Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3559

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3557 and Pf1N1B4_3558 are separated by 740 nucleotidesPf1N1B4_3558 and Pf1N1B4_3559 are separated by 31 nucleotidesPf1N1B4_3559 and Pf1N1B4_3560 are separated by 222 nucleotidesPf1N1B4_3560 and Pf1N1B4_3561 overlap by 4 nucleotides Pf1N1B4_3557 - hypothetical protein, at 3,961,976 to 3,962,113 _3557 Pf1N1B4_3558 - Aromatic amino acid transport protein AroP, at 3,962,854 to 3,963,015 _3558 Pf1N1B4_3559 - Aromatic amino acid transport protein AroP, at 3,963,047 to 3,964,468 _3559 Pf1N1B4_3560 - Hypothetical protein YaeJ with similarity to translation release factor, at 3,964,691 to 3,965,104 _3560 Pf1N1B4_3561 - Xanthine transporter,putative, at 3,965,101 to 3,966,300 _3561 Position (kb) 3963 3964 3965Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3962.125 kb on + strandat 3962.125 kb on + strandat 3962.126 kb on - strandat 3962.126 kb on - strandat 3962.223 kb on + strandat 3962.224 kb on - strandat 3962.327 kb on + strandat 3962.340 kb on + strandat 3962.340 kb on + strandat 3962.340 kb on + strandat 3962.368 kb on - strandat 3962.404 kb on + strandat 3962.423 kb on - strandat 3962.431 kb on - strandat 3962.511 kb on + strandat 3962.512 kb on - strandat 3962.549 kb on + strandat 3962.550 kb on - strandat 3962.550 kb on - strandat 3962.613 kb on - strandat 3962.613 kb on - strandat 3962.613 kb on - strandat 3962.790 kb on + strandat 3962.791 kb on - strandat 3962.791 kb on - strandat 3962.791 kb on - strandat 3962.791 kb on - strandat 3962.807 kb on + strandat 3962.808 kb on - strandat 3962.808 kb on - strandat 3962.808 kb on - strandat 3962.808 kb on - strandat 3962.905 kb on - strand, within Pf1N1B4_3558at 3963.010 kb on + strandat 3963.103 kb on + strandat 3963.302 kb on + strand, within Pf1N1B4_3559at 3963.302 kb on + strand, within Pf1N1B4_3559at 3963.303 kb on - strand, within Pf1N1B4_3559at 3963.303 kb on - strand, within Pf1N1B4_3559at 3963.353 kb on + strand, within Pf1N1B4_3559at 3963.353 kb on + strand, within Pf1N1B4_3559at 3963.353 kb on + strand, within Pf1N1B4_3559at 3963.354 kb on - strand, within Pf1N1B4_3559at 3963.354 kb on - strandat 3963.354 kb on - strand, within Pf1N1B4_3559at 3963.395 kb on + strand, within Pf1N1B4_3559at 3963.395 kb on + strand, within Pf1N1B4_3559at 3963.395 kb on + strand, within Pf1N1B4_3559at 3963.395 kb on + strand, within Pf1N1B4_3559at 3963.395 kb on + strand, within Pf1N1B4_3559at 3963.395 kb on + strand, within Pf1N1B4_3559at 3963.396 kb on - strand, within Pf1N1B4_3559at 3963.396 kb on - strand, within Pf1N1B4_3559at 3963.396 kb on - strand, within Pf1N1B4_3559at 3963.396 kb on - strand, within Pf1N1B4_3559at 3963.396 kb on - strand, within Pf1N1B4_3559at 3963.396 kb on - strand, within Pf1N1B4_3559at 3963.404 kb on + strand, within Pf1N1B4_3559at 3963.563 kb on + strand, within Pf1N1B4_3559at 3963.563 kb on + strand, within Pf1N1B4_3559at 3963.564 kb on - strand, within Pf1N1B4_3559at 3963.564 kb on - strand, within Pf1N1B4_3559at 3963.872 kb on + strand, within Pf1N1B4_3559at 3963.872 kb on + strand, within Pf1N1B4_3559at 3963.873 kb on - strand, within Pf1N1B4_3559at 3963.873 kb on - strand, within Pf1N1B4_3559at 3963.971 kb on + strand, within Pf1N1B4_3559at 3963.972 kb on - strand, within Pf1N1B4_3559at 3963.986 kb on + strand, within Pf1N1B4_3559at 3963.986 kb on + strand, within Pf1N1B4_3559at 3963.986 kb on + strand, within Pf1N1B4_3559at 3963.987 kb on - strand, within Pf1N1B4_3559at 3963.987 kb on - strand, within Pf1N1B4_3559at 3963.987 kb on - strand, within Pf1N1B4_3559at 3964.000 kb on + strand, within Pf1N1B4_3559at 3964.127 kb on + strand, within Pf1N1B4_3559at 3964.127 kb on + strand, within Pf1N1B4_3559at 3964.127 kb on + strand, within Pf1N1B4_3559at 3964.127 kb on + strand, within Pf1N1B4_3559at 3964.128 kb on - strand, within Pf1N1B4_3559at 3964.128 kb on - strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.292 kb on + strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.293 kb on - strand, within Pf1N1B4_3559at 3964.364 kb on + strandat 3964.364 kb on + strandat 3964.364 kb on + strandat 3964.365 kb on - strandat 3964.466 kb on + strandat 3964.466 kb on + strandat 3964.466 kb on + strandat 3964.466 kb on + strandat 3964.467 kb on - strandat 3964.467 kb on - strandat 3964.467 kb on - strandat 3964.518 kb on + strandat 3964.519 kb on - strandat 3964.555 kb on - strandat 3964.649 kb on + strandat 3964.845 kb on - strand, within Pf1N1B4_3560at 3964.845 kb on - strand, within Pf1N1B4_3560at 3965.127 kb on - strandat 3965.144 kb on + strandat 3965.150 kb on + strandat 3965.150 kb on + strandat 3965.150 kb on + strandat 3965.151 kb on - strandat 3965.151 kb on - strandat 3965.151 kb on - strandat 3965.151 kb on - strandat 3965.151 kb on - strandat 3965.158 kb on + strandat 3965.158 kb on + strandat 3965.158 kb on + strandat 3965.158 kb on + strandat 3965.159 kb on - strandat 3965.159 kb on - strandat 3965.159 kb on - strandat 3965.161 kb on + strandat 3965.161 kb on + strandat 3965.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,962,125 + -2.9
3,962,125 + +0.9
3,962,126 - +0.6
3,962,126 - +0.9
3,962,223 + -0.1
3,962,224 - -1.1
3,962,327 + +1.3
3,962,340 + -1.7
3,962,340 + +1.5
3,962,340 + +0.6
3,962,368 - +0.5
3,962,404 + +0.9
3,962,423 - -0.5
3,962,431 - -0.7
3,962,511 + -1.5
3,962,512 - -0.5
3,962,549 + +0.5
3,962,550 - +0.9
3,962,550 - +2.5
3,962,613 - +0.6
3,962,613 - +0.0
3,962,613 - +0.5
3,962,790 + +0.9
3,962,791 - -0.9
3,962,791 - -0.4
3,962,791 - -0.5
3,962,791 - -0.1
3,962,807 + -0.7
3,962,808 - -1.1
3,962,808 - -2.7
3,962,808 - -1.4
3,962,808 - -1.1
3,962,905 - Pf1N1B4_3558 0.31 +0.9
3,963,010 + -1.7
3,963,103 + -0.8
3,963,302 + Pf1N1B4_3559 0.18 -0.1
3,963,302 + Pf1N1B4_3559 0.18 -1.3
3,963,303 - Pf1N1B4_3559 0.18 +0.1
3,963,303 - Pf1N1B4_3559 0.18 -1.0
3,963,353 + Pf1N1B4_3559 0.22 -0.6
3,963,353 + Pf1N1B4_3559 0.22 -1.0
3,963,353 + Pf1N1B4_3559 0.22 -1.0
3,963,354 - Pf1N1B4_3559 0.22 -1.4
3,963,354 - +0.9
3,963,354 - Pf1N1B4_3559 0.22 -1.3
3,963,395 + Pf1N1B4_3559 0.24 -0.1
3,963,395 + Pf1N1B4_3559 0.24 +0.9
3,963,395 + Pf1N1B4_3559 0.24 -2.4
3,963,395 + Pf1N1B4_3559 0.24 -1.1
3,963,395 + Pf1N1B4_3559 0.24 -1.0
3,963,395 + Pf1N1B4_3559 0.24 -0.9
3,963,396 - Pf1N1B4_3559 0.25 -0.1
3,963,396 - Pf1N1B4_3559 0.25 +0.3
3,963,396 - Pf1N1B4_3559 0.25 -2.1
3,963,396 - Pf1N1B4_3559 0.25 -0.1
3,963,396 - Pf1N1B4_3559 0.25 -1.1
3,963,396 - Pf1N1B4_3559 0.25 +2.2
3,963,404 + Pf1N1B4_3559 0.25 -1.3
3,963,563 + Pf1N1B4_3559 0.36 -0.6
3,963,563 + Pf1N1B4_3559 0.36 -1.5
3,963,564 - Pf1N1B4_3559 0.36 -0.9
3,963,564 - Pf1N1B4_3559 0.36 -1.7
3,963,872 + Pf1N1B4_3559 0.58 -0.7
3,963,872 + Pf1N1B4_3559 0.58 -0.7
3,963,873 - Pf1N1B4_3559 0.58 -1.1
3,963,873 - Pf1N1B4_3559 0.58 -2.1
3,963,971 + Pf1N1B4_3559 0.65 -1.1
3,963,972 - Pf1N1B4_3559 0.65 -0.1
3,963,986 + Pf1N1B4_3559 0.66 -1.7
3,963,986 + Pf1N1B4_3559 0.66 -1.8
3,963,986 + Pf1N1B4_3559 0.66 -1.4
3,963,987 - Pf1N1B4_3559 0.66 +0.8
3,963,987 - Pf1N1B4_3559 0.66 +0.9
3,963,987 - Pf1N1B4_3559 0.66 +0.3
3,964,000 + Pf1N1B4_3559 0.67 -1.1
3,964,127 + Pf1N1B4_3559 0.76 -0.5
3,964,127 + Pf1N1B4_3559 0.76 -0.7
3,964,127 + Pf1N1B4_3559 0.76 -0.4
3,964,127 + Pf1N1B4_3559 0.76 -1.7
3,964,128 - Pf1N1B4_3559 0.76 +0.9
3,964,128 - Pf1N1B4_3559 0.76 -0.5
3,964,292 + Pf1N1B4_3559 0.88 -1.5
3,964,292 + Pf1N1B4_3559 0.88 -0.7
3,964,292 + Pf1N1B4_3559 0.88 -0.5
3,964,292 + Pf1N1B4_3559 0.88 -0.8
3,964,292 + Pf1N1B4_3559 0.88 -1.7
3,964,292 + Pf1N1B4_3559 0.88 -2.9
3,964,292 + Pf1N1B4_3559 0.88 -1.1
3,964,292 + Pf1N1B4_3559 0.88 -1.0
3,964,292 + Pf1N1B4_3559 0.88 +0.9
3,964,292 + Pf1N1B4_3559 0.88 -0.7
3,964,292 + Pf1N1B4_3559 0.88 +0.9
3,964,292 + Pf1N1B4_3559 0.88 -0.8
3,964,292 + Pf1N1B4_3559 0.88 -2.3
3,964,292 + Pf1N1B4_3559 0.88 +0.1
3,964,292 + Pf1N1B4_3559 0.88 +0.5
3,964,292 + Pf1N1B4_3559 0.88 -0.6
3,964,293 - Pf1N1B4_3559 0.88 -0.1
3,964,293 - Pf1N1B4_3559 0.88 -1.7
3,964,293 - Pf1N1B4_3559 0.88 -0.8
3,964,293 - Pf1N1B4_3559 0.88 -0.1
3,964,293 - Pf1N1B4_3559 0.88 -0.9
3,964,293 - Pf1N1B4_3559 0.88 -1.1
3,964,293 - Pf1N1B4_3559 0.88 -1.1
3,964,293 - Pf1N1B4_3559 0.88 -0.8
3,964,293 - Pf1N1B4_3559 0.88 -0.1
3,964,293 - Pf1N1B4_3559 0.88 -0.5
3,964,293 - Pf1N1B4_3559 0.88 +1.9
3,964,293 - Pf1N1B4_3559 0.88 -0.7
3,964,293 - Pf1N1B4_3559 0.88 -0.7
3,964,293 - Pf1N1B4_3559 0.88 -0.9
3,964,293 - Pf1N1B4_3559 0.88 -2.4
3,964,293 - Pf1N1B4_3559 0.88 +0.7
3,964,293 - Pf1N1B4_3559 0.88 -0.9
3,964,293 - Pf1N1B4_3559 0.88 -1.7
3,964,293 - Pf1N1B4_3559 0.88 -0.5
3,964,364 + +0.6
3,964,364 + +0.1
3,964,364 + -2.4
3,964,365 - -1.1
3,964,466 + +0.5
3,964,466 + -0.1
3,964,466 + +0.7
3,964,466 + +0.9
3,964,467 - -1.1
3,964,467 - +1.0
3,964,467 - +0.5
3,964,518 + -0.1
3,964,519 - +0.4
3,964,555 - -1.1
3,964,649 + +0.9
3,964,845 - Pf1N1B4_3560 0.37 +0.3
3,964,845 - Pf1N1B4_3560 0.37 -0.9
3,965,127 - +1.5
3,965,144 + +0.1
3,965,150 + +0.1
3,965,150 + +1.5
3,965,150 + +0.1
3,965,151 - -1.1
3,965,151 - -0.5
3,965,151 - +1.9
3,965,151 - +1.5
3,965,151 - -0.1
3,965,158 + +0.9
3,965,158 + +0.6
3,965,158 + +1.3
3,965,158 + +0.1
3,965,159 - +0.5
3,965,159 - +1.5
3,965,159 - -1.7
3,965,161 + -0.4
3,965,161 + -0.1
3,965,162 - -1.1

Or see this region's nucleotide sequence