Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4138 and Pf1N1B4_4139 overlap by 35 nucleotides Pf1N1B4_4139 and Pf1N1B4_4140 are separated by 941 nucleotides
Pf1N1B4_4138 - Dihydroflavonol-4-reductase (EC 1.1.1.219), at 4,580,997 to 4,581,773
_4138
Pf1N1B4_4139 - Transcriptional regulator, MerR family, at 4,581,739 to 4,582,152
_4139
Pf1N1B4_4140 - hypothetical protein, at 4,583,094 to 4,583,225
_4140
Position (kb)
4581
4582
4583 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4580.797 kb on + strand at 4580.797 kb on + strand at 4580.797 kb on + strand at 4580.798 kb on - strand at 4580.798 kb on - strand at 4580.798 kb on - strand at 4581.003 kb on + strand at 4581.003 kb on + strand at 4581.003 kb on + strand at 4581.004 kb on - strand at 4581.070 kb on + strand at 4581.070 kb on + strand at 4581.070 kb on + strand at 4581.070 kb on + strand at 4581.070 kb on + strand at 4581.071 kb on - strand at 4581.071 kb on - strand at 4581.071 kb on - strand at 4581.071 kb on - strand at 4581.071 kb on - strand at 4581.088 kb on + strand at 4581.129 kb on + strand, within Pf1N1B4_4138 at 4581.129 kb on + strand, within Pf1N1B4_4138 at 4581.129 kb on + strand, within Pf1N1B4_4138 at 4581.130 kb on - strand, within Pf1N1B4_4138 at 4581.130 kb on - strand, within Pf1N1B4_4138 at 4581.130 kb on - strand, within Pf1N1B4_4138 at 4581.130 kb on - strand, within Pf1N1B4_4138 at 4581.130 kb on - strand, within Pf1N1B4_4138 at 4581.130 kb on - strand, within Pf1N1B4_4138 at 4581.472 kb on + strand, within Pf1N1B4_4138 at 4581.472 kb on + strand, within Pf1N1B4_4138 at 4581.473 kb on - strand, within Pf1N1B4_4138 at 4581.529 kb on + strand, within Pf1N1B4_4138 at 4581.529 kb on + strand, within Pf1N1B4_4138 at 4581.530 kb on - strand, within Pf1N1B4_4138 at 4581.612 kb on + strand, within Pf1N1B4_4138 at 4581.660 kb on + strand, within Pf1N1B4_4138 at 4581.660 kb on + strand, within Pf1N1B4_4138 at 4581.679 kb on - strand, within Pf1N1B4_4138 at 4582.043 kb on + strand, within Pf1N1B4_4139 at 4582.043 kb on + strand, within Pf1N1B4_4139 at 4582.044 kb on - strand, within Pf1N1B4_4139 at 4582.044 kb on - strand, within Pf1N1B4_4139 at 4582.095 kb on - strand, within Pf1N1B4_4139 at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.144 kb on + strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.145 kb on - strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.148 kb on + strand at 4582.149 kb on - strand at 4582.149 kb on - strand at 4582.149 kb on - strand at 4582.149 kb on - strand at 4582.149 kb on - strand at 4582.149 kb on - strand at 4582.149 kb on - strand at 4582.290 kb on + strand at 4582.290 kb on + strand at 4582.290 kb on + strand at 4582.290 kb on + strand at 4582.290 kb on + strand at 4582.290 kb on + strand at 4582.290 kb on + strand at 4582.291 kb on - strand at 4582.291 kb on - strand at 4582.291 kb on - strand at 4582.291 kb on - strand at 4582.479 kb on - strand at 4582.479 kb on - strand at 4582.517 kb on - strand at 4582.517 kb on - strand at 4582.517 kb on - strand at 4582.698 kb on + strand at 4582.699 kb on - strand at 4582.699 kb on - strand at 4582.699 kb on - strand at 4582.699 kb on - strand at 4582.705 kb on - strand at 4582.705 kb on - strand at 4582.707 kb on - strand at 4582.810 kb on - strand at 4582.834 kb on - strand at 4582.863 kb on - strand at 4582.940 kb on - strand at 4582.941 kb on + strand at 4582.942 kb on - strand at 4583.001 kb on + strand at 4583.002 kb on - strand at 4583.031 kb on - strand at 4583.031 kb on - strand at 4583.031 kb on - strand at 4583.031 kb on - strand at 4583.036 kb on - strand at 4583.036 kb on - strand at 4583.064 kb on - strand at 4583.110 kb on - strand, within Pf1N1B4_4140 at 4583.110 kb on - strand, within Pf1N1B4_4140 at 4583.110 kb on - strand, within Pf1N1B4_4140 at 4583.125 kb on + strand, within Pf1N1B4_4140 at 4583.126 kb on - strand, within Pf1N1B4_4140
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 4,580,797 + +1.2 4,580,797 + -0.5 4,580,797 + -1.3 4,580,798 - +2.7 4,580,798 - -0.3 4,580,798 - -0.8 4,581,003 + +0.7 4,581,003 + +0.7 4,581,003 + -1.9 4,581,004 - -0.0 4,581,070 + -0.3 4,581,070 + +0.7 4,581,070 + +1.4 4,581,070 + +0.5 4,581,070 + -2.3 4,581,071 - -0.3 4,581,071 - -0.3 4,581,071 - -1.9 4,581,071 - +0.4 4,581,071 - +0.7 4,581,088 + +2.5 4,581,129 + Pf1N1B4_4138 0.17 -0.7 4,581,129 + Pf1N1B4_4138 0.17 -0.8 4,581,129 + Pf1N1B4_4138 0.17 -0.0 4,581,130 - Pf1N1B4_4138 0.17 +0.4 4,581,130 - Pf1N1B4_4138 0.17 +1.2 4,581,130 - Pf1N1B4_4138 0.17 -3.1 4,581,130 - Pf1N1B4_4138 0.17 +0.1 4,581,130 - Pf1N1B4_4138 0.17 -0.8 4,581,130 - Pf1N1B4_4138 0.17 +1.2 4,581,472 + Pf1N1B4_4138 0.61 -1.7 4,581,472 + Pf1N1B4_4138 0.61 +1.1 4,581,473 - Pf1N1B4_4138 0.61 +0.7 4,581,529 + Pf1N1B4_4138 0.68 -1.3 4,581,529 + Pf1N1B4_4138 0.68 +0.7 4,581,530 - Pf1N1B4_4138 0.69 +1.0 4,581,612 + Pf1N1B4_4138 0.79 -0.8 4,581,660 + Pf1N1B4_4138 0.85 +0.8 4,581,660 + Pf1N1B4_4138 0.85 -1.3 4,581,679 - Pf1N1B4_4138 0.88 +1.1 4,582,043 + Pf1N1B4_4139 0.73 +0.7 4,582,043 + Pf1N1B4_4139 0.73 -1.7 4,582,044 - Pf1N1B4_4139 0.74 +0.1 4,582,044 - Pf1N1B4_4139 0.74 -0.8 4,582,095 - Pf1N1B4_4139 0.86 -2.1 4,582,144 + +0.4 4,582,144 + -0.7 4,582,144 + -0.7 4,582,144 + +1.2 4,582,144 + -0.3 4,582,144 + -0.3 4,582,144 + +0.2 4,582,144 + +0.2 4,582,144 + -0.6 4,582,144 + +0.1 4,582,144 + +0.5 4,582,144 + +0.1 4,582,145 - -1.7 4,582,145 - +2.5 4,582,145 - -0.3 4,582,145 - -0.8 4,582,145 - -0.8 4,582,145 - +1.1 4,582,145 - +0.7 4,582,145 - -0.4 4,582,145 - -0.3 4,582,145 - -0.9 4,582,145 - +1.1 4,582,145 - +0.3 4,582,145 - -0.5 4,582,145 - -0.0 4,582,148 + +0.1 4,582,148 + -0.3 4,582,148 + +1.5 4,582,148 + +1.7 4,582,148 + +2.0 4,582,148 + +0.5 4,582,148 + +0.2 4,582,148 + +0.7 4,582,148 + -0.3 4,582,148 + +1.2 4,582,149 - +0.2 4,582,149 - +0.9 4,582,149 - -0.4 4,582,149 - -0.9 4,582,149 - -0.3 4,582,149 - -0.3 4,582,149 - +0.2 4,582,290 + -0.7 4,582,290 + -0.1 4,582,290 + -0.3 4,582,290 + +1.4 4,582,290 + -0.9 4,582,290 + +0.2 4,582,290 + -0.1 4,582,291 - -0.9 4,582,291 - +0.3 4,582,291 - -1.9 4,582,291 - -1.7 4,582,479 - +0.9 4,582,479 - -0.2 4,582,517 - -0.9 4,582,517 - -0.8 4,582,517 - +0.7 4,582,698 + -0.3 4,582,699 - +0.7 4,582,699 - +1.2 4,582,699 - -0.3 4,582,699 - -0.8 4,582,705 - +0.7 4,582,705 - +0.3 4,582,707 - -0.3 4,582,810 - -0.6 4,582,834 - -0.6 4,582,863 - +0.7 4,582,940 - -0.1 4,582,941 + -1.6 4,582,942 - -0.3 4,583,001 + -1.3 4,583,002 - +0.0 4,583,031 - -0.9 4,583,031 - +0.8 4,583,031 - +0.9 4,583,031 - -1.1 4,583,036 - -0.3 4,583,036 - +3.1 4,583,064 - -2.3 4,583,110 - Pf1N1B4_4140 0.12 +0.7 4,583,110 - Pf1N1B4_4140 0.12 +0.5 4,583,110 - Pf1N1B4_4140 0.12 -0.3 4,583,125 + Pf1N1B4_4140 0.23 +0.5 4,583,126 - Pf1N1B4_4140 0.24 +0.2
Or see this region's nucleotide sequence