Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2560

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2559 and Pf1N1B4_2560 are separated by 13 nucleotidesPf1N1B4_2560 and Pf1N1B4_2561 are separated by 38 nucleotidesPf1N1B4_2561 and Pf1N1B4_2562 are separated by 74 nucleotides Pf1N1B4_2559 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 2,900,891 to 2,901,925 _2559 Pf1N1B4_2560 - hypothetical protein, at 2,901,939 to 2,902,055 _2560 Pf1N1B4_2561 - probable iron binding protein from the HesB_IscA_SufA family, at 2,902,094 to 2,902,444 _2561 Pf1N1B4_2562 - Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-), at 2,902,519 to 2,903,610 _2562 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -3 -2 -1 0 1at 2902.001 kb on + strand, within Pf1N1B4_2560at 2902.002 kb on - strandat 2902.002 kb on - strand, within Pf1N1B4_2560at 2902.003 kb on + strand, within Pf1N1B4_2560at 2902.003 kb on + strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.004 kb on - strand, within Pf1N1B4_2560at 2902.008 kb on + strand, within Pf1N1B4_2560at 2902.009 kb on - strand, within Pf1N1B4_2560at 2902.014 kb on + strand, within Pf1N1B4_2560at 2902.063 kb on + strandat 2902.459 kb on + strandat 2902.459 kb on + strandat 2902.459 kb on + strandat 2902.459 kb on + strandat 2902.460 kb on - strandat 2902.460 kb on - strandat 2902.460 kb on - strandat 2902.460 kb on - strandat 2902.460 kb on - strandat 2902.460 kb on - strandat 2902.462 kb on + strandat 2902.463 kb on - strandat 2902.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,902,001 + Pf1N1B4_2560 0.53 -2.8
2,902,002 - +0.3
2,902,002 - Pf1N1B4_2560 0.54 -2.3
2,902,003 + Pf1N1B4_2560 0.55 -0.2
2,902,003 + Pf1N1B4_2560 0.55 -1.4
2,902,004 - Pf1N1B4_2560 0.56 -1.3
2,902,004 - Pf1N1B4_2560 0.56 +0.8
2,902,004 - Pf1N1B4_2560 0.56 +0.1
2,902,004 - Pf1N1B4_2560 0.56 -0.7
2,902,004 - Pf1N1B4_2560 0.56 +1.1
2,902,004 - Pf1N1B4_2560 0.56 -2.3
2,902,004 - Pf1N1B4_2560 0.56 -1.1
2,902,004 - Pf1N1B4_2560 0.56 -2.5
2,902,004 - Pf1N1B4_2560 0.56 -2.4
2,902,004 - Pf1N1B4_2560 0.56 -1.7
2,902,004 - Pf1N1B4_2560 0.56 -2.1
2,902,004 - Pf1N1B4_2560 0.56 -0.7
2,902,008 + Pf1N1B4_2560 0.59 +0.3
2,902,009 - Pf1N1B4_2560 0.60 -0.3
2,902,014 + Pf1N1B4_2560 0.64 -0.0
2,902,063 + +0.8
2,902,459 + -1.9
2,902,459 + -2.3
2,902,459 + -1.7
2,902,459 + -0.5
2,902,460 - +0.3
2,902,460 - -0.7
2,902,460 - -1.3
2,902,460 - -2.1
2,902,460 - +0.3
2,902,460 - -0.7
2,902,462 + -3.2
2,902,463 - +0.3
2,902,463 - -1.3

Or see this region's nucleotide sequence