Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1962 and Pf1N1B4_1963 are separated by 14 nucleotides Pf1N1B4_1963 and Pf1N1B4_1964 are separated by 0 nucleotides
Pf1N1B4_1962 - Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40), at 2,242,531 to 2,243,769
_1962
Pf1N1B4_1963 - O-antigen export system permease protein RfbD, at 2,243,784 to 2,244,581
_1963
Pf1N1B4_1964 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 2,244,582 to 2,246,024
_1964
Position (kb)
2243
2244
2245 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2242.823 kb on + strand, within Pf1N1B4_1962 at 2242.823 kb on + strand, within Pf1N1B4_1962 at 2242.823 kb on + strand, within Pf1N1B4_1962 at 2242.823 kb on + strand, within Pf1N1B4_1962 at 2242.823 kb on + strand, within Pf1N1B4_1962 at 2242.823 kb on + strand, within Pf1N1B4_1962 at 2242.823 kb on + strand at 2242.824 kb on - strand, within Pf1N1B4_1962 at 2242.824 kb on - strand, within Pf1N1B4_1962 at 2243.078 kb on + strand, within Pf1N1B4_1962 at 2243.078 kb on + strand, within Pf1N1B4_1962 at 2243.078 kb on + strand, within Pf1N1B4_1962 at 2243.078 kb on + strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.079 kb on - strand, within Pf1N1B4_1962 at 2243.081 kb on + strand, within Pf1N1B4_1962 at 2243.082 kb on - strand, within Pf1N1B4_1962 at 2243.249 kb on + strand, within Pf1N1B4_1962 at 2243.249 kb on + strand, within Pf1N1B4_1962 at 2243.249 kb on + strand, within Pf1N1B4_1962 at 2243.250 kb on - strand, within Pf1N1B4_1962 at 2243.348 kb on + strand, within Pf1N1B4_1962 at 2243.348 kb on + strand, within Pf1N1B4_1962 at 2243.348 kb on + strand, within Pf1N1B4_1962 at 2243.349 kb on - strand, within Pf1N1B4_1962 at 2243.589 kb on + strand, within Pf1N1B4_1962 at 2243.590 kb on - strand, within Pf1N1B4_1962 at 2243.590 kb on - strand, within Pf1N1B4_1962 at 2243.590 kb on - strand, within Pf1N1B4_1962 at 2243.653 kb on + strand at 2243.654 kb on - strand at 2243.654 kb on - strand at 2243.654 kb on - strand at 2243.738 kb on + strand at 2243.747 kb on + strand at 2243.747 kb on + strand at 2243.748 kb on - strand at 2243.748 kb on - strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.773 kb on + strand at 2243.774 kb on - strand at 2243.774 kb on - strand at 2243.774 kb on - strand at 2243.774 kb on - strand at 2243.774 kb on - strand at 2243.774 kb on - strand at 2243.774 kb on - strand at 2243.774 kb on - strand at 2243.774 kb on - strand at 2243.920 kb on + strand, within Pf1N1B4_1963 at 2243.921 kb on - strand, within Pf1N1B4_1963 at 2243.921 kb on - strand at 2244.364 kb on + strand, within Pf1N1B4_1963 at 2244.364 kb on + strand, within Pf1N1B4_1963 at 2244.365 kb on - strand, within Pf1N1B4_1963 at 2244.365 kb on - strand, within Pf1N1B4_1963 at 2244.365 kb on - strand, within Pf1N1B4_1963 at 2244.365 kb on - strand, within Pf1N1B4_1963 at 2244.365 kb on - strand, within Pf1N1B4_1963 at 2244.373 kb on + strand, within Pf1N1B4_1963 at 2244.373 kb on + strand, within Pf1N1B4_1963 at 2244.374 kb on - strand, within Pf1N1B4_1963 at 2244.374 kb on - strand, within Pf1N1B4_1963 at 2244.374 kb on - strand, within Pf1N1B4_1963 at 2244.436 kb on + strand, within Pf1N1B4_1963 at 2244.436 kb on + strand at 2244.436 kb on + strand, within Pf1N1B4_1963 at 2244.437 kb on - strand, within Pf1N1B4_1963 at 2244.437 kb on - strand, within Pf1N1B4_1963 at 2244.637 kb on + strand at 2244.637 kb on + strand at 2244.637 kb on + strand at 2244.637 kb on + strand at 2244.637 kb on + strand at 2244.638 kb on - strand at 2244.857 kb on + strand, within Pf1N1B4_1964 at 2244.858 kb on - strand, within Pf1N1B4_1964 at 2244.898 kb on + strand, within Pf1N1B4_1964 at 2244.898 kb on + strand, within Pf1N1B4_1964 at 2244.898 kb on + strand, within Pf1N1B4_1964 at 2244.898 kb on + strand, within Pf1N1B4_1964 at 2244.898 kb on + strand, within Pf1N1B4_1964 at 2244.898 kb on + strand at 2244.898 kb on + strand, within Pf1N1B4_1964 at 2244.899 kb on - strand, within Pf1N1B4_1964 at 2244.899 kb on - strand, within Pf1N1B4_1964 at 2244.899 kb on - strand, within Pf1N1B4_1964 at 2244.899 kb on - strand, within Pf1N1B4_1964 at 2244.899 kb on - strand, within Pf1N1B4_1964 at 2244.899 kb on - strand, within Pf1N1B4_1964 at 2244.899 kb on - strand, within Pf1N1B4_1964 at 2244.938 kb on - strand, within Pf1N1B4_1964 at 2245.047 kb on - strand, within Pf1N1B4_1964 at 2245.250 kb on - strand, within Pf1N1B4_1964 at 2245.460 kb on - strand, within Pf1N1B4_1964 at 2245.460 kb on - strand, within Pf1N1B4_1964 at 2245.460 kb on - strand, within Pf1N1B4_1964
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 2,242,823 + Pf1N1B4_1962 0.24 -1.2 2,242,823 + Pf1N1B4_1962 0.24 -0.5 2,242,823 + Pf1N1B4_1962 0.24 -0.8 2,242,823 + Pf1N1B4_1962 0.24 -0.1 2,242,823 + Pf1N1B4_1962 0.24 +0.3 2,242,823 + Pf1N1B4_1962 0.24 -0.9 2,242,823 + +0.5 2,242,824 - Pf1N1B4_1962 0.24 -1.5 2,242,824 - Pf1N1B4_1962 0.24 -0.8 2,243,078 + Pf1N1B4_1962 0.44 +2.5 2,243,078 + Pf1N1B4_1962 0.44 +1.2 2,243,078 + Pf1N1B4_1962 0.44 -0.1 2,243,078 + Pf1N1B4_1962 0.44 -0.1 2,243,079 - Pf1N1B4_1962 0.44 -1.1 2,243,079 - Pf1N1B4_1962 0.44 +1.3 2,243,079 - Pf1N1B4_1962 0.44 +0.9 2,243,079 - Pf1N1B4_1962 0.44 -1.8 2,243,079 - Pf1N1B4_1962 0.44 +0.1 2,243,079 - Pf1N1B4_1962 0.44 +1.0 2,243,079 - Pf1N1B4_1962 0.44 -1.1 2,243,079 - Pf1N1B4_1962 0.44 +1.8 2,243,079 - Pf1N1B4_1962 0.44 -0.5 2,243,081 + Pf1N1B4_1962 0.44 +1.9 2,243,082 - Pf1N1B4_1962 0.44 +1.1 2,243,249 + Pf1N1B4_1962 0.58 +0.1 2,243,249 + Pf1N1B4_1962 0.58 +1.1 2,243,249 + Pf1N1B4_1962 0.58 +1.1 2,243,250 - Pf1N1B4_1962 0.58 -0.2 2,243,348 + Pf1N1B4_1962 0.66 -0.8 2,243,348 + Pf1N1B4_1962 0.66 +1.3 2,243,348 + Pf1N1B4_1962 0.66 -1.5 2,243,349 - Pf1N1B4_1962 0.66 +0.3 2,243,589 + Pf1N1B4_1962 0.85 +1.7 2,243,590 - Pf1N1B4_1962 0.85 +0.6 2,243,590 - Pf1N1B4_1962 0.85 +0.5 2,243,590 - Pf1N1B4_1962 0.85 +0.0 2,243,653 + -2.5 2,243,654 - +0.0 2,243,654 - +0.2 2,243,654 - +0.1 2,243,738 + +0.9 2,243,747 + -1.5 2,243,747 + -0.2 2,243,748 - -1.5 2,243,748 - +1.5 2,243,773 + +1.9 2,243,773 + +1.6 2,243,773 + +0.5 2,243,773 + +0.3 2,243,773 + +1.3 2,243,773 + +1.8 2,243,773 + +0.8 2,243,773 + -0.2 2,243,773 + +0.8 2,243,773 + +1.1 2,243,774 - -0.5 2,243,774 - -0.5 2,243,774 - +0.5 2,243,774 - +1.3 2,243,774 - -1.5 2,243,774 - +1.5 2,243,774 - -0.2 2,243,774 - +0.2 2,243,774 - +1.2 2,243,920 + Pf1N1B4_1963 0.17 +1.3 2,243,921 - Pf1N1B4_1963 0.17 -0.5 2,243,921 - +0.8 2,244,364 + Pf1N1B4_1963 0.73 -1.1 2,244,364 + Pf1N1B4_1963 0.73 +0.8 2,244,365 - Pf1N1B4_1963 0.73 -0.5 2,244,365 - Pf1N1B4_1963 0.73 -1.1 2,244,365 - Pf1N1B4_1963 0.73 +1.3 2,244,365 - Pf1N1B4_1963 0.73 +0.3 2,244,365 - Pf1N1B4_1963 0.73 +0.3 2,244,373 + Pf1N1B4_1963 0.74 -1.5 2,244,373 + Pf1N1B4_1963 0.74 +2.8 2,244,374 - Pf1N1B4_1963 0.74 +0.5 2,244,374 - Pf1N1B4_1963 0.74 +2.1 2,244,374 - Pf1N1B4_1963 0.74 +1.1 2,244,436 + Pf1N1B4_1963 0.82 +2.8 2,244,436 + +0.1 2,244,436 + Pf1N1B4_1963 0.82 +1.1 2,244,437 - Pf1N1B4_1963 0.82 -0.7 2,244,437 - Pf1N1B4_1963 0.82 +1.0 2,244,637 + +0.3 2,244,637 + +1.5 2,244,637 + +0.5 2,244,637 + -1.5 2,244,637 + +0.5 2,244,638 - -1.7 2,244,857 + Pf1N1B4_1964 0.19 -0.8 2,244,858 - Pf1N1B4_1964 0.19 -0.2 2,244,898 + Pf1N1B4_1964 0.22 -0.5 2,244,898 + Pf1N1B4_1964 0.22 -0.3 2,244,898 + Pf1N1B4_1964 0.22 +0.5 2,244,898 + Pf1N1B4_1964 0.22 -0.1 2,244,898 + Pf1N1B4_1964 0.22 +1.5 2,244,898 + +0.5 2,244,898 + Pf1N1B4_1964 0.22 -0.5 2,244,899 - Pf1N1B4_1964 0.22 -1.5 2,244,899 - Pf1N1B4_1964 0.22 +0.9 2,244,899 - Pf1N1B4_1964 0.22 +1.5 2,244,899 - Pf1N1B4_1964 0.22 -0.8 2,244,899 - Pf1N1B4_1964 0.22 -0.5 2,244,899 - Pf1N1B4_1964 0.22 +0.5 2,244,899 - Pf1N1B4_1964 0.22 -0.5 2,244,938 - Pf1N1B4_1964 0.25 +0.9 2,245,047 - Pf1N1B4_1964 0.32 -0.1 2,245,250 - Pf1N1B4_1964 0.46 -0.3 2,245,460 - Pf1N1B4_1964 0.61 +0.5 2,245,460 - Pf1N1B4_1964 0.61 -2.1 2,245,460 - Pf1N1B4_1964 0.61 +0.7
Or see this region's nucleotide sequence