Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_378

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_376 and Pf1N1B4_377 are separated by 211 nucleotidesPf1N1B4_377 and Pf1N1B4_378 are separated by 5 nucleotidesPf1N1B4_378 and Pf1N1B4_379 are separated by 153 nucleotidesPf1N1B4_379 and Pf1N1B4_380 are separated by 64 nucleotides Pf1N1B4_376 - Deblocking aminopeptidase (EC 3.4.11.-) @ Cyanophycinase 2 (EC 3.4.15.6), at 447,403 to 448,593 _376 Pf1N1B4_377 - FIG00953242: hypothetical protein, at 448,805 to 449,032 _377 Pf1N1B4_378 - Carbon storage regulator, at 449,038 to 449,223 _378 Pf1N1B4_379 - Protein of unknown function UPF0060, at 449,377 to 449,709 _379 Pf1N1B4_380 - Oxidoreductase, short chain dehydrogenase/reductase family, at 449,774 to 450,589 _380 Position (kb) 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 448.216 kb on + strand, within Pf1N1B4_376at 448.222 kb on + strand, within Pf1N1B4_376at 448.298 kb on - strand, within Pf1N1B4_376at 448.298 kb on - strand, within Pf1N1B4_376at 448.298 kb on - strand, within Pf1N1B4_376at 448.298 kb on - strand, within Pf1N1B4_376at 448.438 kb on + strand, within Pf1N1B4_376at 448.438 kb on + strand, within Pf1N1B4_376at 448.439 kb on - strand, within Pf1N1B4_376at 448.439 kb on - strand, within Pf1N1B4_376at 448.439 kb on - strand, within Pf1N1B4_376at 448.439 kb on - strand, within Pf1N1B4_376at 448.747 kb on - strandat 448.762 kb on - strandat 448.804 kb on + strandat 448.804 kb on + strandat 449.082 kb on - strand, within Pf1N1B4_378at 449.082 kb on - strand, within Pf1N1B4_378at 449.082 kb on - strand, within Pf1N1B4_378at 449.082 kb on - strand, within Pf1N1B4_378at 449.098 kb on + strand, within Pf1N1B4_378at 449.098 kb on + strand, within Pf1N1B4_378at 449.098 kb on + strand, within Pf1N1B4_378at 449.099 kb on - strand, within Pf1N1B4_378at 449.099 kb on - strand, within Pf1N1B4_378at 449.099 kb on - strand, within Pf1N1B4_378at 449.099 kb on - strand, within Pf1N1B4_378at 449.099 kb on - strand, within Pf1N1B4_378at 449.216 kb on - strandat 449.312 kb on - strandat 449.312 kb on - strandat 449.358 kb on + strandat 449.359 kb on - strandat 449.510 kb on + strand, within Pf1N1B4_379at 449.510 kb on + strand, within Pf1N1B4_379at 449.510 kb on + strand, within Pf1N1B4_379at 449.511 kb on - strand, within Pf1N1B4_379at 449.511 kb on - strand, within Pf1N1B4_379at 449.511 kb on - strand, within Pf1N1B4_379at 449.511 kb on - strand, within Pf1N1B4_379at 449.511 kb on - strand, within Pf1N1B4_379at 449.511 kb on - strand, within Pf1N1B4_379at 449.522 kb on + strand, within Pf1N1B4_379at 449.523 kb on - strand, within Pf1N1B4_379at 449.625 kb on + strandat 449.625 kb on + strand, within Pf1N1B4_379at 449.626 kb on - strand, within Pf1N1B4_379at 449.699 kb on + strandat 449.699 kb on + strandat 449.699 kb on + strandat 449.699 kb on + strandat 449.699 kb on + strandat 449.700 kb on - strandat 449.700 kb on - strandat 449.700 kb on - strandat 449.700 kb on - strandat 449.700 kb on - strandat 449.700 kb on - strandat 449.700 kb on - strandat 449.700 kb on - strandat 449.835 kb on + strandat 449.836 kb on - strandat 449.836 kb on - strandat 449.928 kb on + strand, within Pf1N1B4_380at 449.934 kb on + strand, within Pf1N1B4_380at 449.934 kb on + strand, within Pf1N1B4_380at 449.934 kb on + strand, within Pf1N1B4_380at 449.935 kb on - strand, within Pf1N1B4_380at 449.935 kb on - strand, within Pf1N1B4_380at 449.935 kb on - strandat 450.141 kb on + strand, within Pf1N1B4_380at 450.141 kb on + strand, within Pf1N1B4_380at 450.141 kb on + strand, within Pf1N1B4_380at 450.141 kb on + strand, within Pf1N1B4_380at 450.142 kb on - strand, within Pf1N1B4_380at 450.142 kb on - strand, within Pf1N1B4_380at 450.142 kb on - strandat 450.142 kb on - strand, within Pf1N1B4_380at 450.142 kb on - strand, within Pf1N1B4_380at 450.142 kb on - strand, within Pf1N1B4_380

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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448,216 + Pf1N1B4_376 0.68 -2.1
448,222 + Pf1N1B4_376 0.69 -1.7
448,298 - Pf1N1B4_376 0.75 +0.1
448,298 - Pf1N1B4_376 0.75 +1.0
448,298 - Pf1N1B4_376 0.75 -0.7
448,298 - Pf1N1B4_376 0.75 +0.9
448,438 + Pf1N1B4_376 0.87 -0.4
448,438 + Pf1N1B4_376 0.87 -0.7
448,439 - Pf1N1B4_376 0.87 +0.9
448,439 - Pf1N1B4_376 0.87 +0.6
448,439 - Pf1N1B4_376 0.87 -1.5
448,439 - Pf1N1B4_376 0.87 -1.1
448,747 - +0.3
448,762 - +1.1
448,804 + +1.7
448,804 + -1.7
449,082 - Pf1N1B4_378 0.24 -0.1
449,082 - Pf1N1B4_378 0.24 -1.1
449,082 - Pf1N1B4_378 0.24 +0.1
449,082 - Pf1N1B4_378 0.24 -2.3
449,098 + Pf1N1B4_378 0.32 -1.3
449,098 + Pf1N1B4_378 0.32 -1.1
449,098 + Pf1N1B4_378 0.32 +0.2
449,099 - Pf1N1B4_378 0.33 -1.7
449,099 - Pf1N1B4_378 0.33 -0.1
449,099 - Pf1N1B4_378 0.33 -0.0
449,099 - Pf1N1B4_378 0.33 +0.3
449,099 - Pf1N1B4_378 0.33 -1.4
449,216 - +1.1
449,312 - +0.6
449,312 - +0.3
449,358 + -0.4
449,359 - -1.5
449,510 + Pf1N1B4_379 0.40 -1.1
449,510 + Pf1N1B4_379 0.40 +1.9
449,510 + Pf1N1B4_379 0.40 -1.7
449,511 - Pf1N1B4_379 0.40 -3.6
449,511 - Pf1N1B4_379 0.40 -2.1
449,511 - Pf1N1B4_379 0.40 -0.6
449,511 - Pf1N1B4_379 0.40 -1.7
449,511 - Pf1N1B4_379 0.40 -1.9
449,511 - Pf1N1B4_379 0.40 -1.1
449,522 + Pf1N1B4_379 0.44 -0.9
449,523 - Pf1N1B4_379 0.44 +0.9
449,625 + -1.1
449,625 + Pf1N1B4_379 0.74 +0.9
449,626 - Pf1N1B4_379 0.75 -0.6
449,699 + -1.1
449,699 + -0.8
449,699 + -1.7
449,699 + -2.1
449,699 + -1.7
449,700 - -1.0
449,700 - -0.1
449,700 - +0.1
449,700 - -1.8
449,700 - -0.4
449,700 - +1.9
449,700 - +1.1
449,700 - -1.9
449,835 + +0.9
449,836 - +4.1
449,836 - +3.8
449,928 + Pf1N1B4_380 0.19 +0.5
449,934 + Pf1N1B4_380 0.20 +1.7
449,934 + Pf1N1B4_380 0.20 -0.7
449,934 + Pf1N1B4_380 0.20 +0.9
449,935 - Pf1N1B4_380 0.20 +0.3
449,935 - Pf1N1B4_380 0.20 +1.4
449,935 - -0.1
450,141 + Pf1N1B4_380 0.45 -2.1
450,141 + Pf1N1B4_380 0.45 -0.6
450,141 + Pf1N1B4_380 0.45 +1.2
450,141 + Pf1N1B4_380 0.45 -0.1
450,142 - Pf1N1B4_380 0.45 +0.6
450,142 - Pf1N1B4_380 0.45 +0.4
450,142 - -0.1
450,142 - Pf1N1B4_380 0.45 -0.1
450,142 - Pf1N1B4_380 0.45 -0.7
450,142 - Pf1N1B4_380 0.45 -0.7

Or see this region's nucleotide sequence