Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4627

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4626 and Pf1N1B4_4627 are separated by 115 nucleotidesPf1N1B4_4627 and Pf1N1B4_4628 are separated by 209 nucleotidesPf1N1B4_4628 and Pf1N1B4_4629 are separated by 115 nucleotidesPf1N1B4_4629 and Pf1N1B4_4630 overlap by 4 nucleotides Pf1N1B4_4626 - 3-carboxymuconate cyclase, at 5,102,679 to 5,103,896 _4626 Pf1N1B4_4627 - FIG00957600: hypothetical protein, at 5,104,012 to 5,104,191 _4627 Pf1N1B4_4628 - hypothetical protein, at 5,104,401 to 5,104,526 _4628 Pf1N1B4_4629 - hypothetical protein, at 5,104,642 to 5,104,854 _4629 Pf1N1B4_4630 - hypothetical protein, at 5,104,851 to 5,105,108 _4630 Position (kb) 5104 5105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5103.094 kb on - strand, within Pf1N1B4_4626at 5103.094 kb on - strandat 5103.094 kb on - strandat 5103.157 kb on + strandat 5103.158 kb on - strand, within Pf1N1B4_4626at 5103.262 kb on - strand, within Pf1N1B4_4626at 5103.262 kb on - strandat 5103.570 kb on - strand, within Pf1N1B4_4626at 5103.809 kb on + strandat 5103.894 kb on + strandat 5104.124 kb on - strand, within Pf1N1B4_4627at 5104.136 kb on - strand, within Pf1N1B4_4627at 5104.196 kb on + strandat 5104.197 kb on - strandat 5104.311 kb on - strandat 5104.389 kb on - strandat 5104.437 kb on + strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,103,094 - Pf1N1B4_4626 0.34 -0.0
5,103,094 - +1.1
5,103,094 - -0.5
5,103,157 + -2.0
5,103,158 - Pf1N1B4_4626 0.39 -0.0
5,103,262 - Pf1N1B4_4626 0.48 +1.9
5,103,262 - -3.0
5,103,570 - Pf1N1B4_4626 0.73 -1.5
5,103,809 + +1.1
5,103,894 + -1.1
5,104,124 - Pf1N1B4_4627 0.62 -0.8
5,104,136 - Pf1N1B4_4627 0.69 -0.2
5,104,196 + -0.1
5,104,197 - +0.2
5,104,311 - +1.9
5,104,389 - +0.3
5,104,437 + -1.0
5,105,170 - -0.9
5,105,170 - +1.9
5,105,170 - +0.5
5,105,170 - -1.0
5,105,170 - +1.0
5,105,170 - +1.5
5,105,173 + -1.5

Or see this region's nucleotide sequence