Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4427 and Pf1N1B4_4428 overlap by 14 nucleotides Pf1N1B4_4428 and Pf1N1B4_4429 are separated by 17 nucleotides Pf1N1B4_4429 and Pf1N1B4_4430 overlap by 4 nucleotides
Pf1N1B4_4427 - Glutamate transport membrane-spanning protein, at 4,887,696 to 4,888,484
_4427
Pf1N1B4_4428 - ABC-type polar amino acid transport system, ATPase component, at 4,888,471 to 4,889,307
_4428
Pf1N1B4_4429 - No significant database matches, at 4,889,325 to 4,889,921
_4429
Pf1N1B4_4430 - Cystathionine beta-lyase (EC 4.4.1.8), at 4,889,918 to 4,892,677
_4430
Position (kb)
4889
4890 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4888.391 kb on + strand, within Pf1N1B4_4427 at 4888.395 kb on + strand, within Pf1N1B4_4427 at 4888.395 kb on + strand, within Pf1N1B4_4427 at 4888.763 kb on - strand, within Pf1N1B4_4428 at 4889.305 kb on + strand at 4889.556 kb on + strand, within Pf1N1B4_4429 at 4889.557 kb on - strand, within Pf1N1B4_4429 at 4889.649 kb on + strand, within Pf1N1B4_4429 at 4889.649 kb on + strand, within Pf1N1B4_4429 at 4889.649 kb on + strand, within Pf1N1B4_4429 at 4889.877 kb on + strand at 4889.877 kb on + strand at 4889.878 kb on - strand at 4889.878 kb on - strand at 4889.914 kb on - strand at 4890.185 kb on - strand at 4890.185 kb on - strand at 4890.274 kb on - strand, within Pf1N1B4_4430 at 4890.292 kb on + strand, within Pf1N1B4_4430 at 4890.293 kb on - strand, within Pf1N1B4_4430 at 4890.555 kb on - strand, within Pf1N1B4_4430 at 4890.860 kb on + strand, within Pf1N1B4_4430
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 4,888,391 + Pf1N1B4_4427 0.88 +0.8 4,888,395 + Pf1N1B4_4427 0.89 +1.2 4,888,395 + Pf1N1B4_4427 0.89 +0.9 4,888,763 - Pf1N1B4_4428 0.35 +2.2 4,889,305 + +0.2 4,889,556 + Pf1N1B4_4429 0.39 -1.0 4,889,557 - Pf1N1B4_4429 0.39 -0.2 4,889,649 + Pf1N1B4_4429 0.54 -0.7 4,889,649 + Pf1N1B4_4429 0.54 -1.4 4,889,649 + Pf1N1B4_4429 0.54 +0.2 4,889,877 + -0.1 4,889,877 + -0.3 4,889,878 - -0.1 4,889,878 - -2.0 4,889,914 - +1.7 4,890,185 - -0.4 4,890,185 - -0.1 4,890,274 - Pf1N1B4_4430 0.13 +2.6 4,890,292 + Pf1N1B4_4430 0.14 +0.6 4,890,293 - Pf1N1B4_4430 0.14 +1.6 4,890,555 - Pf1N1B4_4430 0.23 +1.2 4,890,860 + Pf1N1B4_4430 0.34 -0.2
Or see this region's nucleotide sequence