Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2552

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2550 and Pf1N1B4_2551 are separated by 24 nucleotidesPf1N1B4_2551 and Pf1N1B4_2552 are separated by 249 nucleotidesPf1N1B4_2552 and Pf1N1B4_2553 are separated by 173 nucleotides Pf1N1B4_2550 - Lipoate-protein ligase A, at 2,893,954 to 2,894,655 _2550 Pf1N1B4_2551 - Vfr transcriptional regulator / Cyclic AMP receptor protein, at 2,894,680 to 2,895,324 _2551 Pf1N1B4_2552 - OsmC/Ohr family protein, at 2,895,574 to 2,895,996 _2552 Pf1N1B4_2553 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 2,896,170 to 2,896,817 _2553 Position (kb) 2895 2896Strain fitness (log2 ratio) -2 -1 0 1 2at 2894.653 kb on + strandat 2894.653 kb on + strandat 2894.653 kb on + strandat 2894.653 kb on + strandat 2894.654 kb on - strandat 2894.654 kb on - strandat 2894.856 kb on + strand, within Pf1N1B4_2551at 2894.856 kb on + strand, within Pf1N1B4_2551at 2894.856 kb on + strand, within Pf1N1B4_2551at 2894.856 kb on + strandat 2894.857 kb on - strand, within Pf1N1B4_2551at 2894.857 kb on - strand, within Pf1N1B4_2551at 2894.857 kb on - strand, within Pf1N1B4_2551at 2894.931 kb on + strand, within Pf1N1B4_2551at 2894.932 kb on - strand, within Pf1N1B4_2551at 2894.966 kb on - strand, within Pf1N1B4_2551at 2894.969 kb on + strand, within Pf1N1B4_2551at 2894.969 kb on + strand, within Pf1N1B4_2551at 2894.970 kb on - strand, within Pf1N1B4_2551at 2894.970 kb on - strand, within Pf1N1B4_2551at 2894.970 kb on - strand, within Pf1N1B4_2551at 2894.970 kb on - strand, within Pf1N1B4_2551at 2895.251 kb on + strand, within Pf1N1B4_2551at 2895.315 kb on + strandat 2895.315 kb on + strandat 2895.315 kb on + strandat 2895.315 kb on + strandat 2895.316 kb on - strandat 2895.316 kb on - strandat 2895.316 kb on - strandat 2895.331 kb on - strandat 2895.351 kb on + strandat 2895.351 kb on + strandat 2895.351 kb on + strandat 2895.351 kb on + strandat 2895.351 kb on + strandat 2895.352 kb on - strandat 2895.352 kb on - strandat 2895.352 kb on - strandat 2895.352 kb on - strandat 2895.352 kb on - strandat 2895.352 kb on - strandat 2895.352 kb on - strandat 2895.395 kb on + strandat 2895.395 kb on + strandat 2895.395 kb on + strandat 2895.395 kb on + strandat 2895.440 kb on + strandat 2895.491 kb on + strandat 2895.491 kb on + strandat 2895.491 kb on + strandat 2895.491 kb on + strandat 2895.491 kb on + strandat 2895.492 kb on - strandat 2895.492 kb on - strandat 2895.492 kb on - strandat 2895.492 kb on - strandat 2895.498 kb on + strandat 2895.498 kb on + strandat 2895.499 kb on - strandat 2895.499 kb on - strandat 2895.535 kb on + strandat 2895.536 kb on - strandat 2895.919 kb on + strand, within Pf1N1B4_2552at 2895.919 kb on + strand, within Pf1N1B4_2552at 2895.919 kb on + strand, within Pf1N1B4_2552at 2895.920 kb on - strand, within Pf1N1B4_2552at 2895.920 kb on - strand, within Pf1N1B4_2552at 2895.920 kb on - strand, within Pf1N1B4_2552at 2895.920 kb on - strand, within Pf1N1B4_2552at 2895.920 kb on - strand, within Pf1N1B4_2552at 2895.920 kb on - strand, within Pf1N1B4_2552at 2895.920 kb on - strand, within Pf1N1B4_2552at 2895.973 kb on + strandat 2896.051 kb on + strandat 2896.051 kb on + strandat 2896.051 kb on + strandat 2896.052 kb on - strandat 2896.052 kb on - strandat 2896.065 kb on - strandat 2896.079 kb on + strandat 2896.079 kb on + strandat 2896.079 kb on + strandat 2896.079 kb on + strandat 2896.080 kb on - strandat 2896.102 kb on - strandat 2896.102 kb on - strandat 2896.171 kb on + strandat 2896.171 kb on + strandat 2896.172 kb on - strandat 2896.172 kb on - strandat 2896.851 kb on + strandat 2896.852 kb on - strandat 2896.852 kb on - strandat 2896.955 kb on + strandat 2896.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,894,653 + -0.6
2,894,653 + -0.7
2,894,653 + -0.1
2,894,653 + -1.5
2,894,654 - -1.6
2,894,654 - -2.5
2,894,856 + Pf1N1B4_2551 0.27 -0.2
2,894,856 + Pf1N1B4_2551 0.27 +2.1
2,894,856 + Pf1N1B4_2551 0.27 +0.3
2,894,856 + -0.7
2,894,857 - Pf1N1B4_2551 0.27 +0.3
2,894,857 - Pf1N1B4_2551 0.27 -0.1
2,894,857 - Pf1N1B4_2551 0.27 -1.0
2,894,931 + Pf1N1B4_2551 0.39 +0.3
2,894,932 - Pf1N1B4_2551 0.39 +2.6
2,894,966 - Pf1N1B4_2551 0.44 -0.6
2,894,969 + Pf1N1B4_2551 0.45 -0.6
2,894,969 + Pf1N1B4_2551 0.45 +0.3
2,894,970 - Pf1N1B4_2551 0.45 -1.7
2,894,970 - Pf1N1B4_2551 0.45 -1.1
2,894,970 - Pf1N1B4_2551 0.45 +1.3
2,894,970 - Pf1N1B4_2551 0.45 -1.3
2,895,251 + Pf1N1B4_2551 0.89 +0.0
2,895,315 + +0.3
2,895,315 + +0.4
2,895,315 + -0.5
2,895,315 + +1.3
2,895,316 - -0.3
2,895,316 - -0.5
2,895,316 - +0.1
2,895,331 - -0.3
2,895,351 + +0.3
2,895,351 + +0.3
2,895,351 + -1.7
2,895,351 + -1.1
2,895,351 + +0.7
2,895,352 - -1.1
2,895,352 - -0.7
2,895,352 - +0.9
2,895,352 - +1.4
2,895,352 - -1.3
2,895,352 - +0.3
2,895,352 - -0.5
2,895,395 + -0.7
2,895,395 + -0.7
2,895,395 + +0.9
2,895,395 + +0.3
2,895,440 + +1.9
2,895,491 + -2.1
2,895,491 + -0.3
2,895,491 + +0.3
2,895,491 + -1.1
2,895,491 + +0.5
2,895,492 - +0.5
2,895,492 - +1.9
2,895,492 - +0.3
2,895,492 - +0.9
2,895,498 + -1.7
2,895,498 + -0.1
2,895,499 - +0.7
2,895,499 - +0.3
2,895,535 + -1.6
2,895,536 - -0.3
2,895,919 + Pf1N1B4_2552 0.82 +1.3
2,895,919 + Pf1N1B4_2552 0.82 -1.3
2,895,919 + Pf1N1B4_2552 0.82 -0.7
2,895,920 - Pf1N1B4_2552 0.82 +0.9
2,895,920 - Pf1N1B4_2552 0.82 -1.7
2,895,920 - Pf1N1B4_2552 0.82 -0.9
2,895,920 - Pf1N1B4_2552 0.82 -0.4
2,895,920 - Pf1N1B4_2552 0.82 -1.1
2,895,920 - Pf1N1B4_2552 0.82 -0.5
2,895,920 - Pf1N1B4_2552 0.82 -1.5
2,895,973 + -1.3
2,896,051 + -0.2
2,896,051 + -1.1
2,896,051 + +0.7
2,896,052 - -0.3
2,896,052 - +0.5
2,896,065 - -2.5
2,896,079 + +1.1
2,896,079 + -0.7
2,896,079 + +0.3
2,896,079 + -1.2
2,896,080 - -1.2
2,896,102 - +1.9
2,896,102 - +1.9
2,896,171 + -0.7
2,896,171 + -0.0
2,896,172 - -0.3
2,896,172 - +1.0
2,896,851 + -0.1
2,896,852 - +0.5
2,896,852 - -0.7
2,896,955 + -0.1
2,896,955 + +0.6

Or see this region's nucleotide sequence