Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_383 and Pf1N1B4_384 are separated by 41 nucleotides Pf1N1B4_384 and Pf1N1B4_385 are separated by 158 nucleotides Pf1N1B4_385 and Pf1N1B4_386 are separated by 87 nucleotides
Pf1N1B4_383 - Collagenase and related proteases, at 453,554 to 454,156
_383
Pf1N1B4_384 - proteinase inhibitor, at 454,198 to 454,452
_384
Pf1N1B4_385 - Translation initiation factor 2 (IF-2; GTPase), at 454,611 to 455,078
_385
Pf1N1B4_386 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 455,166 to 456,605
_386
Position (kb) 454
455 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.228 kb on + strand at 453.229 kb on - strand at 453.316 kb on + strand at 453.317 kb on - strand at 453.327 kb on - strand at 453.327 kb on - strand at 453.327 kb on - strand at 453.355 kb on + strand at 453.471 kb on - strand at 453.471 kb on - strand at 453.471 kb on - strand at 453.537 kb on - strand at 453.545 kb on + strand at 453.545 kb on + strand at 453.546 kb on - strand at 453.546 kb on - strand at 453.546 kb on - strand at 453.546 kb on - strand at 453.548 kb on - strand at 453.555 kb on + strand at 453.555 kb on + strand at 453.666 kb on + strand, within Pf1N1B4_383 at 453.666 kb on + strand at 453.666 kb on + strand, within Pf1N1B4_383 at 453.667 kb on - strand, within Pf1N1B4_383 at 453.667 kb on - strand, within Pf1N1B4_383 at 453.667 kb on - strand, within Pf1N1B4_383 at 453.667 kb on - strand, within Pf1N1B4_383 at 453.732 kb on - strand, within Pf1N1B4_383 at 453.735 kb on - strand, within Pf1N1B4_383 at 453.756 kb on + strand, within Pf1N1B4_383 at 453.756 kb on + strand at 453.756 kb on + strand, within Pf1N1B4_383 at 453.756 kb on + strand, within Pf1N1B4_383 at 453.757 kb on - strand, within Pf1N1B4_383 at 453.757 kb on - strand, within Pf1N1B4_383 at 453.757 kb on - strand, within Pf1N1B4_383 at 453.757 kb on - strand, within Pf1N1B4_383 at 453.870 kb on + strand, within Pf1N1B4_383 at 453.870 kb on + strand, within Pf1N1B4_383 at 453.870 kb on + strand, within Pf1N1B4_383 at 453.871 kb on - strand, within Pf1N1B4_383 at 453.871 kb on - strand, within Pf1N1B4_383 at 454.017 kb on + strand at 454.138 kb on + strand at 454.138 kb on + strand at 454.139 kb on - strand at 454.139 kb on - strand at 454.162 kb on + strand at 454.163 kb on - strand at 454.163 kb on - strand at 454.163 kb on - strand at 454.342 kb on - strand, within Pf1N1B4_384 at 454.351 kb on + strand, within Pf1N1B4_384 at 454.351 kb on + strand, within Pf1N1B4_384 at 454.352 kb on - strand, within Pf1N1B4_384 at 454.352 kb on - strand, within Pf1N1B4_384 at 454.516 kb on + strand at 454.613 kb on - strand at 454.819 kb on - strand, within Pf1N1B4_385 at 455.034 kb on + strand at 455.107 kb on + strand at 455.107 kb on + strand at 455.108 kb on - strand at 455.108 kb on - strand at 455.108 kb on - strand at 455.108 kb on - strand at 455.108 kb on - strand at 455.108 kb on - strand at 455.109 kb on + strand at 455.109 kb on + strand at 455.109 kb on + strand at 455.109 kb on + strand at 455.110 kb on - strand at 455.110 kb on - strand at 455.110 kb on - strand at 455.110 kb on - strand at 455.440 kb on + strand, within Pf1N1B4_386 at 455.440 kb on + strand, within Pf1N1B4_386 at 455.440 kb on + strand, within Pf1N1B4_386 at 455.440 kb on + strand, within Pf1N1B4_386 at 455.440 kb on + strand, within Pf1N1B4_386 at 455.440 kb on + strand, within Pf1N1B4_386 at 455.440 kb on + strand, within Pf1N1B4_386 at 455.441 kb on - strand at 455.441 kb on - strand, within Pf1N1B4_386 at 455.441 kb on - strand, within Pf1N1B4_386 at 455.441 kb on - strand, within Pf1N1B4_386
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 453,228 + -0.1 453,229 - +0.6 453,316 + +1.3 453,317 - +0.9 453,327 - -0.9 453,327 - +0.7 453,327 - -0.3 453,355 + +0.5 453,471 - -0.6 453,471 - +0.9 453,471 - -0.1 453,537 - +0.3 453,545 + +1.2 453,545 + +1.0 453,546 - -0.1 453,546 - -0.7 453,546 - +0.9 453,546 - -0.4 453,548 - -0.3 453,555 + +0.6 453,555 + +0.2 453,666 + Pf1N1B4_383 0.19 +0.9 453,666 + -1.1 453,666 + Pf1N1B4_383 0.19 +0.9 453,667 - Pf1N1B4_383 0.19 +2.2 453,667 - Pf1N1B4_383 0.19 +1.1 453,667 - Pf1N1B4_383 0.19 -0.7 453,667 - Pf1N1B4_383 0.19 -0.7 453,732 - Pf1N1B4_383 0.30 +1.0 453,735 - Pf1N1B4_383 0.30 +0.5 453,756 + Pf1N1B4_383 0.33 -0.4 453,756 + +2.2 453,756 + Pf1N1B4_383 0.33 -0.1 453,756 + Pf1N1B4_383 0.33 +0.1 453,757 - Pf1N1B4_383 0.34 -0.9 453,757 - Pf1N1B4_383 0.34 +0.8 453,757 - Pf1N1B4_383 0.34 -0.1 453,757 - Pf1N1B4_383 0.34 -0.6 453,870 + Pf1N1B4_383 0.52 -0.6 453,870 + Pf1N1B4_383 0.52 -0.3 453,870 + Pf1N1B4_383 0.52 +0.9 453,871 - Pf1N1B4_383 0.53 +0.9 453,871 - Pf1N1B4_383 0.53 +0.0 454,017 + +2.7 454,138 + +0.9 454,138 + +1.9 454,139 - +0.5 454,139 - +0.2 454,162 + -0.1 454,163 - +2.0 454,163 - -1.7 454,163 - -2.7 454,342 - Pf1N1B4_384 0.56 -1.7 454,351 + Pf1N1B4_384 0.60 +0.7 454,351 + Pf1N1B4_384 0.60 -1.7 454,352 - Pf1N1B4_384 0.60 -1.7 454,352 - Pf1N1B4_384 0.60 -0.9 454,516 + -0.1 454,613 - -0.5 454,819 - Pf1N1B4_385 0.44 -0.1 455,034 + -1.7 455,107 + +0.4 455,107 + +0.4 455,108 - +0.3 455,108 - +1.9 455,108 - -0.9 455,108 - -0.1 455,108 - -0.7 455,108 - +0.3 455,109 + +1.4 455,109 + -0.5 455,109 + +0.4 455,109 + +0.1 455,110 - -1.0 455,110 - +1.9 455,110 - +0.2 455,110 - -1.5 455,440 + Pf1N1B4_386 0.19 -1.1 455,440 + Pf1N1B4_386 0.19 +0.9 455,440 + Pf1N1B4_386 0.19 -0.1 455,440 + Pf1N1B4_386 0.19 +0.6 455,440 + Pf1N1B4_386 0.19 +0.6 455,440 + Pf1N1B4_386 0.19 -0.0 455,440 + Pf1N1B4_386 0.19 +0.9 455,441 - +0.4 455,441 - Pf1N1B4_386 0.19 -0.2 455,441 - Pf1N1B4_386 0.19 +1.4 455,441 - Pf1N1B4_386 0.19 -1.6
Or see this region's nucleotide sequence