Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5709

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5708 and Pf1N1B4_5709 are separated by 355 nucleotidesPf1N1B4_5709 and Pf1N1B4_5710 are separated by 22 nucleotidesPf1N1B4_5710 and Pf1N1B4_5711 are separated by 92 nucleotides Pf1N1B4_5708 - Transcriptional regulator, TetR family, at 146,847 to 147,461 _5708 Pf1N1B4_5709 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 147,817 to 149,052 _5709 Pf1N1B4_5710 - Transcriptional regulator, TetR family, at 149,075 to 149,629 _5710 Pf1N1B4_5711 - Salicylate hydroxylase (EC 1.14.13.1), at 149,722 to 151,380 _5711 Position (kb) 147 148 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 147.330 kb on - strand, within Pf1N1B4_5708at 147.332 kb on - strand, within Pf1N1B4_5708at 147.332 kb on - strand, within Pf1N1B4_5708at 147.480 kb on - strandat 147.567 kb on + strandat 147.567 kb on + strandat 147.567 kb on + strandat 147.590 kb on + strandat 147.591 kb on - strandat 147.591 kb on - strandat 147.591 kb on - strandat 147.623 kb on + strandat 147.747 kb on - strandat 148.148 kb on + strand, within Pf1N1B4_5709at 148.148 kb on + strand, within Pf1N1B4_5709at 148.149 kb on - strand, within Pf1N1B4_5709at 148.278 kb on + strand, within Pf1N1B4_5709at 148.604 kb on - strand, within Pf1N1B4_5709at 148.664 kb on - strand, within Pf1N1B4_5709at 149.026 kb on + strandat 149.121 kb on - strandat 149.175 kb on - strand, within Pf1N1B4_5710at 149.219 kb on + strand, within Pf1N1B4_5710at 149.219 kb on + strand, within Pf1N1B4_5710at 149.526 kb on + strand, within Pf1N1B4_5710at 149.527 kb on - strand, within Pf1N1B4_5710at 149.732 kb on - strandat 149.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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147,330 - Pf1N1B4_5708 0.79 +0.9
147,332 - Pf1N1B4_5708 0.79 -0.3
147,332 - Pf1N1B4_5708 0.79 -0.0
147,480 - +1.0
147,567 + +1.5
147,567 + -0.5
147,567 + -0.5
147,590 + -0.5
147,591 - +1.3
147,591 - +0.7
147,591 - +0.9
147,623 + -2.3
147,747 - +0.5
148,148 + Pf1N1B4_5709 0.27 +2.1
148,148 + Pf1N1B4_5709 0.27 -1.6
148,149 - Pf1N1B4_5709 0.27 -1.3
148,278 + Pf1N1B4_5709 0.37 -0.9
148,604 - Pf1N1B4_5709 0.64 -2.8
148,664 - Pf1N1B4_5709 0.69 +0.3
149,026 + -1.0
149,121 - -0.7
149,175 - Pf1N1B4_5710 0.18 +0.2
149,219 + Pf1N1B4_5710 0.26 -1.2
149,219 + Pf1N1B4_5710 0.26 -0.5
149,526 + Pf1N1B4_5710 0.81 +0.2
149,527 - Pf1N1B4_5710 0.81 +0.5
149,732 - -0.8
149,856 + -1.5

Or see this region's nucleotide sequence