Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2419

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2418 and Pf1N1B4_2419 are separated by 322 nucleotidesPf1N1B4_2419 and Pf1N1B4_2420 are separated by 198 nucleotides Pf1N1B4_2418 - HTH-type transcriptional regulator BetI, at 2,742,001 to 2,742,594 _2418 Pf1N1B4_2419 - High-affinity choline uptake protein BetT, at 2,742,917 to 2,744,923 _2419 Pf1N1B4_2420 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 2,745,122 to 2,746,300 _2420 Position (kb) 2742 2743 2744 2745Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2741.918 kb on - strandat 2741.918 kb on - strandat 2741.918 kb on - strandat 2741.918 kb on - strandat 2741.947 kb on + strandat 2741.947 kb on + strandat 2741.947 kb on + strandat 2741.948 kb on - strandat 2741.948 kb on - strandat 2741.948 kb on - strandat 2742.002 kb on + strandat 2742.002 kb on + strandat 2742.003 kb on - strandat 2742.035 kb on + strandat 2742.035 kb on + strandat 2742.035 kb on + strandat 2742.035 kb on + strandat 2742.036 kb on - strandat 2742.036 kb on - strandat 2742.036 kb on - strandat 2742.036 kb on - strandat 2742.036 kb on - strandat 2742.163 kb on + strand, within Pf1N1B4_2418at 2742.163 kb on + strand, within Pf1N1B4_2418at 2742.164 kb on - strand, within Pf1N1B4_2418at 2742.164 kb on - strand, within Pf1N1B4_2418at 2742.194 kb on + strand, within Pf1N1B4_2418at 2742.195 kb on - strandat 2742.322 kb on - strand, within Pf1N1B4_2418at 2742.407 kb on + strand, within Pf1N1B4_2418at 2742.408 kb on - strand, within Pf1N1B4_2418at 2742.408 kb on - strand, within Pf1N1B4_2418at 2742.408 kb on - strand, within Pf1N1B4_2418at 2742.450 kb on - strandat 2742.450 kb on - strand, within Pf1N1B4_2418at 2742.538 kb on + strandat 2742.538 kb on + strandat 2742.627 kb on + strandat 2742.627 kb on + strandat 2742.627 kb on + strandat 2742.627 kb on + strandat 2742.628 kb on - strandat 2742.628 kb on - strandat 2742.657 kb on - strandat 2742.657 kb on - strandat 2742.657 kb on - strandat 2742.732 kb on + strandat 2742.738 kb on + strandat 2742.738 kb on + strandat 2742.738 kb on + strandat 2742.738 kb on + strandat 2742.738 kb on + strandat 2742.738 kb on + strandat 2742.738 kb on + strandat 2742.738 kb on + strandat 2742.738 kb on + strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.739 kb on - strandat 2742.824 kb on + strandat 2742.824 kb on + strandat 2742.824 kb on + strandat 2742.824 kb on + strandat 2742.824 kb on + strandat 2742.824 kb on + strandat 2742.825 kb on - strandat 2742.825 kb on - strandat 2742.825 kb on - strandat 2742.825 kb on - strandat 2742.825 kb on - strandat 2742.825 kb on - strandat 2742.825 kb on - strandat 2742.825 kb on - strandat 2742.826 kb on + strandat 2742.827 kb on - strandat 2742.827 kb on - strandat 2742.827 kb on - strandat 2742.827 kb on - strandat 2742.827 kb on - strandat 2742.933 kb on + strandat 2742.934 kb on - strandat 2742.934 kb on - strandat 2742.936 kb on + strandat 2742.937 kb on - strandat 2742.980 kb on + strandat 2742.980 kb on + strandat 2742.980 kb on + strandat 2742.980 kb on + strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2742.981 kb on - strandat 2743.005 kb on + strandat 2743.006 kb on - strandat 2743.097 kb on + strandat 2743.097 kb on + strandat 2743.097 kb on + strandat 2743.097 kb on + strandat 2743.097 kb on + strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.098 kb on - strandat 2743.118 kb on + strand, within Pf1N1B4_2419at 2743.119 kb on - strand, within Pf1N1B4_2419at 2743.202 kb on + strand, within Pf1N1B4_2419at 2743.203 kb on - strand, within Pf1N1B4_2419at 2743.203 kb on - strand, within Pf1N1B4_2419at 2743.203 kb on - strand, within Pf1N1B4_2419at 2743.256 kb on + strand, within Pf1N1B4_2419at 2743.286 kb on + strand, within Pf1N1B4_2419at 2743.286 kb on + strand, within Pf1N1B4_2419at 2743.286 kb on + strand, within Pf1N1B4_2419at 2743.385 kb on + strand, within Pf1N1B4_2419at 2743.385 kb on + strand, within Pf1N1B4_2419at 2743.386 kb on - strand, within Pf1N1B4_2419at 2743.386 kb on - strand, within Pf1N1B4_2419at 2743.386 kb on - strand, within Pf1N1B4_2419at 2743.386 kb on - strand, within Pf1N1B4_2419at 2743.386 kb on - strand, within Pf1N1B4_2419at 2743.386 kb on - strand, within Pf1N1B4_2419at 2743.412 kb on + strand, within Pf1N1B4_2419at 2743.413 kb on - strand, within Pf1N1B4_2419at 2743.430 kb on - strand, within Pf1N1B4_2419at 2743.847 kb on + strand, within Pf1N1B4_2419at 2743.847 kb on + strand, within Pf1N1B4_2419at 2743.847 kb on + strand, within Pf1N1B4_2419at 2743.847 kb on + strand, within Pf1N1B4_2419at 2743.848 kb on - strand, within Pf1N1B4_2419at 2743.848 kb on - strand, within Pf1N1B4_2419at 2743.848 kb on - strand, within Pf1N1B4_2419at 2743.853 kb on + strand, within Pf1N1B4_2419at 2743.853 kb on + strand, within Pf1N1B4_2419at 2743.854 kb on - strandat 2743.854 kb on - strand, within Pf1N1B4_2419at 2743.907 kb on + strand, within Pf1N1B4_2419at 2743.907 kb on + strand, within Pf1N1B4_2419at 2743.960 kb on + strandat 2743.961 kb on - strand, within Pf1N1B4_2419at 2744.132 kb on + strand, within Pf1N1B4_2419at 2744.132 kb on + strand, within Pf1N1B4_2419at 2744.133 kb on - strand, within Pf1N1B4_2419at 2744.150 kb on + strand, within Pf1N1B4_2419at 2744.150 kb on + strand, within Pf1N1B4_2419at 2744.706 kb on - strandat 2744.706 kb on - strand, within Pf1N1B4_2419at 2744.706 kb on - strand, within Pf1N1B4_2419at 2744.804 kb on + strandat 2744.804 kb on + strandat 2744.804 kb on + strandat 2744.805 kb on - strandat 2744.805 kb on - strandat 2744.828 kb on + strandat 2744.828 kb on + strandat 2744.915 kb on + strandat 2744.916 kb on - strandat 2744.917 kb on + strandat 2744.917 kb on + strandat 2744.917 kb on + strandat 2744.917 kb on + strandat 2744.917 kb on + strandat 2744.918 kb on - strandat 2744.918 kb on - strandat 2745.154 kb on - strandat 2745.154 kb on - strandat 2745.473 kb on + strand, within Pf1N1B4_2420at 2745.473 kb on + strand, within Pf1N1B4_2420at 2745.474 kb on - strand, within Pf1N1B4_2420at 2745.474 kb on - strand, within Pf1N1B4_2420at 2745.474 kb on - strand, within Pf1N1B4_2420at 2745.474 kb on - strand, within Pf1N1B4_2420at 2745.474 kb on - strand, within Pf1N1B4_2420at 2745.474 kb on - strand, within Pf1N1B4_2420at 2745.474 kb on - strand, within Pf1N1B4_2420at 2745.474 kb on - strand, within Pf1N1B4_2420at 2745.513 kb on + strand, within Pf1N1B4_2420at 2745.514 kb on - strand, within Pf1N1B4_2420at 2745.514 kb on - strand, within Pf1N1B4_2420at 2745.555 kb on + strand, within Pf1N1B4_2420

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,741,918 - -0.7
2,741,918 - -1.9
2,741,918 - -0.1
2,741,918 - +0.8
2,741,947 + -2.0
2,741,947 + -1.7
2,741,947 + -1.5
2,741,948 - +1.6
2,741,948 - +1.0
2,741,948 - +1.7
2,742,002 + -3.3
2,742,002 + -2.0
2,742,003 - -1.3
2,742,035 + -3.0
2,742,035 + -1.7
2,742,035 + -3.5
2,742,035 + -1.6
2,742,036 - -0.0
2,742,036 - -0.7
2,742,036 - -2.4
2,742,036 - -0.7
2,742,036 - -1.7
2,742,163 + Pf1N1B4_2418 0.27 -3.0
2,742,163 + Pf1N1B4_2418 0.27 -0.7
2,742,164 - Pf1N1B4_2418 0.27 -0.7
2,742,164 - Pf1N1B4_2418 0.27 -2.3
2,742,194 + Pf1N1B4_2418 0.32 -1.3
2,742,195 - +0.3
2,742,322 - Pf1N1B4_2418 0.54 -1.3
2,742,407 + Pf1N1B4_2418 0.68 -3.6
2,742,408 - Pf1N1B4_2418 0.69 -1.0
2,742,408 - Pf1N1B4_2418 0.69 -1.3
2,742,408 - Pf1N1B4_2418 0.69 -1.8
2,742,450 - +0.3
2,742,450 - Pf1N1B4_2418 0.76 -1.3
2,742,538 + +0.3
2,742,538 + -2.0
2,742,627 + -4.3
2,742,627 + -3.3
2,742,627 + -1.3
2,742,627 + -1.7
2,742,628 - +1.2
2,742,628 - +0.1
2,742,657 - -0.3
2,742,657 - +1.9
2,742,657 - +1.7
2,742,732 + -1.3
2,742,738 + -2.7
2,742,738 + -3.1
2,742,738 + -3.0
2,742,738 + +1.9
2,742,738 + -2.0
2,742,738 + -0.7
2,742,738 + -4.9
2,742,738 + -2.5
2,742,738 + -2.7
2,742,739 - +1.5
2,742,739 - -0.0
2,742,739 - +0.7
2,742,739 - +1.9
2,742,739 - +1.5
2,742,739 - +2.0
2,742,739 - +2.6
2,742,739 - +2.8
2,742,739 - +1.7
2,742,739 - +1.7
2,742,739 - +1.5
2,742,739 - +1.7
2,742,739 - +1.5
2,742,739 - +1.3
2,742,739 - +1.9
2,742,739 - +1.5
2,742,739 - +1.6
2,742,824 + -0.7
2,742,824 + -1.7
2,742,824 + -3.1
2,742,824 + -0.7
2,742,824 + -0.7
2,742,824 + -3.3
2,742,825 - +0.3
2,742,825 - +1.2
2,742,825 - +3.3
2,742,825 - -0.7
2,742,825 - +1.4
2,742,825 - +0.7
2,742,825 - +2.1
2,742,825 - +1.0
2,742,826 + -1.7
2,742,827 - +2.4
2,742,827 - +2.3
2,742,827 - +1.9
2,742,827 - +3.5
2,742,827 - +0.9
2,742,933 + +0.6
2,742,934 - +1.7
2,742,934 - +2.7
2,742,936 + +1.3
2,742,937 - +1.4
2,742,980 + +0.7
2,742,980 + +1.1
2,742,980 + -0.7
2,742,980 + +0.6
2,742,981 - +1.3
2,742,981 - +1.8
2,742,981 - +1.2
2,742,981 - +1.6
2,742,981 - +2.2
2,742,981 - +2.6
2,742,981 - +1.6
2,742,981 - +2.6
2,742,981 - +1.4
2,742,981 - +1.5
2,742,981 - +1.9
2,743,005 + +1.1
2,743,006 - +1.5
2,743,097 + +3.5
2,743,097 + +1.9
2,743,097 + +0.3
2,743,097 + +1.3
2,743,097 + -0.7
2,743,098 - +2.4
2,743,098 - +1.6
2,743,098 - +0.7
2,743,098 - +2.6
2,743,098 - +1.2
2,743,098 - +3.5
2,743,098 - +1.9
2,743,098 - +2.7
2,743,098 - +1.5
2,743,098 - -0.3
2,743,098 - +2.6
2,743,118 + Pf1N1B4_2419 0.10 +0.3
2,743,119 - Pf1N1B4_2419 0.10 +2.6
2,743,202 + Pf1N1B4_2419 0.14 +1.3
2,743,203 - Pf1N1B4_2419 0.14 +2.7
2,743,203 - Pf1N1B4_2419 0.14 +1.9
2,743,203 - Pf1N1B4_2419 0.14 +1.5
2,743,256 + Pf1N1B4_2419 0.17 -1.3
2,743,286 + Pf1N1B4_2419 0.18 +2.0
2,743,286 + Pf1N1B4_2419 0.18 +1.5
2,743,286 + Pf1N1B4_2419 0.18 +2.6
2,743,385 + Pf1N1B4_2419 0.23 -1.3
2,743,385 + Pf1N1B4_2419 0.23 +0.8
2,743,386 - Pf1N1B4_2419 0.23 +2.3
2,743,386 - Pf1N1B4_2419 0.23 +0.3
2,743,386 - Pf1N1B4_2419 0.23 +2.6
2,743,386 - Pf1N1B4_2419 0.23 +1.1
2,743,386 - Pf1N1B4_2419 0.23 -1.0
2,743,386 - Pf1N1B4_2419 0.23 +1.3
2,743,412 + Pf1N1B4_2419 0.25 -0.1
2,743,413 - Pf1N1B4_2419 0.25 +1.3
2,743,430 - Pf1N1B4_2419 0.26 +3.5
2,743,847 + Pf1N1B4_2419 0.46 +0.9
2,743,847 + Pf1N1B4_2419 0.46 +0.8
2,743,847 + Pf1N1B4_2419 0.46 +1.9
2,743,847 + Pf1N1B4_2419 0.46 +0.7
2,743,848 - Pf1N1B4_2419 0.46 +1.9
2,743,848 - Pf1N1B4_2419 0.46 -1.0
2,743,848 - Pf1N1B4_2419 0.46 +1.5
2,743,853 + Pf1N1B4_2419 0.47 +0.1
2,743,853 + Pf1N1B4_2419 0.47 -1.3
2,743,854 - +0.3
2,743,854 - Pf1N1B4_2419 0.47 +0.3
2,743,907 + Pf1N1B4_2419 0.49 +0.4
2,743,907 + Pf1N1B4_2419 0.49 +1.1
2,743,960 + +0.3
2,743,961 - Pf1N1B4_2419 0.52 +1.6
2,744,132 + Pf1N1B4_2419 0.61 +3.1
2,744,132 + Pf1N1B4_2419 0.61 +2.1
2,744,133 - Pf1N1B4_2419 0.61 +2.3
2,744,150 + Pf1N1B4_2419 0.61 -0.3
2,744,150 + Pf1N1B4_2419 0.61 +1.8
2,744,706 - +1.3
2,744,706 - Pf1N1B4_2419 0.89 +1.9
2,744,706 - Pf1N1B4_2419 0.89 -1.7
2,744,804 + +0.3
2,744,804 + -0.9
2,744,804 + -0.7
2,744,805 - -1.7
2,744,805 - +0.1
2,744,828 + +1.3
2,744,828 + +0.3
2,744,915 + -0.1
2,744,916 - +2.8
2,744,917 + +2.5
2,744,917 + +0.3
2,744,917 + +2.5
2,744,917 + +0.3
2,744,917 + +0.0
2,744,918 - +2.6
2,744,918 - +0.2
2,745,154 - -0.6
2,745,154 - -0.4
2,745,473 + Pf1N1B4_2420 0.30 +1.3
2,745,473 + Pf1N1B4_2420 0.30 +1.8
2,745,474 - Pf1N1B4_2420 0.30 -3.6
2,745,474 - Pf1N1B4_2420 0.30 -0.7
2,745,474 - Pf1N1B4_2420 0.30 +0.5
2,745,474 - Pf1N1B4_2420 0.30 -0.7
2,745,474 - Pf1N1B4_2420 0.30 +2.9
2,745,474 - Pf1N1B4_2420 0.30 -0.1
2,745,474 - Pf1N1B4_2420 0.30 -0.7
2,745,474 - Pf1N1B4_2420 0.30 +0.1
2,745,513 + Pf1N1B4_2420 0.33 -1.3
2,745,514 - Pf1N1B4_2420 0.33 -0.4
2,745,514 - Pf1N1B4_2420 0.33 -0.7
2,745,555 + Pf1N1B4_2420 0.37 +2.2

Or see this region's nucleotide sequence