Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_521 and Pf1N1B4_522 are separated by 189 nucleotides Pf1N1B4_522 and Pf1N1B4_523 are separated by 114 nucleotides Pf1N1B4_523 and Pf1N1B4_524 are separated by 4 nucleotides
Pf1N1B4_521 - ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing, at 618,939 to 621,098
_521
Pf1N1B4_522 - HlyD family secretion protein, at 621,288 to 622,652
_522
Pf1N1B4_523 - FIG00955751: hypothetical protein, at 622,767 to 623,360
_523
Pf1N1B4_524 - Transcriptional regulator GbuR, at 623,365 to 624,258
_524
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2 at 620.413 kb on - strand, within Pf1N1B4_521 at 620.413 kb on - strand, within Pf1N1B4_521 at 620.413 kb on - strand, within Pf1N1B4_521 at 620.539 kb on - strand, within Pf1N1B4_521 at 620.539 kb on - strand, within Pf1N1B4_521 at 620.623 kb on - strand, within Pf1N1B4_521 at 620.689 kb on - strand, within Pf1N1B4_521 at 620.689 kb on - strand, within Pf1N1B4_521 at 620.843 kb on - strand, within Pf1N1B4_521 at 621.183 kb on + strand at 621.203 kb on + strand at 621.203 kb on + strand at 621.324 kb on + strand at 621.324 kb on + strand at 621.669 kb on + strand, within Pf1N1B4_522 at 621.669 kb on + strand, within Pf1N1B4_522 at 621.786 kb on + strand, within Pf1N1B4_522 at 622.392 kb on + strand, within Pf1N1B4_522 at 622.398 kb on + strand at 622.407 kb on + strand, within Pf1N1B4_522 at 622.408 kb on - strand, within Pf1N1B4_522 at 622.480 kb on - strand, within Pf1N1B4_522 at 622.480 kb on - strand at 622.571 kb on + strand at 622.571 kb on + strand at 622.571 kb on + strand at 622.599 kb on + strand at 622.599 kb on + strand at 622.608 kb on - strand at 623.062 kb on - strand, within Pf1N1B4_523 at 623.083 kb on + strand, within Pf1N1B4_523 at 623.083 kb on + strand, within Pf1N1B4_523 at 623.084 kb on - strand, within Pf1N1B4_523 at 623.366 kb on + strand at 623.366 kb on + strand at 623.367 kb on - strand at 623.367 kb on - strand at 623.494 kb on + strand, within Pf1N1B4_524 at 623.494 kb on + strand, within Pf1N1B4_524 at 623.494 kb on + strand, within Pf1N1B4_524 at 623.525 kb on + strand, within Pf1N1B4_524 at 623.541 kb on - strand, within Pf1N1B4_524 at 623.549 kb on + strand, within Pf1N1B4_524 at 623.549 kb on + strand, within Pf1N1B4_524 at 623.550 kb on - strand, within Pf1N1B4_524 at 623.550 kb on - strand, within Pf1N1B4_524 at 623.550 kb on - strand, within Pf1N1B4_524 at 623.550 kb on - strand, within Pf1N1B4_524 at 623.586 kb on + strand, within Pf1N1B4_524 at 623.586 kb on + strand, within Pf1N1B4_524 at 623.586 kb on + strand, within Pf1N1B4_524 at 623.586 kb on + strand, within Pf1N1B4_524 at 623.587 kb on - strand, within Pf1N1B4_524
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 620,413 - Pf1N1B4_521 0.68 -1.0 620,413 - Pf1N1B4_521 0.68 -1.4 620,413 - Pf1N1B4_521 0.68 -0.5 620,539 - Pf1N1B4_521 0.74 -1.0 620,539 - Pf1N1B4_521 0.74 +1.1 620,623 - Pf1N1B4_521 0.78 -2.3 620,689 - Pf1N1B4_521 0.81 -0.0 620,689 - Pf1N1B4_521 0.81 -0.6 620,843 - Pf1N1B4_521 0.88 +0.8 621,183 + +0.6 621,203 + +1.2 621,203 + +0.4 621,324 + +0.9 621,324 + -0.0 621,669 + Pf1N1B4_522 0.28 -0.0 621,669 + Pf1N1B4_522 0.28 +2.0 621,786 + Pf1N1B4_522 0.36 -0.6 622,392 + Pf1N1B4_522 0.81 -1.3 622,398 + -0.0 622,407 + Pf1N1B4_522 0.82 -0.6 622,408 - Pf1N1B4_522 0.82 +1.2 622,480 - Pf1N1B4_522 0.87 -1.7 622,480 - +1.6 622,571 + -1.6 622,571 + +1.3 622,571 + -0.0 622,599 + +0.4 622,599 + -0.0 622,608 - -1.4 623,062 - Pf1N1B4_523 0.50 -0.0 623,083 + Pf1N1B4_523 0.53 -1.6 623,083 + Pf1N1B4_523 0.53 -1.0 623,084 - Pf1N1B4_523 0.53 +0.8 623,366 + -1.2 623,366 + -0.2 623,367 - +1.6 623,367 - +1.0 623,494 + Pf1N1B4_524 0.14 -0.5 623,494 + Pf1N1B4_524 0.14 +1.0 623,494 + Pf1N1B4_524 0.14 -2.6 623,525 + Pf1N1B4_524 0.18 -0.0 623,541 - Pf1N1B4_524 0.20 -0.8 623,549 + Pf1N1B4_524 0.21 +2.3 623,549 + Pf1N1B4_524 0.21 +0.3 623,550 - Pf1N1B4_524 0.21 -0.0 623,550 - Pf1N1B4_524 0.21 -0.3 623,550 - Pf1N1B4_524 0.21 -0.8 623,550 - Pf1N1B4_524 0.21 -2.2 623,586 + Pf1N1B4_524 0.25 -0.2 623,586 + Pf1N1B4_524 0.25 +2.0 623,586 + Pf1N1B4_524 0.25 -0.0 623,586 + Pf1N1B4_524 0.25 -1.0 623,587 - Pf1N1B4_524 0.25 +0.4
Or see this region's nucleotide sequence