Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4021 and Pf1N1B4_4022 are separated by 221 nucleotides Pf1N1B4_4022 and Pf1N1B4_4023 are separated by 79 nucleotides Pf1N1B4_4023 and Pf1N1B4_4024 are separated by 477 nucleotides
Pf1N1B4_4021 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 4,474,077 to 4,474,733
_4021
Pf1N1B4_4022 - hypothetical protein, at 4,474,955 to 4,475,155
_4022
Pf1N1B4_4023 - hypothetical protein, at 4,475,235 to 4,475,567
_4023
Pf1N1B4_4024 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 4,476,045 to 4,476,425
_4024
Position (kb)
4475
4476 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4474.568 kb on + strand, within Pf1N1B4_4021 at 4474.686 kb on + strand at 4474.723 kb on + strand at 4474.727 kb on + strand at 4474.727 kb on + strand at 4474.727 kb on + strand at 4474.727 kb on + strand at 4474.727 kb on + strand at 4474.727 kb on + strand at 4474.727 kb on + strand at 4474.727 kb on + strand at 4474.728 kb on - strand at 4474.731 kb on + strand at 4474.731 kb on + strand at 4474.731 kb on + strand at 4474.831 kb on + strand at 4474.832 kb on - strand at 4474.835 kb on + strand at 4474.835 kb on + strand at 4474.836 kb on - strand at 4474.869 kb on - strand at 4474.875 kb on + strand at 4474.876 kb on - strand at 4474.876 kb on - strand at 4474.879 kb on + strand at 4474.879 kb on + strand at 4474.879 kb on + strand at 4474.879 kb on + strand at 4474.880 kb on - strand at 4474.880 kb on - strand at 4474.880 kb on - strand at 4474.916 kb on + strand at 4474.917 kb on - strand at 4474.935 kb on - strand at 4474.938 kb on + strand at 4474.938 kb on + strand at 4474.938 kb on + strand at 4475.143 kb on + strand at 4475.153 kb on + strand at 4475.153 kb on + strand at 4475.153 kb on + strand at 4475.153 kb on + strand at 4475.153 kb on + strand at 4475.154 kb on - strand at 4475.234 kb on + strand at 4475.235 kb on - strand at 4475.235 kb on - strand at 4475.340 kb on - strand, within Pf1N1B4_4023 at 4475.361 kb on + strand, within Pf1N1B4_4023 at 4475.480 kb on + strand, within Pf1N1B4_4023 at 4475.493 kb on + strand, within Pf1N1B4_4023 at 4475.493 kb on + strand, within Pf1N1B4_4023 at 4475.493 kb on + strand, within Pf1N1B4_4023 at 4475.493 kb on + strand, within Pf1N1B4_4023 at 4475.516 kb on + strand, within Pf1N1B4_4023 at 4475.516 kb on + strand, within Pf1N1B4_4023 at 4475.516 kb on + strand, within Pf1N1B4_4023 at 4475.530 kb on - strand, within Pf1N1B4_4023 at 4475.530 kb on - strand, within Pf1N1B4_4023 at 4475.693 kb on + strand at 4475.704 kb on + strand at 4475.704 kb on + strand at 4475.705 kb on - strand at 4475.741 kb on + strand at 4475.741 kb on + strand at 4475.742 kb on - strand at 4475.875 kb on + strand at 4475.875 kb on + strand at 4475.875 kb on + strand at 4475.875 kb on + strand at 4475.875 kb on + strand at 4475.875 kb on + strand at 4475.876 kb on - strand at 4475.876 kb on - strand at 4475.876 kb on - strand at 4475.876 kb on - strand at 4475.901 kb on - strand at 4475.978 kb on - strand at 4475.978 kb on - strand at 4476.024 kb on + strand at 4476.165 kb on + strand, within Pf1N1B4_4024 at 4476.166 kb on - strand, within Pf1N1B4_4024 at 4476.168 kb on + strand, within Pf1N1B4_4024 at 4476.168 kb on + strand, within Pf1N1B4_4024 at 4476.168 kb on + strand, within Pf1N1B4_4024 at 4476.169 kb on - strand, within Pf1N1B4_4024 at 4476.169 kb on - strand at 4476.423 kb on + strand at 4476.423 kb on + strand at 4476.423 kb on + strand at 4476.424 kb on - strand at 4476.543 kb on + strand at 4476.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 4,474,568 + Pf1N1B4_4021 0.75 +0.3 4,474,686 + -1.0 4,474,723 + +1.4 4,474,727 + +0.1 4,474,727 + +0.1 4,474,727 + +0.7 4,474,727 + -0.6 4,474,727 + +1.6 4,474,727 + -0.5 4,474,727 + +0.6 4,474,727 + +0.4 4,474,728 - +0.7 4,474,731 + +2.3 4,474,731 + +0.7 4,474,731 + -1.6 4,474,831 + -0.3 4,474,832 - -0.6 4,474,835 + +0.5 4,474,835 + -0.7 4,474,836 - -1.3 4,474,869 - +0.9 4,474,875 + +0.0 4,474,876 - +1.5 4,474,876 - +0.9 4,474,879 + -1.1 4,474,879 + +1.0 4,474,879 + -1.1 4,474,879 + -1.9 4,474,880 - -1.3 4,474,880 - -0.9 4,474,880 - +0.7 4,474,916 + +0.3 4,474,917 - +1.6 4,474,935 - -0.5 4,474,938 + +0.7 4,474,938 + +0.7 4,474,938 + +0.3 4,475,143 + +0.7 4,475,153 + -0.5 4,475,153 + -0.3 4,475,153 + +3.0 4,475,153 + -0.3 4,475,153 + -1.1 4,475,154 - -1.3 4,475,234 + +0.7 4,475,235 - -0.0 4,475,235 - +1.3 4,475,340 - Pf1N1B4_4023 0.32 -0.3 4,475,361 + Pf1N1B4_4023 0.38 +1.2 4,475,480 + Pf1N1B4_4023 0.74 +1.2 4,475,493 + Pf1N1B4_4023 0.77 +1.5 4,475,493 + Pf1N1B4_4023 0.77 +2.0 4,475,493 + Pf1N1B4_4023 0.77 +0.6 4,475,493 + Pf1N1B4_4023 0.77 +0.6 4,475,516 + Pf1N1B4_4023 0.84 -0.3 4,475,516 + Pf1N1B4_4023 0.84 +0.0 4,475,516 + Pf1N1B4_4023 0.84 +1.7 4,475,530 - Pf1N1B4_4023 0.89 +0.5 4,475,530 - Pf1N1B4_4023 0.89 -1.3 4,475,693 + -0.8 4,475,704 + -0.3 4,475,704 + +1.0 4,475,705 - -0.1 4,475,741 + +0.5 4,475,741 + -2.7 4,475,742 - +1.7 4,475,875 + +2.9 4,475,875 + -0.3 4,475,875 + +1.7 4,475,875 + +0.1 4,475,875 + -0.9 4,475,875 + -1.3 4,475,876 - -0.3 4,475,876 - -0.7 4,475,876 - -1.3 4,475,876 - +0.2 4,475,901 - -0.9 4,475,978 - +0.9 4,475,978 - -0.9 4,476,024 + +0.2 4,476,165 + Pf1N1B4_4024 0.31 -0.1 4,476,166 - Pf1N1B4_4024 0.32 +1.0 4,476,168 + Pf1N1B4_4024 0.32 +0.7 4,476,168 + Pf1N1B4_4024 0.32 +0.1 4,476,168 + Pf1N1B4_4024 0.32 +0.7 4,476,169 - Pf1N1B4_4024 0.33 +0.7 4,476,169 - -1.9 4,476,423 + -0.3 4,476,423 + -2.3 4,476,423 + +0.4 4,476,424 - -0.5 4,476,543 + +0.0 4,476,544 - +2.5
Or see this region's nucleotide sequence