5 147,567 + -0.5 147,567 + -0.5 147,590 + -0.5 147,591 - +1.3 147,591 - +0.7 147,591 - +0.9 147,623 + -2.3 147,747 - +0.5 148,148 + Pf1N1B4_5709 0.27 +2.1 148,148 + Pf1N1B4_5709 0.27 -1.6 148,149 - Pf1N1B4_5709 0.27 -1.3 148,278 + Pf1N1B4_5709 0.37 -0.9 148,604 - Pf1N1B4_5709 0.64 -2.8 148,664 - Pf1N1B4_5709 0.69 +0.3 149,026 + -1.0 149,121 - -0.7 149,175 - Pf1N1B4_5710 0.18 +0.2 149,219 + Pf1N1B4_5710 0.26 -1.2 149,219 + Pf1N1B4_5710 0.26 -0.5 149,526 + Pf1N1B4_5710 0.81 +0.2 149,527 - Pf1N1B4_5710 0.81 +0.5 149,732 - -0.8 149,856 + -1.5
Or see this region's nucleotide sequence