Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4274

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4273 and Pf1N1B4_4274 are separated by 311 nucleotidesPf1N1B4_4274 and Pf1N1B4_4275 are separated by 172 nucleotides Pf1N1B4_4273 - Predicted transcriptional regulator of the myo-inositol catabolic operon, at 4,737,166 to 4,738,086 _4273 Pf1N1B4_4274 - 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain, at 4,738,398 to 4,740,335 _4274 Pf1N1B4_4275 - Inosose dehydratase (EC 4.2.1.44), at 4,740,508 to 4,741,401 _4275 Position (kb) 4738 4739 4740 4741Strain fitness (log2 ratio) -2 -1 0 1 2at 4737.539 kb on + strand, within Pf1N1B4_4273at 4737.539 kb on + strand, within Pf1N1B4_4273at 4737.587 kb on + strand, within Pf1N1B4_4273at 4737.587 kb on + strandat 4737.587 kb on + strand, within Pf1N1B4_4273at 4737.587 kb on + strandat 4737.588 kb on - strand, within Pf1N1B4_4273at 4737.761 kb on + strand, within Pf1N1B4_4273at 4737.875 kb on - strand, within Pf1N1B4_4273at 4737.875 kb on - strand, within Pf1N1B4_4273at 4737.941 kb on + strand, within Pf1N1B4_4273at 4737.941 kb on + strandat 4737.942 kb on - strand, within Pf1N1B4_4273at 4737.942 kb on - strand, within Pf1N1B4_4273at 4737.942 kb on - strand, within Pf1N1B4_4273at 4737.980 kb on + strand, within Pf1N1B4_4273at 4737.981 kb on - strand, within Pf1N1B4_4273at 4738.087 kb on - strandat 4738.144 kb on + strandat 4738.144 kb on + strandat 4738.145 kb on - strandat 4738.145 kb on - strandat 4738.456 kb on + strandat 4738.470 kb on + strandat 4738.521 kb on + strandat 4738.884 kb on + strand, within Pf1N1B4_4274at 4738.884 kb on + strand, within Pf1N1B4_4274at 4738.884 kb on + strand, within Pf1N1B4_4274at 4739.209 kb on - strandat 4739.401 kb on + strand, within Pf1N1B4_4274at 4739.401 kb on + strand, within Pf1N1B4_4274at 4739.402 kb on - strand, within Pf1N1B4_4274at 4739.402 kb on - strand, within Pf1N1B4_4274at 4739.898 kb on + strand, within Pf1N1B4_4274at 4739.899 kb on - strand, within Pf1N1B4_4274at 4740.339 kb on - strandat 4740.350 kb on - strandat 4740.411 kb on + strandat 4740.411 kb on + strandat 4740.411 kb on + strandat 4740.411 kb on + strandat 4740.411 kb on + strandat 4740.425 kb on - strandat 4740.494 kb on + strandat 4740.691 kb on + strand, within Pf1N1B4_4275at 4740.786 kb on - strand, within Pf1N1B4_4275at 4740.965 kb on - strand, within Pf1N1B4_4275at 4741.069 kb on + strand, within Pf1N1B4_4275at 4741.069 kb on + strand, within Pf1N1B4_4275at 4741.070 kb on - strand, within Pf1N1B4_4275at 4741.070 kb on - strandat 4741.070 kb on - strand, within Pf1N1B4_4275

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,737,539 + Pf1N1B4_4273 0.40 -0.8
4,737,539 + Pf1N1B4_4273 0.40 +0.6
4,737,587 + Pf1N1B4_4273 0.46 +0.0
4,737,587 + -2.0
4,737,587 + Pf1N1B4_4273 0.46 +0.2
4,737,587 + -0.4
4,737,588 - Pf1N1B4_4273 0.46 +1.9
4,737,761 + Pf1N1B4_4273 0.65 -0.4
4,737,875 - Pf1N1B4_4273 0.77 +0.6
4,737,875 - Pf1N1B4_4273 0.77 +2.1
4,737,941 + Pf1N1B4_4273 0.84 +0.2
4,737,941 + +1.2
4,737,942 - Pf1N1B4_4273 0.84 +2.4
4,737,942 - Pf1N1B4_4273 0.84 -0.4
4,737,942 - Pf1N1B4_4273 0.84 +2.2
4,737,980 + Pf1N1B4_4273 0.88 +0.8
4,737,981 - Pf1N1B4_4273 0.88 +0.3
4,738,087 - +0.6
4,738,144 + +0.6
4,738,144 + +0.6
4,738,145 - -0.4
4,738,145 - -1.0
4,738,456 + +0.0
4,738,470 + -0.4
4,738,521 + +1.6
4,738,884 + Pf1N1B4_4274 0.25 -1.7
4,738,884 + Pf1N1B4_4274 0.25 +0.3
4,738,884 + Pf1N1B4_4274 0.25 +0.0
4,739,209 - +0.6
4,739,401 + Pf1N1B4_4274 0.52 -0.4
4,739,401 + Pf1N1B4_4274 0.52 -1.4
4,739,402 - Pf1N1B4_4274 0.52 +0.6
4,739,402 - Pf1N1B4_4274 0.52 -1.4
4,739,898 + Pf1N1B4_4274 0.77 -1.4
4,739,899 - Pf1N1B4_4274 0.77 -1.4
4,740,339 - -0.7
4,740,350 - +0.1
4,740,411 + +0.2
4,740,411 + +1.5
4,740,411 + -0.1
4,740,411 + -1.4
4,740,411 + -1.4
4,740,425 - -2.4
4,740,494 + -0.1
4,740,691 + Pf1N1B4_4275 0.20 -0.4
4,740,786 - Pf1N1B4_4275 0.31 -0.4
4,740,965 - Pf1N1B4_4275 0.51 -0.6
4,741,069 + Pf1N1B4_4275 0.63 +0.0
4,741,069 + Pf1N1B4_4275 0.63 -1.4
4,741,070 - Pf1N1B4_4275 0.63 +0.0
4,741,070 - -0.4
4,741,070 - Pf1N1B4_4275 0.63 +0.2

Or see this region's nucleotide sequence