Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1915 and Pf1N1B4_1916 are separated by 131 nucleotides Pf1N1B4_1916 and Pf1N1B4_1917 are separated by 102 nucleotides
Pf1N1B4_1915 - Trk system potassium uptake protein TrkA, at 2,189,593 to 2,190,966
_1915
Pf1N1B4_1916 - Chaperone protein YscY (Yop proteins translocation protein Y), at 2,191,098 to 2,191,412
_1916
Pf1N1B4_1917 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 2,191,515 to 2,192,402
_1917
Position (kb)
2191
2192 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2190.215 kb on + strand, within Pf1N1B4_1915 at 2190.215 kb on + strand, within Pf1N1B4_1915 at 2190.215 kb on + strand, within Pf1N1B4_1915 at 2190.240 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand, within Pf1N1B4_1915 at 2190.283 kb on + strand at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.284 kb on - strand, within Pf1N1B4_1915 at 2190.291 kb on + strand, within Pf1N1B4_1915 at 2190.291 kb on + strand, within Pf1N1B4_1915 at 2190.291 kb on + strand, within Pf1N1B4_1915 at 2190.291 kb on + strand, within Pf1N1B4_1915 at 2190.291 kb on + strand, within Pf1N1B4_1915 at 2190.292 kb on - strand, within Pf1N1B4_1915 at 2190.292 kb on - strand, within Pf1N1B4_1915 at 2190.292 kb on - strand, within Pf1N1B4_1915 at 2190.292 kb on - strand, within Pf1N1B4_1915 at 2190.292 kb on - strand, within Pf1N1B4_1915 at 2190.360 kb on - strand, within Pf1N1B4_1915 at 2190.592 kb on + strand, within Pf1N1B4_1915 at 2190.592 kb on + strand, within Pf1N1B4_1915 at 2190.593 kb on - strand, within Pf1N1B4_1915 at 2190.593 kb on - strand, within Pf1N1B4_1915 at 2190.593 kb on - strand, within Pf1N1B4_1915 at 2190.593 kb on - strand, within Pf1N1B4_1915 at 2190.909 kb on + strand at 2190.918 kb on + strand at 2190.918 kb on + strand at 2191.173 kb on + strand, within Pf1N1B4_1916 at 2191.242 kb on + strand, within Pf1N1B4_1916 at 2191.243 kb on - strand, within Pf1N1B4_1916 at 2191.243 kb on - strand, within Pf1N1B4_1916 at 2191.262 kb on - strand, within Pf1N1B4_1916 at 2191.407 kb on + strand at 2191.407 kb on + strand at 2191.407 kb on + strand at 2191.408 kb on - strand at 2191.408 kb on - strand at 2191.420 kb on + strand at 2191.420 kb on + strand at 2191.420 kb on + strand at 2191.420 kb on + strand at 2191.420 kb on + strand at 2191.420 kb on + strand at 2191.421 kb on - strand at 2191.421 kb on - strand at 2191.464 kb on + strand at 2191.520 kb on - strand at 2192.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 2,190,215 + Pf1N1B4_1915 0.45 +1.1 2,190,215 + Pf1N1B4_1915 0.45 +1.7 2,190,215 + Pf1N1B4_1915 0.45 +1.2 2,190,240 + Pf1N1B4_1915 0.47 +1.5 2,190,283 + Pf1N1B4_1915 0.50 +2.4 2,190,283 + Pf1N1B4_1915 0.50 +0.5 2,190,283 + Pf1N1B4_1915 0.50 +0.6 2,190,283 + Pf1N1B4_1915 0.50 +0.2 2,190,283 + Pf1N1B4_1915 0.50 +2.3 2,190,283 + Pf1N1B4_1915 0.50 +0.8 2,190,283 + Pf1N1B4_1915 0.50 +1.5 2,190,283 + Pf1N1B4_1915 0.50 +1.8 2,190,283 + Pf1N1B4_1915 0.50 +0.3 2,190,283 + -0.1 2,190,284 - Pf1N1B4_1915 0.50 -1.8 2,190,284 - Pf1N1B4_1915 0.50 +0.9 2,190,284 - Pf1N1B4_1915 0.50 -1.2 2,190,284 - Pf1N1B4_1915 0.50 -0.1 2,190,284 - Pf1N1B4_1915 0.50 +0.9 2,190,284 - Pf1N1B4_1915 0.50 -0.1 2,190,284 - Pf1N1B4_1915 0.50 -0.3 2,190,284 - Pf1N1B4_1915 0.50 -0.9 2,190,284 - Pf1N1B4_1915 0.50 -1.1 2,190,284 - Pf1N1B4_1915 0.50 -1.3 2,190,291 + Pf1N1B4_1915 0.51 +0.8 2,190,291 + Pf1N1B4_1915 0.51 +2.4 2,190,291 + Pf1N1B4_1915 0.51 +1.1 2,190,291 + Pf1N1B4_1915 0.51 +3.9 2,190,291 + Pf1N1B4_1915 0.51 +1.5 2,190,292 - Pf1N1B4_1915 0.51 -3.0 2,190,292 - Pf1N1B4_1915 0.51 -1.1 2,190,292 - Pf1N1B4_1915 0.51 -0.4 2,190,292 - Pf1N1B4_1915 0.51 -0.7 2,190,292 - Pf1N1B4_1915 0.51 +0.8 2,190,360 - Pf1N1B4_1915 0.56 -1.5 2,190,592 + Pf1N1B4_1915 0.73 +1.8 2,190,592 + Pf1N1B4_1915 0.73 +2.2 2,190,593 - Pf1N1B4_1915 0.73 -0.7 2,190,593 - Pf1N1B4_1915 0.73 +0.5 2,190,593 - Pf1N1B4_1915 0.73 -1.6 2,190,593 - Pf1N1B4_1915 0.73 -0.8 2,190,909 + +2.9 2,190,918 + +2.0 2,190,918 + +2.5 2,191,173 + Pf1N1B4_1916 0.24 -0.5 2,191,242 + Pf1N1B4_1916 0.46 +0.5 2,191,243 - Pf1N1B4_1916 0.46 -2.1 2,191,243 - Pf1N1B4_1916 0.46 -0.9 2,191,262 - Pf1N1B4_1916 0.52 -1.1 2,191,407 + -0.8 2,191,407 + -1.7 2,191,407 + +0.5 2,191,408 - -0.2 2,191,408 - -1.1 2,191,420 + -0.8 2,191,420 + +0.5 2,191,420 + -0.5 2,191,420 + +0.5 2,191,420 + -0.8 2,191,420 + +2.1 2,191,421 - -2.3 2,191,421 - +1.5 2,191,464 + -0.2 2,191,520 - -1.5 2,192,397 - +0.5
Or see this region's nucleotide sequence