Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3982 and Pf1N1B4_3983 are separated by 120 nucleotides Pf1N1B4_3983 and Pf1N1B4_3984 are separated by 39 nucleotides Pf1N1B4_3984 and Pf1N1B4_3985 overlap by 1 nucleotides Pf1N1B4_3985 and Pf1N1B4_3986 are separated by 115 nucleotides
Pf1N1B4_3982 - FIG00953347: hypothetical protein, at 4,423,698 to 4,424,039
_3982
Pf1N1B4_3983 - cI, at 4,424,160 to 4,424,834
_3983
Pf1N1B4_3984 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) , at 4,424,874 to 4,426,829
_3984
Pf1N1B4_3985 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 4,426,829 to 4,427,644
_3985
Pf1N1B4_3986 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 4,427,760 to 4,429,367
_3986
Position (kb)
4424
4425
4426
4427 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4423.942 kb on + strand, within Pf1N1B4_3982 at 4423.942 kb on + strand, within Pf1N1B4_3982 at 4423.943 kb on - strand, within Pf1N1B4_3982 at 4423.943 kb on - strand at 4423.945 kb on + strand, within Pf1N1B4_3982 at 4423.945 kb on + strand, within Pf1N1B4_3982 at 4423.945 kb on + strand, within Pf1N1B4_3982 at 4423.946 kb on - strand, within Pf1N1B4_3982 at 4423.946 kb on - strand, within Pf1N1B4_3982 at 4424.060 kb on + strand at 4424.060 kb on + strand at 4424.061 kb on - strand at 4424.085 kb on + strand at 4424.085 kb on + strand at 4424.086 kb on - strand at 4424.088 kb on + strand at 4424.088 kb on + strand at 4424.088 kb on + strand at 4424.089 kb on - strand at 4424.089 kb on - strand at 4424.089 kb on - strand at 4424.089 kb on - strand at 4424.092 kb on + strand at 4424.092 kb on + strand at 4424.092 kb on + strand at 4424.092 kb on + strand at 4424.092 kb on + strand at 4424.092 kb on + strand at 4424.092 kb on + strand at 4424.092 kb on + strand at 4424.093 kb on - strand at 4424.093 kb on - strand at 4424.093 kb on - strand at 4424.098 kb on - strand at 4424.121 kb on + strand at 4424.121 kb on + strand at 4424.156 kb on + strand at 4424.231 kb on - strand at 4424.231 kb on - strand, within Pf1N1B4_3983 at 4424.282 kb on + strand, within Pf1N1B4_3983 at 4424.282 kb on + strand at 4424.344 kb on - strand, within Pf1N1B4_3983 at 4424.344 kb on - strand, within Pf1N1B4_3983 at 4424.415 kb on + strand, within Pf1N1B4_3983 at 4424.415 kb on + strand, within Pf1N1B4_3983 at 4424.416 kb on - strand at 4424.482 kb on + strand, within Pf1N1B4_3983 at 4424.538 kb on + strand, within Pf1N1B4_3983 at 4424.807 kb on - strand at 4424.833 kb on - strand at 4424.935 kb on + strand at 4424.936 kb on - strand at 4424.936 kb on - strand at 4425.130 kb on + strand, within Pf1N1B4_3984 at 4425.131 kb on - strand, within Pf1N1B4_3984 at 4425.131 kb on - strand, within Pf1N1B4_3984 at 4425.169 kb on + strand, within Pf1N1B4_3984 at 4425.170 kb on - strand, within Pf1N1B4_3984 at 4425.170 kb on - strand, within Pf1N1B4_3984 at 4425.170 kb on - strand, within Pf1N1B4_3984 at 4425.236 kb on - strand, within Pf1N1B4_3984 at 4425.671 kb on - strand, within Pf1N1B4_3984 at 4426.015 kb on + strand, within Pf1N1B4_3984 at 4426.150 kb on + strand, within Pf1N1B4_3984 at 4426.151 kb on - strand, within Pf1N1B4_3984 at 4426.151 kb on - strand, within Pf1N1B4_3984 at 4426.151 kb on - strand, within Pf1N1B4_3984 at 4426.151 kb on - strand, within Pf1N1B4_3984 at 4426.151 kb on - strand, within Pf1N1B4_3984 at 4426.152 kb on + strand, within Pf1N1B4_3984 at 4426.153 kb on - strand, within Pf1N1B4_3984 at 4426.153 kb on - strand, within Pf1N1B4_3984 at 4426.213 kb on + strand, within Pf1N1B4_3984 at 4426.214 kb on - strand, within Pf1N1B4_3984 at 4426.639 kb on + strand at 4426.640 kb on - strand at 4426.640 kb on - strand at 4427.321 kb on + strand, within Pf1N1B4_3985 at 4427.361 kb on + strand, within Pf1N1B4_3985 at 4427.361 kb on + strand, within Pf1N1B4_3985 at 4427.361 kb on + strand, within Pf1N1B4_3985
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 4,423,942 + Pf1N1B4_3982 0.71 +0.6 4,423,942 + Pf1N1B4_3982 0.71 +0.0 4,423,943 - Pf1N1B4_3982 0.72 +0.3 4,423,943 - -0.8 4,423,945 + Pf1N1B4_3982 0.72 +0.2 4,423,945 + Pf1N1B4_3982 0.72 +1.2 4,423,945 + Pf1N1B4_3982 0.72 +0.2 4,423,946 - Pf1N1B4_3982 0.73 -0.3 4,423,946 - Pf1N1B4_3982 0.73 +1.2 4,424,060 + -1.8 4,424,060 + +3.1 4,424,061 - +0.4 4,424,085 + +0.7 4,424,085 + -0.3 4,424,086 - -0.3 4,424,088 + -1.0 4,424,088 + +0.5 4,424,088 + -0.9 4,424,089 - -1.3 4,424,089 - -1.1 4,424,089 - +0.3 4,424,089 - +1.3 4,424,092 + +1.5 4,424,092 + +0.8 4,424,092 + +0.7 4,424,092 + +0.7 4,424,092 + -0.7 4,424,092 + +0.7 4,424,092 + -1.8 4,424,092 + +0.3 4,424,093 - +0.0 4,424,093 - -0.8 4,424,093 - +0.7 4,424,098 - +1.7 4,424,121 + +1.3 4,424,121 + -0.5 4,424,156 + -0.5 4,424,231 - +0.3 4,424,231 - Pf1N1B4_3983 0.11 -0.8 4,424,282 + Pf1N1B4_3983 0.18 +1.9 4,424,282 + -1.3 4,424,344 - Pf1N1B4_3983 0.27 -0.3 4,424,344 - Pf1N1B4_3983 0.27 +0.2 4,424,415 + Pf1N1B4_3983 0.38 +0.5 4,424,415 + Pf1N1B4_3983 0.38 +1.2 4,424,416 - -0.3 4,424,482 + Pf1N1B4_3983 0.48 -0.3 4,424,538 + Pf1N1B4_3983 0.56 -0.3 4,424,807 - +0.7 4,424,833 - +1.7 4,424,935 + +0.5 4,424,936 - -0.3 4,424,936 - -0.8 4,425,130 + Pf1N1B4_3984 0.13 +1.7 4,425,131 - Pf1N1B4_3984 0.13 -0.3 4,425,131 - Pf1N1B4_3984 0.13 +1.1 4,425,169 + Pf1N1B4_3984 0.15 +0.2 4,425,170 - Pf1N1B4_3984 0.15 -2.3 4,425,170 - Pf1N1B4_3984 0.15 +0.7 4,425,170 - Pf1N1B4_3984 0.15 +0.3 4,425,236 - Pf1N1B4_3984 0.19 +1.2 4,425,671 - Pf1N1B4_3984 0.41 +0.7 4,426,015 + Pf1N1B4_3984 0.58 -0.7 4,426,150 + Pf1N1B4_3984 0.65 +0.2 4,426,151 - Pf1N1B4_3984 0.65 +0.6 4,426,151 - Pf1N1B4_3984 0.65 +0.6 4,426,151 - Pf1N1B4_3984 0.65 -0.3 4,426,151 - Pf1N1B4_3984 0.65 +0.7 4,426,151 - Pf1N1B4_3984 0.65 +2.3 4,426,152 + Pf1N1B4_3984 0.65 +0.7 4,426,153 - Pf1N1B4_3984 0.65 -1.3 4,426,153 - Pf1N1B4_3984 0.65 +2.9 4,426,213 + Pf1N1B4_3984 0.68 +1.7 4,426,214 - Pf1N1B4_3984 0.69 +0.5 4,426,639 + -0.7 4,426,640 - +0.3 4,426,640 - +0.1 4,427,321 + Pf1N1B4_3985 0.60 -1.9 4,427,361 + Pf1N1B4_3985 0.65 -0.3 4,427,361 + Pf1N1B4_3985 0.65 +0.2 4,427,361 + Pf1N1B4_3985 0.65 +0.3
Or see this region's nucleotide sequence