Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4150 and Pf1N1B4_4151 are separated by 81 nucleotides Pf1N1B4_4151 and Pf1N1B4_4152 are separated by 24 nucleotides Pf1N1B4_4152 and Pf1N1B4_4153 are separated by 177 nucleotides
Pf1N1B4_4150 - Transcriptional regulator, AraC family, at 4,596,054 to 4,596,971
_4150
Pf1N1B4_4151 - FIG00960153: hypothetical protein, at 4,597,053 to 4,597,310
_4151
Pf1N1B4_4152 - FIG00963947: hypothetical protein, at 4,597,335 to 4,597,625
_4152
Pf1N1B4_4153 - Glucose 1-dehydrogenase (EC 1.1.1.47), at 4,597,803 to 4,598,567
_4153
Position (kb)
4597
4598 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4596.406 kb on + strand, within Pf1N1B4_4150 at 4596.445 kb on + strand, within Pf1N1B4_4150 at 4596.445 kb on + strand, within Pf1N1B4_4150 at 4596.446 kb on - strand, within Pf1N1B4_4150 at 4596.446 kb on - strand, within Pf1N1B4_4150 at 4596.446 kb on - strand, within Pf1N1B4_4150 at 4596.655 kb on + strand, within Pf1N1B4_4150 at 4596.721 kb on + strand, within Pf1N1B4_4150 at 4596.721 kb on + strand, within Pf1N1B4_4150 at 4596.722 kb on - strand, within Pf1N1B4_4150 at 4596.874 kb on + strand, within Pf1N1B4_4150 at 4596.874 kb on + strand, within Pf1N1B4_4150 at 4596.874 kb on + strand, within Pf1N1B4_4150 at 4596.874 kb on + strand at 4596.875 kb on - strand, within Pf1N1B4_4150 at 4596.875 kb on - strand, within Pf1N1B4_4150 at 4596.929 kb on - strand at 4596.929 kb on - strand at 4597.085 kb on - strand, within Pf1N1B4_4151 at 4597.147 kb on + strand, within Pf1N1B4_4151 at 4597.147 kb on + strand at 4597.148 kb on - strand, within Pf1N1B4_4151 at 4597.148 kb on - strand, within Pf1N1B4_4151 at 4597.148 kb on - strand, within Pf1N1B4_4151 at 4597.159 kb on - strand, within Pf1N1B4_4151 at 4597.187 kb on + strand, within Pf1N1B4_4151 at 4597.188 kb on - strand, within Pf1N1B4_4151 at 4597.188 kb on - strand, within Pf1N1B4_4151 at 4597.188 kb on - strand, within Pf1N1B4_4151 at 4597.336 kb on + strand at 4597.365 kb on - strand, within Pf1N1B4_4152 at 4597.541 kb on - strand, within Pf1N1B4_4152 at 4597.541 kb on - strand, within Pf1N1B4_4152 at 4597.695 kb on - strand at 4597.703 kb on + strand at 4597.704 kb on - strand at 4597.704 kb on - strand at 4598.129 kb on - strand, within Pf1N1B4_4153 at 4598.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 4,596,406 + Pf1N1B4_4150 0.38 +2.0 4,596,445 + Pf1N1B4_4150 0.43 -3.7 4,596,445 + Pf1N1B4_4150 0.43 -0.5 4,596,446 - Pf1N1B4_4150 0.43 +0.0 4,596,446 - Pf1N1B4_4150 0.43 +0.7 4,596,446 - Pf1N1B4_4150 0.43 -0.5 4,596,655 + Pf1N1B4_4150 0.65 -0.1 4,596,721 + Pf1N1B4_4150 0.73 +1.1 4,596,721 + Pf1N1B4_4150 0.73 -1.1 4,596,722 - Pf1N1B4_4150 0.73 +0.7 4,596,874 + Pf1N1B4_4150 0.89 +0.2 4,596,874 + Pf1N1B4_4150 0.89 +2.0 4,596,874 + Pf1N1B4_4150 0.89 -1.5 4,596,874 + -0.3 4,596,875 - Pf1N1B4_4150 0.89 -0.3 4,596,875 - Pf1N1B4_4150 0.89 -0.7 4,596,929 - -1.1 4,596,929 - -2.5 4,597,085 - Pf1N1B4_4151 0.12 +0.7 4,597,147 + Pf1N1B4_4151 0.36 +0.8 4,597,147 + +1.7 4,597,148 - Pf1N1B4_4151 0.37 +3.2 4,597,148 - Pf1N1B4_4151 0.37 -1.9 4,597,148 - Pf1N1B4_4151 0.37 +1.0 4,597,159 - Pf1N1B4_4151 0.41 +0.3 4,597,187 + Pf1N1B4_4151 0.52 +0.5 4,597,188 - Pf1N1B4_4151 0.52 +0.1 4,597,188 - Pf1N1B4_4151 0.52 +1.2 4,597,188 - Pf1N1B4_4151 0.52 +1.1 4,597,336 + +0.6 4,597,365 - Pf1N1B4_4152 0.10 +0.7 4,597,541 - Pf1N1B4_4152 0.71 -0.8 4,597,541 - Pf1N1B4_4152 0.71 -0.6 4,597,695 - -0.8 4,597,703 + -0.9 4,597,704 - +0.2 4,597,704 - -0.8 4,598,129 - Pf1N1B4_4153 0.43 -0.1 4,598,129 - +0.7
Or see this region's nucleotide sequence