Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4139

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4138 and Pf1N1B4_4139 overlap by 35 nucleotidesPf1N1B4_4139 and Pf1N1B4_4140 are separated by 941 nucleotides Pf1N1B4_4138 - Dihydroflavonol-4-reductase (EC 1.1.1.219), at 4,580,997 to 4,581,773 _4138 Pf1N1B4_4139 - Transcriptional regulator, MerR family, at 4,581,739 to 4,582,152 _4139 Pf1N1B4_4140 - hypothetical protein, at 4,583,094 to 4,583,225 _4140 Position (kb) 4581 4582 4583Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4580.797 kb on + strandat 4580.797 kb on + strandat 4580.797 kb on + strandat 4580.798 kb on - strandat 4580.798 kb on - strandat 4580.798 kb on - strandat 4581.003 kb on + strandat 4581.003 kb on + strandat 4581.003 kb on + strandat 4581.004 kb on - strandat 4581.070 kb on + strandat 4581.070 kb on + strandat 4581.070 kb on + strandat 4581.070 kb on + strandat 4581.070 kb on + strandat 4581.071 kb on - strandat 4581.071 kb on - strandat 4581.071 kb on - strandat 4581.071 kb on - strandat 4581.071 kb on - strandat 4581.088 kb on + strandat 4581.129 kb on + strand, within Pf1N1B4_4138at 4581.129 kb on + strand, within Pf1N1B4_4138at 4581.129 kb on + strand, within Pf1N1B4_4138at 4581.130 kb on - strand, within Pf1N1B4_4138at 4581.130 kb on - strand, within Pf1N1B4_4138at 4581.130 kb on - strand, within Pf1N1B4_4138at 4581.130 kb on - strand, within Pf1N1B4_4138at 4581.130 kb on - strand, within Pf1N1B4_4138at 4581.130 kb on - strand, within Pf1N1B4_4138at 4581.472 kb on + strand, within Pf1N1B4_4138at 4581.472 kb on + strand, within Pf1N1B4_4138at 4581.473 kb on - strand, within Pf1N1B4_4138at 4581.529 kb on + strand, within Pf1N1B4_4138at 4581.529 kb on + strand, within Pf1N1B4_4138at 4581.530 kb on - strand, within Pf1N1B4_4138at 4581.612 kb on + strand, within Pf1N1B4_4138at 4581.660 kb on + strand, within Pf1N1B4_4138at 4581.660 kb on + strand, within Pf1N1B4_4138at 4581.679 kb on - strand, within Pf1N1B4_4138at 4582.043 kb on + strand, within Pf1N1B4_4139at 4582.043 kb on + strand, within Pf1N1B4_4139at 4582.044 kb on - strand, within Pf1N1B4_4139at 4582.044 kb on - strand, within Pf1N1B4_4139at 4582.095 kb on - strand, within Pf1N1B4_4139at 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.144 kb on + strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.145 kb on - strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.148 kb on + strandat 4582.149 kb on - strandat 4582.149 kb on - strandat 4582.149 kb on - strandat 4582.149 kb on - strandat 4582.149 kb on - strandat 4582.149 kb on - strandat 4582.149 kb on - strandat 4582.290 kb on + strandat 4582.290 kb on + strandat 4582.290 kb on + strandat 4582.290 kb on + strandat 4582.290 kb on + strandat 4582.290 kb on + strandat 4582.290 kb on + strandat 4582.291 kb on - strandat 4582.291 kb on - strandat 4582.291 kb on - strandat 4582.291 kb on - strandat 4582.479 kb on - strandat 4582.479 kb on - strandat 4582.517 kb on - strandat 4582.517 kb on - strandat 4582.517 kb on - strandat 4582.698 kb on + strandat 4582.699 kb on - strandat 4582.699 kb on - strandat 4582.699 kb on - strandat 4582.699 kb on - strandat 4582.705 kb on - strandat 4582.705 kb on - strandat 4582.707 kb on - strandat 4582.810 kb on - strandat 4582.834 kb on - strandat 4582.863 kb on - strandat 4582.940 kb on - strandat 4582.941 kb on + strandat 4582.942 kb on - strandat 4583.001 kb on + strandat 4583.002 kb on - strandat 4583.031 kb on - strandat 4583.031 kb on - strandat 4583.031 kb on - strandat 4583.031 kb on - strandat 4583.036 kb on - strandat 4583.036 kb on - strandat 4583.064 kb on - strandat 4583.110 kb on - strand, within Pf1N1B4_4140at 4583.110 kb on - strand, within Pf1N1B4_4140at 4583.110 kb on - strand, within Pf1N1B4_4140at 4583.125 kb on + strand, within Pf1N1B4_4140at 4583.126 kb on - strand, within Pf1N1B4_4140

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,580,797 + +1.2
4,580,797 + -0.5
4,580,797 + -1.3
4,580,798 - +2.7
4,580,798 - -0.3
4,580,798 - -0.8
4,581,003 + +0.7
4,581,003 + +0.7
4,581,003 + -1.9
4,581,004 - -0.0
4,581,070 + -0.3
4,581,070 + +0.7
4,581,070 + +1.4
4,581,070 + +0.5
4,581,070 + -2.3
4,581,071 - -0.3
4,581,071 - -0.3
4,581,071 - -1.9
4,581,071 - +0.4
4,581,071 - +0.7
4,581,088 + +2.5
4,581,129 + Pf1N1B4_4138 0.17 -0.7
4,581,129 + Pf1N1B4_4138 0.17 -0.8
4,581,129 + Pf1N1B4_4138 0.17 -0.0
4,581,130 - Pf1N1B4_4138 0.17 +0.4
4,581,130 - Pf1N1B4_4138 0.17 +1.2
4,581,130 - Pf1N1B4_4138 0.17 -3.1
4,581,130 - Pf1N1B4_4138 0.17 +0.1
4,581,130 - Pf1N1B4_4138 0.17 -0.8
4,581,130 - Pf1N1B4_4138 0.17 +1.2
4,581,472 + Pf1N1B4_4138 0.61 -1.7
4,581,472 + Pf1N1B4_4138 0.61 +1.1
4,581,473 - Pf1N1B4_4138 0.61 +0.7
4,581,529 + Pf1N1B4_4138 0.68 -1.3
4,581,529 + Pf1N1B4_4138 0.68 +0.7
4,581,530 - Pf1N1B4_4138 0.69 +1.0
4,581,612 + Pf1N1B4_4138 0.79 -0.8
4,581,660 + Pf1N1B4_4138 0.85 +0.8
4,581,660 + Pf1N1B4_4138 0.85 -1.3
4,581,679 - Pf1N1B4_4138 0.88 +1.1
4,582,043 + Pf1N1B4_4139 0.73 +0.7
4,582,043 + Pf1N1B4_4139 0.73 -1.7
4,582,044 - Pf1N1B4_4139 0.74 +0.1
4,582,044 - Pf1N1B4_4139 0.74 -0.8
4,582,095 - Pf1N1B4_4139 0.86 -2.1
4,582,144 + +0.4
4,582,144 + -0.7
4,582,144 + -0.7
4,582,144 + +1.2
4,582,144 + -0.3
4,582,144 + -0.3
4,582,144 + +0.2
4,582,144 + +0.2
4,582,144 + -0.6
4,582,144 + +0.1
4,582,144 + +0.5
4,582,144 + +0.1
4,582,145 - -1.7
4,582,145 - +2.5
4,582,145 - -0.3
4,582,145 - -0.8
4,582,145 - -0.8
4,582,145 - +1.1
4,582,145 - +0.7
4,582,145 - -0.4
4,582,145 - -0.3
4,582,145 - -0.9
4,582,145 - +1.1
4,582,145 - +0.3
4,582,145 - -0.5
4,582,145 - -0.0
4,582,148 + +0.1
4,582,148 + -0.3
4,582,148 + +1.5
4,582,148 + +1.7
4,582,148 + +2.0
4,582,148 + +0.5
4,582,148 + +0.2
4,582,148 + +0.7
4,582,148 + -0.3
4,582,148 + +1.2
4,582,149 - +0.2
4,582,149 - +0.9
4,582,149 - -0.4
4,582,149 - -0.9
4,582,149 - -0.3
4,582,149 - -0.3
4,582,149 - +0.2
4,582,290 + -0.7
4,582,290 + -0.1
4,582,290 + -0.3
4,582,290 + +1.4
4,582,290 + -0.9
4,582,290 + +0.2
4,582,290 + -0.1
4,582,291 - -0.9
4,582,291 - +0.3
4,582,291 - -1.9
4,582,291 - -1.7
4,582,479 - +0.9
4,582,479 - -0.2
4,582,517 - -0.9
4,582,517 - -0.8
4,582,517 - +0.7
4,582,698 + -0.3
4,582,699 - +0.7
4,582,699 - +1.2
4,582,699 - -0.3
4,582,699 - -0.8
4,582,705 - +0.7
4,582,705 - +0.3
4,582,707 - -0.3
4,582,810 - -0.6
4,582,834 - -0.6
4,582,863 - +0.7
4,582,940 - -0.1
4,582,941 + -1.6
4,582,942 - -0.3
4,583,001 + -1.3
4,583,002 - +0.0
4,583,031 - -0.9
4,583,031 - +0.8
4,583,031 - +0.9
4,583,031 - -1.1
4,583,036 - -0.3
4,583,036 - +3.1
4,583,064 - -2.3
4,583,110 - Pf1N1B4_4140 0.12 +0.7
4,583,110 - Pf1N1B4_4140 0.12 +0.5
4,583,110 - Pf1N1B4_4140 0.12 -0.3
4,583,125 + Pf1N1B4_4140 0.23 +0.5
4,583,126 - Pf1N1B4_4140 0.24 +0.2

Or see this region's nucleotide sequence