Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3702 and Pf1N1B4_3703 are separated by 165 nucleotides Pf1N1B4_3703 and Pf1N1B4_3704 are separated by 164 nucleotides
Pf1N1B4_3702 - NLP/P60 family protein, at 4,111,158 to 4,111,721
_3702
Pf1N1B4_3703 - NLP/P60 family protein, at 4,111,887 to 4,112,423
_3703
Pf1N1B4_3704 - L-sorbosone dehydrogenase, at 4,112,588 to 4,113,901
_3704
Position (kb)
4111
4112
4113 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4110.896 kb on - strand at 4110.976 kb on + strand at 4110.977 kb on - strand at 4111.000 kb on + strand at 4111.000 kb on + strand at 4111.000 kb on + strand at 4111.635 kb on + strand, within Pf1N1B4_3702 at 4111.719 kb on + strand at 4111.734 kb on + strand at 4111.746 kb on - strand at 4111.753 kb on + strand at 4111.915 kb on + strand at 4111.916 kb on - strand at 4112.280 kb on + strand, within Pf1N1B4_3703 at 4112.280 kb on + strand, within Pf1N1B4_3703 at 4112.280 kb on + strand, within Pf1N1B4_3703 at 4112.280 kb on + strand at 4112.280 kb on + strand, within Pf1N1B4_3703 at 4112.280 kb on + strand, within Pf1N1B4_3703 at 4112.281 kb on - strand, within Pf1N1B4_3703 at 4112.281 kb on - strand at 4112.281 kb on - strand, within Pf1N1B4_3703 at 4112.356 kb on - strand, within Pf1N1B4_3703 at 4112.356 kb on - strand, within Pf1N1B4_3703 at 4112.370 kb on + strand at 4112.414 kb on + strand at 4112.414 kb on + strand at 4112.414 kb on + strand at 4112.522 kb on + strand at 4112.589 kb on + strand at 4112.589 kb on + strand at 4112.590 kb on - strand at 4112.590 kb on - strand at 4112.776 kb on + strand at 4112.776 kb on + strand, within Pf1N1B4_3704 at 4112.776 kb on + strand, within Pf1N1B4_3704 at 4112.777 kb on - strand, within Pf1N1B4_3704 at 4112.777 kb on - strand, within Pf1N1B4_3704 at 4112.980 kb on - strand, within Pf1N1B4_3704 at 4112.980 kb on - strand, within Pf1N1B4_3704 at 4112.980 kb on - strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.982 kb on + strand, within Pf1N1B4_3704 at 4112.983 kb on - strand, within Pf1N1B4_3704 at 4112.983 kb on - strand, within Pf1N1B4_3704 at 4112.983 kb on - strand, within Pf1N1B4_3704 at 4112.983 kb on - strand, within Pf1N1B4_3704 at 4112.983 kb on - strand, within Pf1N1B4_3704 at 4112.983 kb on - strand, within Pf1N1B4_3704 at 4112.983 kb on - strand, within Pf1N1B4_3704 at 4112.983 kb on - strand, within Pf1N1B4_3704 at 4112.989 kb on - strand, within Pf1N1B4_3704 at 4113.030 kb on + strand at 4113.030 kb on + strand, within Pf1N1B4_3704 at 4113.031 kb on - strand, within Pf1N1B4_3704 at 4113.031 kb on - strand, within Pf1N1B4_3704 at 4113.031 kb on - strand, within Pf1N1B4_3704 at 4113.031 kb on - strand, within Pf1N1B4_3704 at 4113.249 kb on + strand, within Pf1N1B4_3704 at 4113.249 kb on + strand, within Pf1N1B4_3704 at 4113.249 kb on + strand, within Pf1N1B4_3704 at 4113.250 kb on - strand, within Pf1N1B4_3704 at 4113.250 kb on - strand, within Pf1N1B4_3704 at 4113.250 kb on - strand, within Pf1N1B4_3704 at 4113.250 kb on - strand at 4113.250 kb on - strand, within Pf1N1B4_3704 at 4113.250 kb on - strand, within Pf1N1B4_3704 at 4113.250 kb on - strand, within Pf1N1B4_3704 at 4113.250 kb on - strand, within Pf1N1B4_3704 at 4113.405 kb on + strand, within Pf1N1B4_3704 at 4113.405 kb on + strand, within Pf1N1B4_3704 at 4113.405 kb on + strand, within Pf1N1B4_3704 at 4113.405 kb on + strand at 4113.405 kb on + strand, within Pf1N1B4_3704 at 4113.405 kb on + strand, within Pf1N1B4_3704 at 4113.406 kb on - strand, within Pf1N1B4_3704 at 4113.406 kb on - strand at 4113.406 kb on - strand, within Pf1N1B4_3704 at 4113.406 kb on - strand, within Pf1N1B4_3704
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 4,110,896 - -1.4 4,110,976 + -1.2 4,110,977 - +0.0 4,111,000 + +0.3 4,111,000 + -1.8 4,111,000 + -1.0 4,111,635 + Pf1N1B4_3702 0.85 -1.0 4,111,719 + +1.4 4,111,734 + -0.2 4,111,746 - +1.6 4,111,753 + +1.4 4,111,915 + +0.8 4,111,916 - +1.4 4,112,280 + Pf1N1B4_3703 0.73 -0.2 4,112,280 + Pf1N1B4_3703 0.73 -0.2 4,112,280 + Pf1N1B4_3703 0.73 -1.2 4,112,280 + -1.2 4,112,280 + Pf1N1B4_3703 0.73 -2.0 4,112,280 + Pf1N1B4_3703 0.73 +0.5 4,112,281 - Pf1N1B4_3703 0.73 -2.5 4,112,281 - +0.8 4,112,281 - Pf1N1B4_3703 0.73 -0.2 4,112,356 - Pf1N1B4_3703 0.87 -1.2 4,112,356 - Pf1N1B4_3703 0.87 -0.8 4,112,370 + +0.1 4,112,414 + -0.2 4,112,414 + -0.5 4,112,414 + +1.4 4,112,522 + +0.4 4,112,589 + -0.2 4,112,589 + +0.5 4,112,590 - -0.2 4,112,590 - -0.2 4,112,776 + -0.8 4,112,776 + Pf1N1B4_3704 0.14 +1.4 4,112,776 + Pf1N1B4_3704 0.14 -0.2 4,112,777 - Pf1N1B4_3704 0.14 -2.2 4,112,777 - Pf1N1B4_3704 0.14 -0.1 4,112,980 - Pf1N1B4_3704 0.30 +0.5 4,112,980 - Pf1N1B4_3704 0.30 +1.8 4,112,980 - Pf1N1B4_3704 0.30 -0.2 4,112,982 + Pf1N1B4_3704 0.30 +0.1 4,112,982 + Pf1N1B4_3704 0.30 +0.5 4,112,982 + Pf1N1B4_3704 0.30 +1.0 4,112,982 + Pf1N1B4_3704 0.30 +2.4 4,112,982 + Pf1N1B4_3704 0.30 -1.2 4,112,982 + Pf1N1B4_3704 0.30 -2.5 4,112,982 + Pf1N1B4_3704 0.30 -0.5 4,112,982 + Pf1N1B4_3704 0.30 -2.5 4,112,982 + Pf1N1B4_3704 0.30 +0.2 4,112,983 - Pf1N1B4_3704 0.30 +1.0 4,112,983 - Pf1N1B4_3704 0.30 -0.9 4,112,983 - Pf1N1B4_3704 0.30 +0.0 4,112,983 - Pf1N1B4_3704 0.30 +1.0 4,112,983 - Pf1N1B4_3704 0.30 -1.2 4,112,983 - Pf1N1B4_3704 0.30 -0.2 4,112,983 - Pf1N1B4_3704 0.30 -1.1 4,112,983 - Pf1N1B4_3704 0.30 +0.3 4,112,989 - Pf1N1B4_3704 0.31 -0.2 4,113,030 + +1.8 4,113,030 + Pf1N1B4_3704 0.34 +0.8 4,113,031 - Pf1N1B4_3704 0.34 -0.7 4,113,031 - Pf1N1B4_3704 0.34 +0.8 4,113,031 - Pf1N1B4_3704 0.34 -0.7 4,113,031 - Pf1N1B4_3704 0.34 +0.9 4,113,249 + Pf1N1B4_3704 0.50 -0.2 4,113,249 + Pf1N1B4_3704 0.50 -1.8 4,113,249 + Pf1N1B4_3704 0.50 +2.1 4,113,250 - Pf1N1B4_3704 0.50 -0.1 4,113,250 - Pf1N1B4_3704 0.50 +0.4 4,113,250 - Pf1N1B4_3704 0.50 +0.2 4,113,250 - -0.2 4,113,250 - Pf1N1B4_3704 0.50 +0.6 4,113,250 - Pf1N1B4_3704 0.50 -0.5 4,113,250 - Pf1N1B4_3704 0.50 -1.6 4,113,250 - Pf1N1B4_3704 0.50 -1.8 4,113,405 + Pf1N1B4_3704 0.62 -0.8 4,113,405 + Pf1N1B4_3704 0.62 +2.4 4,113,405 + Pf1N1B4_3704 0.62 +0.5 4,113,405 + +0.8 4,113,405 + Pf1N1B4_3704 0.62 -0.8 4,113,405 + Pf1N1B4_3704 0.62 +2.1 4,113,406 - Pf1N1B4_3704 0.62 +0.8 4,113,406 - -0.2 4,113,406 - Pf1N1B4_3704 0.62 -2.5 4,113,406 - Pf1N1B4_3704 0.62 +0.5
Or see this region's nucleotide sequence