Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3804

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3803 and Pf1N1B4_3804 are separated by 187 nucleotidesPf1N1B4_3804 and Pf1N1B4_3805 are separated by 126 nucleotidesPf1N1B4_3805 and Pf1N1B4_3806 are separated by 108 nucleotides Pf1N1B4_3803 - hypothetical protein, at 4,211,910 to 4,212,221 _3803 Pf1N1B4_3804 - Glycine-rich cell wall structural protein precursor, at 4,212,409 to 4,212,834 _3804 Pf1N1B4_3805 - hypothetical protein, at 4,212,961 to 4,213,131 _3805 Pf1N1B4_3806 - hypothetical protein, at 4,213,240 to 4,213,464 _3806 Position (kb) 4212 4213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4211.423 kb on + strandat 4211.447 kb on + strandat 4211.447 kb on + strandat 4211.448 kb on - strandat 4211.514 kb on + strandat 4211.514 kb on + strandat 4211.514 kb on + strandat 4211.514 kb on + strandat 4211.607 kb on + strandat 4211.608 kb on - strandat 4211.648 kb on + strandat 4211.648 kb on + strandat 4211.649 kb on - strandat 4211.649 kb on - strandat 4211.649 kb on - strandat 4211.652 kb on + strandat 4211.652 kb on + strandat 4211.653 kb on - strandat 4211.653 kb on - strandat 4211.653 kb on - strandat 4211.670 kb on + strandat 4211.722 kb on + strandat 4211.722 kb on + strandat 4211.734 kb on + strandat 4211.736 kb on + strandat 4211.737 kb on - strandat 4211.802 kb on + strandat 4211.802 kb on + strandat 4211.802 kb on + strandat 4211.927 kb on + strandat 4212.285 kb on + strandat 4212.285 kb on + strandat 4212.286 kb on - strandat 4212.286 kb on - strandat 4212.286 kb on - strandat 4212.286 kb on - strandat 4212.290 kb on + strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.291 kb on - strandat 4212.308 kb on + strandat 4212.308 kb on + strandat 4212.334 kb on + strandat 4212.335 kb on - strandat 4212.395 kb on + strandat 4212.396 kb on - strandat 4212.405 kb on + strandat 4212.405 kb on + strandat 4212.405 kb on + strandat 4212.405 kb on + strandat 4212.405 kb on + strandat 4212.406 kb on - strandat 4212.406 kb on - strandat 4212.406 kb on - strandat 4212.406 kb on - strandat 4212.438 kb on - strandat 4212.539 kb on + strand, within Pf1N1B4_3804at 4212.539 kb on + strandat 4212.678 kb on + strand, within Pf1N1B4_3804at 4212.678 kb on + strandat 4212.678 kb on + strandat 4212.810 kb on + strandat 4212.816 kb on + strandat 4212.817 kb on - strandat 4212.817 kb on - strandat 4212.820 kb on + strandat 4212.820 kb on + strandat 4212.821 kb on - strandat 4212.832 kb on + strandat 4212.833 kb on - strandat 4212.833 kb on - strandat 4212.930 kb on + strandat 4212.930 kb on + strandat 4212.930 kb on + strandat 4212.930 kb on + strandat 4212.931 kb on - strandat 4212.931 kb on - strandat 4212.931 kb on - strandat 4212.931 kb on - strandat 4212.931 kb on - strandat 4212.933 kb on + strandat 4212.933 kb on + strandat 4212.933 kb on + strandat 4212.933 kb on + strandat 4212.934 kb on - strandat 4212.934 kb on - strandat 4212.934 kb on - strandat 4212.934 kb on - strandat 4212.934 kb on - strandat 4212.934 kb on - strandat 4212.934 kb on - strandat 4213.099 kb on + strand, within Pf1N1B4_3805at 4213.100 kb on - strand, within Pf1N1B4_3805at 4213.100 kb on - strand, within Pf1N1B4_3805at 4213.445 kb on + strandat 4213.446 kb on - strandat 4213.446 kb on - strandat 4213.511 kb on + strandat 4213.540 kb on - strandat 4213.606 kb on + strandat 4213.606 kb on + strandat 4213.775 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,211,423 + +0.8
4,211,447 + +0.1
4,211,447 + +1.2
4,211,448 - +0.4
4,211,514 + +0.8
4,211,514 + -0.2
4,211,514 + +0.9
4,211,514 + -0.6
4,211,607 + -1.6
4,211,608 - +0.7
4,211,648 + +0.8
4,211,648 + +0.4
4,211,649 - +0.5
4,211,649 - +0.3
4,211,649 - +0.0
4,211,652 + -1.2
4,211,652 + +1.6
4,211,653 - +1.6
4,211,653 - +0.0
4,211,653 - -0.8
4,211,670 + -0.2
4,211,722 + +0.4
4,211,722 + +0.9
4,211,734 + -0.2
4,211,736 + -0.2
4,211,737 - +0.2
4,211,802 + -0.2
4,211,802 + -0.2
4,211,802 + +2.4
4,211,927 + -1.2
4,212,285 + +0.6
4,212,285 + +0.8
4,212,286 - -0.2
4,212,286 - -2.2
4,212,286 - +0.0
4,212,286 - +0.2
4,212,290 + +0.1
4,212,291 - +1.4
4,212,291 - +0.1
4,212,291 - -0.4
4,212,291 - +0.1
4,212,291 - -0.2
4,212,291 - +0.8
4,212,291 - -0.8
4,212,291 - +0.4
4,212,291 - -1.6
4,212,291 - -0.3
4,212,291 - +0.4
4,212,308 + +0.4
4,212,308 + +0.8
4,212,334 + +1.0
4,212,335 - -1.0
4,212,395 + +1.4
4,212,396 - +1.1
4,212,405 + -0.2
4,212,405 + +1.1
4,212,405 + +1.2
4,212,405 + -0.1
4,212,405 + +1.1
4,212,406 - -1.8
4,212,406 - +1.4
4,212,406 - -1.2
4,212,406 - +0.4
4,212,438 - +1.8
4,212,539 + Pf1N1B4_3804 0.31 +1.2
4,212,539 + -0.2
4,212,678 + Pf1N1B4_3804 0.63 +0.7
4,212,678 + -2.2
4,212,678 + +1.1
4,212,810 + +1.1
4,212,816 + -0.4
4,212,817 - -0.8
4,212,817 - +1.0
4,212,820 + +0.1
4,212,820 + +0.1
4,212,821 - -2.6
4,212,832 + -1.8
4,212,833 - -1.2
4,212,833 - +0.0
4,212,930 + -1.8
4,212,930 + -0.2
4,212,930 + -1.2
4,212,930 + +0.4
4,212,931 - -0.2
4,212,931 - -0.5
4,212,931 - +0.6
4,212,931 - -0.5
4,212,931 - +0.5
4,212,933 + +0.4
4,212,933 + -1.0
4,212,933 + -1.0
4,212,933 + +0.0
4,212,934 - +0.6
4,212,934 - -3.2
4,212,934 - -0.2
4,212,934 - -0.8
4,212,934 - -0.2
4,212,934 - -0.6
4,212,934 - +1.6
4,213,099 + Pf1N1B4_3805 0.81 +0.8
4,213,100 - Pf1N1B4_3805 0.81 +2.4
4,213,100 - Pf1N1B4_3805 0.81 +0.4
4,213,445 + -2.6
4,213,446 - +0.4
4,213,446 - -0.6
4,213,511 + -0.2
4,213,540 - -0.5
4,213,606 + +0.7
4,213,606 + -1.0
4,213,775 + +0.1

Or see this region's nucleotide sequence