Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3434 and Pf1N1B4_3435 are separated by 27 nucleotides Pf1N1B4_3435 and Pf1N1B4_3436 are separated by 188 nucleotides Pf1N1B4_3436 and Pf1N1B4_3437 overlap by 24 nucleotides Pf1N1B4_3437 and Pf1N1B4_3438 are separated by 34 nucleotides
Pf1N1B4_3434 - Succinylglutamate desuccinylase/aspartoacylase, at 3,827,089 to 3,828,201
_3434
Pf1N1B4_3435 - ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) , at 3,828,229 to 3,828,993
_3435
Pf1N1B4_3436 - hypothetical protein, at 3,829,182 to 3,829,337
_3436
Pf1N1B4_3437 - Arginine pathway regulatory protein ArgR, repressor of arg regulon, at 3,829,314 to 3,830,219
_3437
Pf1N1B4_3438 - FIG00963434: hypothetical protein, at 3,830,254 to 3,835,287
_3438
Position (kb)
3829
3830 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3828.232 kb on + strand at 3828.232 kb on + strand at 3828.232 kb on + strand at 3828.232 kb on + strand at 3828.232 kb on + strand at 3828.232 kb on + strand at 3828.232 kb on + strand at 3828.258 kb on + strand at 3828.258 kb on + strand at 3828.265 kb on + strand at 3828.266 kb on - strand at 3828.357 kb on + strand, within Pf1N1B4_3435 at 3828.357 kb on + strand, within Pf1N1B4_3435 at 3828.358 kb on - strand, within Pf1N1B4_3435 at 3828.415 kb on - strand, within Pf1N1B4_3435 at 3828.625 kb on + strand, within Pf1N1B4_3435 at 3828.625 kb on + strand, within Pf1N1B4_3435 at 3828.991 kb on + strand at 3828.991 kb on + strand at 3828.992 kb on - strand at 3828.992 kb on - strand at 3829.280 kb on + strand, within Pf1N1B4_3436 at 3829.281 kb on - strand, within Pf1N1B4_3436 at 3829.281 kb on - strand, within Pf1N1B4_3436 at 3829.350 kb on + strand at 3829.351 kb on - strand at 3829.532 kb on - strand, within Pf1N1B4_3437 at 3829.558 kb on - strand, within Pf1N1B4_3437 at 3829.945 kb on + strand, within Pf1N1B4_3437 at 3829.980 kb on + strand, within Pf1N1B4_3437 at 3829.980 kb on + strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3830.005 kb on - strand, within Pf1N1B4_3437 at 3830.007 kb on + strand, within Pf1N1B4_3437 at 3830.007 kb on + strand, within Pf1N1B4_3437 at 3830.007 kb on + strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,828,232 + -0.6 3,828,232 + +0.9 3,828,232 + -1.6 3,828,232 + -0.6 3,828,232 + +0.7 3,828,232 + -0.4 3,828,232 + -0.1 3,828,258 + +1.5 3,828,258 + -0.2 3,828,265 + -1.1 3,828,266 - +1.4 3,828,357 + Pf1N1B4_3435 0.17 -0.4 3,828,357 + Pf1N1B4_3435 0.17 +0.7 3,828,358 - Pf1N1B4_3435 0.17 -1.1 3,828,415 - Pf1N1B4_3435 0.24 -2.4 3,828,625 + Pf1N1B4_3435 0.52 -0.3 3,828,625 + Pf1N1B4_3435 0.52 -0.1 3,828,991 + -2.4 3,828,991 + -1.3 3,828,992 - -0.1 3,828,992 - -0.5 3,829,280 + Pf1N1B4_3436 0.63 -3.2 3,829,281 - Pf1N1B4_3436 0.63 -0.3 3,829,281 - Pf1N1B4_3436 0.63 +0.9 3,829,350 + -0.5 3,829,351 - -1.1 3,829,532 - Pf1N1B4_3437 0.24 -0.4 3,829,558 - Pf1N1B4_3437 0.27 -0.1 3,829,945 + Pf1N1B4_3437 0.70 -0.3 3,829,980 + Pf1N1B4_3437 0.74 -0.6 3,829,980 + Pf1N1B4_3437 0.74 -1.6 3,829,981 - Pf1N1B4_3437 0.74 -0.5 3,829,981 - Pf1N1B4_3437 0.74 +0.1 3,829,981 - Pf1N1B4_3437 0.74 -1.1 3,829,981 - Pf1N1B4_3437 0.74 -2.4 3,829,981 - Pf1N1B4_3437 0.74 +0.2 3,830,005 - Pf1N1B4_3437 0.76 -0.8 3,830,007 + Pf1N1B4_3437 0.76 -2.6 3,830,007 + Pf1N1B4_3437 0.76 +1.5 3,830,007 + Pf1N1B4_3437 0.76 -0.4 3,830,008 - Pf1N1B4_3437 0.77 -1.3 3,830,008 - Pf1N1B4_3437 0.77 +0.2 3,830,008 - Pf1N1B4_3437 0.77 +0.7 3,830,008 - Pf1N1B4_3437 0.77 -1.6 3,830,008 - Pf1N1B4_3437 0.77 -0.1 3,830,008 - Pf1N1B4_3437 0.77 -2.4 3,830,008 - Pf1N1B4_3437 0.77 +0.4 3,830,008 - Pf1N1B4_3437 0.77 -1.9 3,830,008 - Pf1N1B4_3437 0.77 +0.4
Or see this region's nucleotide sequence