Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2732 and Pf1N1B4_2733 are separated by 22 nucleotides Pf1N1B4_2733 and Pf1N1B4_2734 are separated by 119 nucleotides Pf1N1B4_2734 and Pf1N1B4_2735 are separated by 163 nucleotides
Pf1N1B4_2732 - FIG00954572: hypothetical protein, at 3,071,424 to 3,071,903
_2732
Pf1N1B4_2733 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 3,071,926 to 3,072,537
_2733
Pf1N1B4_2734 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 3,072,657 to 3,073,112
_2734
Pf1N1B4_2735 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,073,276 to 3,074,202
_2735
Position (kb)
3072
3073
3074 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3071.790 kb on - strand, within Pf1N1B4_2732 at 3071.936 kb on + strand at 3071.936 kb on + strand at 3071.936 kb on + strand at 3071.937 kb on - strand at 3072.081 kb on + strand, within Pf1N1B4_2733 at 3072.082 kb on - strand at 3072.082 kb on - strand, within Pf1N1B4_2733 at 3072.082 kb on - strand, within Pf1N1B4_2733 at 3072.223 kb on + strand, within Pf1N1B4_2733 at 3072.224 kb on - strand, within Pf1N1B4_2733 at 3072.546 kb on + strand at 3072.546 kb on + strand at 3072.547 kb on - strand at 3072.665 kb on + strand at 3072.665 kb on + strand at 3072.666 kb on - strand at 3072.666 kb on - strand at 3072.875 kb on - strand, within Pf1N1B4_2734 at 3073.055 kb on - strand, within Pf1N1B4_2734 at 3073.055 kb on - strand, within Pf1N1B4_2734 at 3073.102 kb on + strand at 3073.102 kb on + strand at 3073.102 kb on + strand at 3073.103 kb on - strand at 3073.103 kb on - strand at 3073.155 kb on + strand at 3073.155 kb on + strand at 3073.155 kb on + strand at 3073.156 kb on - strand at 3073.158 kb on - strand at 3073.186 kb on + strand at 3073.195 kb on + strand at 3073.195 kb on + strand at 3073.197 kb on + strand at 3073.197 kb on + strand at 3073.216 kb on - strand at 3073.216 kb on - strand at 3073.237 kb on + strand at 3073.237 kb on + strand at 3073.238 kb on - strand at 3073.242 kb on + strand at 3073.242 kb on + strand at 3073.242 kb on + strand at 3073.242 kb on + strand at 3073.242 kb on + strand at 3073.243 kb on - strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.435 kb on + strand, within Pf1N1B4_2735 at 3073.608 kb on + strand, within Pf1N1B4_2735 at 3073.609 kb on - strand, within Pf1N1B4_2735 at 3073.641 kb on + strand, within Pf1N1B4_2735 at 3073.645 kb on - strand, within Pf1N1B4_2735 at 3073.931 kb on - strand, within Pf1N1B4_2735 at 3073.931 kb on - strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.970 kb on - strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3074.014 kb on + strand, within Pf1N1B4_2735 at 3074.014 kb on + strand, within Pf1N1B4_2735 at 3074.015 kb on - strand, within Pf1N1B4_2735 at 3074.015 kb on - strand, within Pf1N1B4_2735 at 3074.021 kb on - strand, within Pf1N1B4_2735 at 3074.021 kb on - strand, within Pf1N1B4_2735 at 3074.080 kb on - strand, within Pf1N1B4_2735
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,071,790 - Pf1N1B4_2732 0.76 -0.3 3,071,936 + -0.2 3,071,936 + +1.0 3,071,936 + +0.2 3,071,937 - -0.2 3,072,081 + Pf1N1B4_2733 0.25 +0.5 3,072,082 - +0.6 3,072,082 - Pf1N1B4_2733 0.25 -0.8 3,072,082 - Pf1N1B4_2733 0.25 +0.2 3,072,223 + Pf1N1B4_2733 0.49 +1.0 3,072,224 - Pf1N1B4_2733 0.49 -0.4 3,072,546 + -0.0 3,072,546 + +0.3 3,072,547 - +1.4 3,072,665 + +0.2 3,072,665 + -0.5 3,072,666 - +0.2 3,072,666 - -0.6 3,072,875 - Pf1N1B4_2734 0.48 -1.5 3,073,055 - Pf1N1B4_2734 0.87 -1.4 3,073,055 - Pf1N1B4_2734 0.87 -0.8 3,073,102 + -1.2 3,073,102 + +0.2 3,073,102 + +0.8 3,073,103 - +0.5 3,073,103 - +0.1 3,073,155 + -0.2 3,073,155 + +1.0 3,073,155 + -0.4 3,073,156 - -0.3 3,073,158 - +1.2 3,073,186 + +0.6 3,073,195 + +2.5 3,073,195 + -0.8 3,073,197 + +1.2 3,073,197 + +2.0 3,073,216 - +0.2 3,073,216 - -1.6 3,073,237 + -1.4 3,073,237 + +1.1 3,073,238 - +0.2 3,073,242 + +1.2 3,073,242 + -0.4 3,073,242 + +0.7 3,073,242 + +0.2 3,073,242 + -1.2 3,073,243 - -1.0 3,073,330 + -0.4 3,073,330 + -1.0 3,073,330 + +1.2 3,073,330 + -2.1 3,073,330 + -0.8 3,073,331 - -0.4 3,073,331 - +0.2 3,073,331 - +1.0 3,073,331 - -0.3 3,073,351 + -1.2 3,073,351 + -2.1 3,073,351 + +0.6 3,073,351 + -2.1 3,073,351 + +1.1 3,073,351 + -1.1 3,073,435 + Pf1N1B4_2735 0.17 -0.1 3,073,608 + Pf1N1B4_2735 0.36 +0.6 3,073,609 - Pf1N1B4_2735 0.36 -0.0 3,073,641 + Pf1N1B4_2735 0.39 -1.1 3,073,645 - Pf1N1B4_2735 0.40 +2.5 3,073,931 - Pf1N1B4_2735 0.71 +0.6 3,073,931 - Pf1N1B4_2735 0.71 +0.2 3,073,969 + Pf1N1B4_2735 0.75 +0.4 3,073,969 + Pf1N1B4_2735 0.75 +0.7 3,073,969 + Pf1N1B4_2735 0.75 -1.0 3,073,969 + Pf1N1B4_2735 0.75 +1.6 3,073,970 - Pf1N1B4_2735 0.75 -0.8 3,073,975 + Pf1N1B4_2735 0.75 +0.2 3,073,975 + Pf1N1B4_2735 0.75 -0.5 3,073,975 + Pf1N1B4_2735 0.75 +1.4 3,073,975 + Pf1N1B4_2735 0.75 +2.2 3,073,975 + Pf1N1B4_2735 0.75 -0.5 3,073,976 - Pf1N1B4_2735 0.76 -0.7 3,073,976 - Pf1N1B4_2735 0.76 -0.7 3,073,976 - Pf1N1B4_2735 0.76 +0.6 3,073,976 - Pf1N1B4_2735 0.76 +0.3 3,073,976 - Pf1N1B4_2735 0.76 +0.2 3,073,976 - Pf1N1B4_2735 0.76 -0.3 3,073,976 - Pf1N1B4_2735 0.76 -0.8 3,073,976 - Pf1N1B4_2735 0.76 -1.4 3,073,976 - Pf1N1B4_2735 0.76 -0.1 3,073,976 - Pf1N1B4_2735 0.76 +1.2 3,073,976 - Pf1N1B4_2735 0.76 -0.4 3,074,014 + Pf1N1B4_2735 0.80 +1.2 3,074,014 + Pf1N1B4_2735 0.80 +0.2 3,074,015 - Pf1N1B4_2735 0.80 -0.1 3,074,015 - Pf1N1B4_2735 0.80 +0.7 3,074,021 - Pf1N1B4_2735 0.80 -0.5 3,074,021 - Pf1N1B4_2735 0.80 -1.3 3,074,080 - Pf1N1B4_2735 0.87 -0.8
Or see this region's nucleotide sequence