Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2764

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2764 and Pf1N1B4_2765 are separated by 42 nucleotidesPf1N1B4_2765 and Pf1N1B4_2766 are separated by 285 nucleotides Pf1N1B4_2764 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2), at 3,103,485 to 3,104,261 _2764 Pf1N1B4_2765 - Large-conductance mechanosensitive channel, at 3,104,304 to 3,104,717 _2765 Pf1N1B4_2766 - Catalase (EC 1.11.1.6), at 3,105,003 to 3,106,544 _2766 Position (kb) 3103 3104 3105Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3102.564 kb on + strandat 3102.564 kb on + strandat 3102.565 kb on - strandat 3102.565 kb on - strandat 3102.567 kb on - strandat 3102.567 kb on - strandat 3102.576 kb on + strandat 3102.669 kb on + strandat 3102.669 kb on + strandat 3102.669 kb on + strandat 3102.669 kb on + strandat 3102.669 kb on + strandat 3102.669 kb on + strandat 3102.670 kb on - strandat 3102.670 kb on - strandat 3102.752 kb on - strandat 3102.767 kb on - strandat 3102.767 kb on - strandat 3102.782 kb on + strandat 3103.026 kb on - strandat 3103.059 kb on + strandat 3103.060 kb on - strandat 3103.215 kb on + strandat 3103.216 kb on - strandat 3103.279 kb on + strandat 3103.279 kb on + strandat 3103.279 kb on + strandat 3103.279 kb on + strandat 3103.280 kb on - strandat 3103.280 kb on - strandat 3103.321 kb on + strandat 3103.321 kb on + strandat 3103.374 kb on + strandat 3103.374 kb on + strandat 3103.374 kb on + strandat 3103.374 kb on + strandat 3103.374 kb on + strandat 3103.375 kb on - strandat 3103.401 kb on + strandat 3103.401 kb on + strandat 3103.402 kb on - strandat 3103.433 kb on + strandat 3103.463 kb on + strandat 3103.463 kb on + strandat 3103.463 kb on + strandat 3103.557 kb on - strandat 3103.641 kb on - strand, within Pf1N1B4_2764at 3103.641 kb on - strand, within Pf1N1B4_2764at 3103.641 kb on - strand, within Pf1N1B4_2764at 3103.656 kb on + strand, within Pf1N1B4_2764at 3103.656 kb on + strand, within Pf1N1B4_2764at 3103.657 kb on - strand, within Pf1N1B4_2764at 3103.657 kb on - strand, within Pf1N1B4_2764at 3103.657 kb on - strand, within Pf1N1B4_2764at 3103.657 kb on - strand, within Pf1N1B4_2764at 3103.923 kb on + strand, within Pf1N1B4_2764at 3103.923 kb on + strand, within Pf1N1B4_2764at 3103.924 kb on - strand, within Pf1N1B4_2764at 3103.953 kb on + strand, within Pf1N1B4_2764at 3103.990 kb on - strand, within Pf1N1B4_2764at 3104.001 kb on + strand, within Pf1N1B4_2764at 3104.098 kb on + strand, within Pf1N1B4_2764at 3104.116 kb on + strand, within Pf1N1B4_2764at 3104.253 kb on + strandat 3104.253 kb on + strandat 3104.254 kb on - strandat 3104.254 kb on - strandat 3104.259 kb on + strandat 3104.366 kb on + strand, within Pf1N1B4_2765at 3104.366 kb on + strand, within Pf1N1B4_2765at 3104.367 kb on - strand, within Pf1N1B4_2765at 3104.367 kb on - strand, within Pf1N1B4_2765at 3104.489 kb on + strand, within Pf1N1B4_2765at 3104.490 kb on - strand, within Pf1N1B4_2765at 3104.490 kb on - strand, within Pf1N1B4_2765at 3104.490 kb on - strand, within Pf1N1B4_2765at 3104.490 kb on - strand, within Pf1N1B4_2765at 3104.494 kb on + strand, within Pf1N1B4_2765at 3104.495 kb on - strand, within Pf1N1B4_2765at 3104.506 kb on - strand, within Pf1N1B4_2765at 3104.583 kb on + strand, within Pf1N1B4_2765at 3104.583 kb on + strand, within Pf1N1B4_2765at 3104.583 kb on + strand, within Pf1N1B4_2765at 3104.583 kb on + strand, within Pf1N1B4_2765at 3104.583 kb on + strand, within Pf1N1B4_2765at 3104.584 kb on - strand, within Pf1N1B4_2765at 3104.584 kb on - strand, within Pf1N1B4_2765at 3104.584 kb on - strand, within Pf1N1B4_2765at 3104.584 kb on - strand, within Pf1N1B4_2765at 3104.584 kb on - strand, within Pf1N1B4_2765at 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.676 kb on - strandat 3104.706 kb on + strandat 3104.706 kb on + strandat 3104.706 kb on + strandat 3104.707 kb on - strandat 3104.707 kb on - strandat 3104.707 kb on - strandat 3104.707 kb on - strandat 3104.707 kb on - strandat 3104.707 kb on - strandat 3104.707 kb on - strandat 3104.717 kb on + strandat 3104.717 kb on + strandat 3104.718 kb on - strandat 3104.718 kb on - strandat 3104.718 kb on - strandat 3104.718 kb on - strandat 3104.718 kb on - strandat 3104.718 kb on - strandat 3104.718 kb on - strandat 3104.718 kb on - strandat 3104.722 kb on + strandat 3104.723 kb on - strandat 3104.723 kb on - strandat 3104.723 kb on - strandat 3104.733 kb on + strandat 3104.734 kb on - strandat 3104.759 kb on + strandat 3104.759 kb on + strandat 3104.760 kb on - strandat 3104.760 kb on - strandat 3104.812 kb on - strandat 3104.834 kb on - strandat 3104.834 kb on - strandat 3104.874 kb on + strandat 3104.875 kb on - strandat 3104.924 kb on + strandat 3104.925 kb on - strandat 3104.925 kb on - strandat 3104.925 kb on - strandat 3104.925 kb on - strandat 3104.925 kb on - strandat 3104.925 kb on - strandat 3104.928 kb on + strandat 3104.928 kb on + strandat 3104.928 kb on + strandat 3104.928 kb on + strandat 3104.929 kb on - strandat 3104.929 kb on - strandat 3104.929 kb on - strandat 3104.929 kb on - strandat 3104.929 kb on - strandat 3104.950 kb on + strandat 3104.983 kb on + strandat 3104.983 kb on + strandat 3104.984 kb on - strandat 3104.984 kb on - strandat 3104.984 kb on - strandat 3104.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,102,564 + +1.2
3,102,564 + +0.2
3,102,565 - -0.4
3,102,565 - -0.8
3,102,567 - -0.8
3,102,567 - -0.2
3,102,576 + +0.2
3,102,669 + +2.0
3,102,669 + -0.8
3,102,669 + -0.8
3,102,669 + +0.5
3,102,669 + -0.8
3,102,669 + +0.0
3,102,670 - -1.4
3,102,670 - +0.2
3,102,752 - +0.6
3,102,767 - -0.4
3,102,767 - +1.2
3,102,782 + +0.2
3,103,026 - -1.4
3,103,059 + -0.7
3,103,060 - -0.5
3,103,215 + -1.4
3,103,216 - +1.6
3,103,279 + +0.6
3,103,279 + -0.8
3,103,279 + -0.4
3,103,279 + +0.9
3,103,280 - +1.8
3,103,280 - +0.8
3,103,321 + -0.0
3,103,321 + +0.2
3,103,374 + -1.0
3,103,374 + -0.6
3,103,374 + -0.8
3,103,374 + -1.4
3,103,374 + +0.2
3,103,375 - +1.4
3,103,401 + -0.2
3,103,401 + +0.6
3,103,402 - +1.8
3,103,433 + -1.6
3,103,463 + -1.1
3,103,463 + -0.3
3,103,463 + +0.4
3,103,557 - -1.4
3,103,641 - Pf1N1B4_2764 0.20 -2.5
3,103,641 - Pf1N1B4_2764 0.20 -0.1
3,103,641 - Pf1N1B4_2764 0.20 +0.2
3,103,656 + Pf1N1B4_2764 0.22 -2.4
3,103,656 + Pf1N1B4_2764 0.22 -2.4
3,103,657 - Pf1N1B4_2764 0.22 -3.7
3,103,657 - Pf1N1B4_2764 0.22 -0.1
3,103,657 - Pf1N1B4_2764 0.22 -2.8
3,103,657 - Pf1N1B4_2764 0.22 -2.6
3,103,923 + Pf1N1B4_2764 0.56 -2.4
3,103,923 + Pf1N1B4_2764 0.56 -0.4
3,103,924 - Pf1N1B4_2764 0.56 -2.8
3,103,953 + Pf1N1B4_2764 0.60 -3.1
3,103,990 - Pf1N1B4_2764 0.65 -1.4
3,104,001 + Pf1N1B4_2764 0.66 -1.8
3,104,098 + Pf1N1B4_2764 0.79 +0.2
3,104,116 + Pf1N1B4_2764 0.81 +0.2
3,104,253 + -0.8
3,104,253 + -0.8
3,104,254 - -1.4
3,104,254 - -0.8
3,104,259 + +0.5
3,104,366 + Pf1N1B4_2765 0.15 -1.1
3,104,366 + Pf1N1B4_2765 0.15 -0.2
3,104,367 - Pf1N1B4_2765 0.15 -0.8
3,104,367 - Pf1N1B4_2765 0.15 -0.8
3,104,489 + Pf1N1B4_2765 0.45 +1.8
3,104,490 - Pf1N1B4_2765 0.45 +1.2
3,104,490 - Pf1N1B4_2765 0.45 -0.4
3,104,490 - Pf1N1B4_2765 0.45 -0.4
3,104,490 - Pf1N1B4_2765 0.45 +1.2
3,104,494 + Pf1N1B4_2765 0.46 +0.2
3,104,495 - Pf1N1B4_2765 0.46 +1.5
3,104,506 - Pf1N1B4_2765 0.49 -1.1
3,104,583 + Pf1N1B4_2765 0.67 +0.9
3,104,583 + Pf1N1B4_2765 0.67 +0.2
3,104,583 + Pf1N1B4_2765 0.67 +0.9
3,104,583 + Pf1N1B4_2765 0.67 -0.8
3,104,583 + Pf1N1B4_2765 0.67 -1.4
3,104,584 - Pf1N1B4_2765 0.68 -0.8
3,104,584 - Pf1N1B4_2765 0.68 +0.2
3,104,584 - Pf1N1B4_2765 0.68 -0.8
3,104,584 - Pf1N1B4_2765 0.68 -0.2
3,104,584 - Pf1N1B4_2765 0.68 -0.0
3,104,676 - +0.2
3,104,676 - -0.4
3,104,676 - -1.4
3,104,676 - +0.7
3,104,676 - -0.1
3,104,676 - +1.2
3,104,676 - +0.2
3,104,676 - +0.7
3,104,676 - +0.2
3,104,676 - -0.1
3,104,676 - +0.8
3,104,706 + -1.6
3,104,706 + +0.5
3,104,706 + +1.2
3,104,707 - +0.8
3,104,707 - +0.8
3,104,707 - +0.2
3,104,707 - +0.8
3,104,707 - -0.4
3,104,707 - +0.8
3,104,707 - +0.2
3,104,717 + +1.2
3,104,717 + -0.8
3,104,718 - -0.6
3,104,718 - +0.6
3,104,718 - -1.4
3,104,718 - +1.8
3,104,718 - -0.6
3,104,718 - +3.0
3,104,718 - -0.4
3,104,718 - -0.8
3,104,722 + +0.2
3,104,723 - +1.2
3,104,723 - +0.2
3,104,723 - -0.1
3,104,733 + -1.4
3,104,734 - +0.5
3,104,759 + +0.9
3,104,759 + -0.4
3,104,760 - +0.7
3,104,760 - +1.2
3,104,812 - +1.5
3,104,834 - +0.9
3,104,834 - -1.8
3,104,874 + -1.4
3,104,875 - -0.6
3,104,924 + +1.7
3,104,925 - +0.3
3,104,925 - -0.3
3,104,925 - +2.0
3,104,925 - +0.2
3,104,925 - +0.8
3,104,925 - +0.2
3,104,928 + +2.0
3,104,928 + +1.2
3,104,928 + +0.6
3,104,928 + -0.6
3,104,929 - +2.2
3,104,929 - +1.0
3,104,929 - +0.6
3,104,929 - +1.2
3,104,929 - -0.8
3,104,950 + +0.8
3,104,983 + -0.8
3,104,983 + -3.0
3,104,984 - +2.2
3,104,984 - -1.4
3,104,984 - -1.8
3,104,984 - -0.2

Or see this region's nucleotide sequence