Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4911 and Pf1N1B4_4912 are separated by 45 nucleotides Pf1N1B4_4912 and Pf1N1B4_4913 are separated by 448 nucleotides Pf1N1B4_4913 and Pf1N1B4_4914 are separated by 39 nucleotides
Pf1N1B4_4911 - FIG00953249: hypothetical protein, at 5,441,448 to 5,442,104
_4911
Pf1N1B4_4912 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,442,150 to 5,442,638
_4912
Pf1N1B4_4913 - hypothetical protein, at 5,443,087 to 5,443,866
_4913
Pf1N1B4_4914 - Membrane protein, putative, at 5,443,906 to 5,445,111
_4914
Position (kb)
5443
5444 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5442.125 kb on - strand at 5442.125 kb on - strand at 5442.161 kb on - strand at 5442.164 kb on - strand at 5442.303 kb on + strand, within Pf1N1B4_4912 at 5442.306 kb on - strand, within Pf1N1B4_4912 at 5442.316 kb on - strand at 5442.362 kb on - strand, within Pf1N1B4_4912 at 5442.443 kb on - strand, within Pf1N1B4_4912 at 5442.565 kb on - strand, within Pf1N1B4_4912 at 5442.963 kb on + strand at 5443.008 kb on + strand at 5443.009 kb on - strand at 5443.009 kb on - strand at 5443.009 kb on - strand at 5443.205 kb on - strand, within Pf1N1B4_4913 at 5443.419 kb on + strand, within Pf1N1B4_4913 at 5443.552 kb on + strand, within Pf1N1B4_4913 at 5443.673 kb on - strand, within Pf1N1B4_4913 at 5443.673 kb on - strand, within Pf1N1B4_4913 at 5443.673 kb on - strand, within Pf1N1B4_4913 at 5443.673 kb on - strand, within Pf1N1B4_4913 at 5443.673 kb on - strand, within Pf1N1B4_4913 at 5443.673 kb on - strand at 5443.673 kb on - strand, within Pf1N1B4_4913 at 5443.905 kb on + strand at 5443.914 kb on - strand at 5443.963 kb on - strand at 5444.119 kb on + strand, within Pf1N1B4_4914 at 5444.120 kb on - strand, within Pf1N1B4_4914 at 5444.120 kb on - strand, within Pf1N1B4_4914 at 5444.120 kb on - strand, within Pf1N1B4_4914 at 5444.191 kb on + strand, within Pf1N1B4_4914 at 5444.191 kb on + strand, within Pf1N1B4_4914 at 5444.770 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 5,442,125 - +0.1 5,442,125 - -0.5 5,442,161 - -2.1 5,442,164 - -0.2 5,442,303 + Pf1N1B4_4912 0.31 +0.4 5,442,306 - Pf1N1B4_4912 0.32 +0.7 5,442,316 - -0.5 5,442,362 - Pf1N1B4_4912 0.43 -0.1 5,442,443 - Pf1N1B4_4912 0.60 +0.8 5,442,565 - Pf1N1B4_4912 0.85 +0.8 5,442,963 + -0.2 5,443,008 + -0.5 5,443,009 - -1.1 5,443,009 - -1.5 5,443,009 - -0.5 5,443,205 - Pf1N1B4_4913 0.15 -1.4 5,443,419 + Pf1N1B4_4913 0.43 -0.3 5,443,552 + Pf1N1B4_4913 0.60 -2.1 5,443,673 - Pf1N1B4_4913 0.75 +1.5 5,443,673 - Pf1N1B4_4913 0.75 -3.5 5,443,673 - Pf1N1B4_4913 0.75 -1.0 5,443,673 - Pf1N1B4_4913 0.75 -0.0 5,443,673 - Pf1N1B4_4913 0.75 -2.8 5,443,673 - +0.5 5,443,673 - Pf1N1B4_4913 0.75 +0.3 5,443,905 + -0.1 5,443,914 - -0.2 5,443,963 - -1.8 5,444,119 + Pf1N1B4_4914 0.18 +0.6 5,444,120 - Pf1N1B4_4914 0.18 -1.1 5,444,120 - Pf1N1B4_4914 0.18 +0.2 5,444,120 - Pf1N1B4_4914 0.18 -2.1 5,444,191 + Pf1N1B4_4914 0.24 +0.7 5,444,191 + Pf1N1B4_4914 0.24 +2.2 5,444,770 + +1.1
Or see this region's nucleotide sequence