Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4190

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt Pf1N1B4_4190 - transcriptional regulator, AraC family, at 4,641,410 to 4,642,603 _4190 Position (kb) 4641 4642 4643Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4640.465 kb on + strandat 4640.466 kb on - strandat 4640.676 kb on - strandat 4640.841 kb on - strandat 4640.841 kb on - strandat 4640.938 kb on + strandat 4640.939 kb on - strandat 4640.939 kb on - strandat 4640.939 kb on - strandat 4640.985 kb on + strandat 4641.097 kb on + strandat 4641.170 kb on - strandat 4641.254 kb on + strandat 4641.304 kb on - strandat 4641.324 kb on + strandat 4641.446 kb on + strandat 4641.446 kb on + strandat 4641.569 kb on + strand, within Pf1N1B4_4190at 4641.569 kb on + strand, within Pf1N1B4_4190at 4641.570 kb on - strandat 4641.632 kb on - strandat 4641.632 kb on - strand, within Pf1N1B4_4190at 4641.723 kb on + strand, within Pf1N1B4_4190at 4641.724 kb on - strand, within Pf1N1B4_4190at 4641.728 kb on + strandat 4641.729 kb on - strand, within Pf1N1B4_4190at 4641.868 kb on + strand, within Pf1N1B4_4190at 4641.868 kb on + strand, within Pf1N1B4_4190at 4641.872 kb on + strandat 4641.872 kb on + strand, within Pf1N1B4_4190at 4641.872 kb on + strand, within Pf1N1B4_4190at 4641.873 kb on - strand, within Pf1N1B4_4190at 4641.873 kb on - strand, within Pf1N1B4_4190at 4641.873 kb on - strand, within Pf1N1B4_4190at 4641.873 kb on - strand, within Pf1N1B4_4190at 4642.136 kb on + strandat 4642.137 kb on - strand, within Pf1N1B4_4190at 4642.151 kb on - strandat 4642.201 kb on - strand, within Pf1N1B4_4190at 4642.320 kb on + strand, within Pf1N1B4_4190at 4642.320 kb on + strand, within Pf1N1B4_4190at 4642.320 kb on + strand, within Pf1N1B4_4190at 4642.320 kb on + strand, within Pf1N1B4_4190at 4642.321 kb on - strand, within Pf1N1B4_4190at 4642.321 kb on - strand, within Pf1N1B4_4190at 4642.350 kb on + strand, within Pf1N1B4_4190at 4642.458 kb on - strand, within Pf1N1B4_4190at 4642.595 kb on + strandat 4642.654 kb on + strandat 4642.654 kb on + strandat 4642.654 kb on + strandat 4642.654 kb on + strandat 4642.655 kb on - strandat 4642.717 kb on + strandat 4642.717 kb on + strandat 4642.718 kb on - strandat 4642.718 kb on - strandat 4642.718 kb on - strandat 4642.736 kb on + strandat 4642.864 kb on + strandat 4642.865 kb on - strandat 4642.951 kb on + strandat 4642.977 kb on + strandat 4643.000 kb on + strandat 4643.001 kb on - strandat 4643.015 kb on + strandat 4643.016 kb on - strandat 4643.048 kb on - strandat 4643.068 kb on - strandat 4643.129 kb on + strandat 4643.197 kb on - strandat 4643.197 kb on - strandat 4643.402 kb on - strandat 4643.425 kb on - strandat 4643.502 kb on + strandat 4643.502 kb on + strandat 4643.502 kb on + strandat 4643.502 kb on + strandat 4643.503 kb on - strandat 4643.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,640,465 + -0.4
4,640,466 - +0.1
4,640,676 - +1.2
4,640,841 - +0.2
4,640,841 - -1.4
4,640,938 + -1.2
4,640,939 - +0.8
4,640,939 - -0.1
4,640,939 - +0.1
4,640,985 + -0.9
4,641,097 + -0.8
4,641,170 - +0.6
4,641,254 + +0.1
4,641,304 - +0.1
4,641,324 + -0.4
4,641,446 + +0.2
4,641,446 + -0.1
4,641,569 + Pf1N1B4_4190 0.13 +0.6
4,641,569 + Pf1N1B4_4190 0.13 -0.6
4,641,570 - +0.6
4,641,632 - +1.6
4,641,632 - Pf1N1B4_4190 0.19 +0.6
4,641,723 + Pf1N1B4_4190 0.26 +0.4
4,641,724 - Pf1N1B4_4190 0.26 +1.1
4,641,728 + +1.0
4,641,729 - Pf1N1B4_4190 0.27 +1.6
4,641,868 + Pf1N1B4_4190 0.38 -0.0
4,641,868 + Pf1N1B4_4190 0.38 -0.4
4,641,872 + +0.6
4,641,872 + Pf1N1B4_4190 0.39 +2.7
4,641,872 + Pf1N1B4_4190 0.39 +0.2
4,641,873 - Pf1N1B4_4190 0.39 +0.5
4,641,873 - Pf1N1B4_4190 0.39 -2.4
4,641,873 - Pf1N1B4_4190 0.39 -0.5
4,641,873 - Pf1N1B4_4190 0.39 +0.6
4,642,136 + +0.6
4,642,137 - Pf1N1B4_4190 0.61 +0.5
4,642,151 - +0.6
4,642,201 - Pf1N1B4_4190 0.66 +0.6
4,642,320 + Pf1N1B4_4190 0.76 +1.0
4,642,320 + Pf1N1B4_4190 0.76 +1.0
4,642,320 + Pf1N1B4_4190 0.76 +1.2
4,642,320 + Pf1N1B4_4190 0.76 +1.8
4,642,321 - Pf1N1B4_4190 0.76 +0.9
4,642,321 - Pf1N1B4_4190 0.76 +1.1
4,642,350 + Pf1N1B4_4190 0.79 -0.4
4,642,458 - Pf1N1B4_4190 0.88 +1.0
4,642,595 + -0.0
4,642,654 + -0.8
4,642,654 + +1.0
4,642,654 + +0.5
4,642,654 + +0.4
4,642,655 - -1.4
4,642,717 + +1.2
4,642,717 + -2.9
4,642,718 - +0.2
4,642,718 - +0.2
4,642,718 - -0.0
4,642,736 + -0.4
4,642,864 + -1.1
4,642,865 - -0.9
4,642,951 + +1.4
4,642,977 + +0.2
4,643,000 + -1.5
4,643,001 - -0.9
4,643,015 + +0.8
4,643,016 - -0.9
4,643,048 - +1.6
4,643,068 - -2.4
4,643,129 + -0.0
4,643,197 - -0.4
4,643,197 - -0.4
4,643,402 - +2.3
4,643,425 - +0.4
4,643,502 + -0.1
4,643,502 + +0.2
4,643,502 + +0.1
4,643,502 + -0.0
4,643,503 - +1.2
4,643,534 - -0.8

Or see this region's nucleotide sequence