Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1916

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1915 and Pf1N1B4_1916 are separated by 131 nucleotidesPf1N1B4_1916 and Pf1N1B4_1917 are separated by 102 nucleotides Pf1N1B4_1915 - Trk system potassium uptake protein TrkA, at 2,189,593 to 2,190,966 _1915 Pf1N1B4_1916 - Chaperone protein YscY (Yop proteins translocation protein Y), at 2,191,098 to 2,191,412 _1916 Pf1N1B4_1917 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 2,191,515 to 2,192,402 _1917 Position (kb) 2191 2192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2190.215 kb on + strand, within Pf1N1B4_1915at 2190.215 kb on + strand, within Pf1N1B4_1915at 2190.215 kb on + strand, within Pf1N1B4_1915at 2190.240 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strandat 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.360 kb on - strand, within Pf1N1B4_1915at 2190.592 kb on + strand, within Pf1N1B4_1915at 2190.592 kb on + strand, within Pf1N1B4_1915at 2190.593 kb on - strand, within Pf1N1B4_1915at 2190.593 kb on - strand, within Pf1N1B4_1915at 2190.593 kb on - strand, within Pf1N1B4_1915at 2190.593 kb on - strand, within Pf1N1B4_1915at 2190.909 kb on + strandat 2190.918 kb on + strandat 2190.918 kb on + strandat 2191.173 kb on + strand, within Pf1N1B4_1916at 2191.242 kb on + strand, within Pf1N1B4_1916at 2191.243 kb on - strand, within Pf1N1B4_1916at 2191.243 kb on - strand, within Pf1N1B4_1916at 2191.262 kb on - strand, within Pf1N1B4_1916at 2191.407 kb on + strandat 2191.407 kb on + strandat 2191.407 kb on + strandat 2191.408 kb on - strandat 2191.408 kb on - strandat 2191.420 kb on + strandat 2191.420 kb on + strandat 2191.420 kb on + strandat 2191.420 kb on + strandat 2191.420 kb on + strandat 2191.420 kb on + strandat 2191.421 kb on - strandat 2191.421 kb on - strandat 2191.464 kb on + strandat 2191.520 kb on - strandat 2192.397 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
2,190,215 + Pf1N1B4_1915 0.45 +1.1
2,190,215 + Pf1N1B4_1915 0.45 +1.7
2,190,215 + Pf1N1B4_1915 0.45 +1.2
2,190,240 + Pf1N1B4_1915 0.47 +1.5
2,190,283 + Pf1N1B4_1915 0.50 +2.4
2,190,283 + Pf1N1B4_1915 0.50 +0.5
2,190,283 + Pf1N1B4_1915 0.50 +0.6
2,190,283 + Pf1N1B4_1915 0.50 +0.2
2,190,283 + Pf1N1B4_1915 0.50 +2.3
2,190,283 + Pf1N1B4_1915 0.50 +0.8
2,190,283 + Pf1N1B4_1915 0.50 +1.5
2,190,283 + Pf1N1B4_1915 0.50 +1.8
2,190,283 + Pf1N1B4_1915 0.50 +0.3
2,190,283 + -0.1
2,190,284 - Pf1N1B4_1915 0.50 -1.8
2,190,284 - Pf1N1B4_1915 0.50 +0.9
2,190,284 - Pf1N1B4_1915 0.50 -1.2
2,190,284 - Pf1N1B4_1915 0.50 -0.1
2,190,284 - Pf1N1B4_1915 0.50 +0.9
2,190,284 - Pf1N1B4_1915 0.50 -0.1
2,190,284 - Pf1N1B4_1915 0.50 -0.3
2,190,284 - Pf1N1B4_1915 0.50 -0.9
2,190,284 - Pf1N1B4_1915 0.50 -1.1
2,190,284 - Pf1N1B4_1915 0.50 -1.3
2,190,291 + Pf1N1B4_1915 0.51 +0.8
2,190,291 + Pf1N1B4_1915 0.51 +2.4
2,190,291 + Pf1N1B4_1915 0.51 +1.1
2,190,291 + Pf1N1B4_1915 0.51 +3.9
2,190,291 + Pf1N1B4_1915 0.51 +1.5
2,190,292 - Pf1N1B4_1915 0.51 -3.0
2,190,292 - Pf1N1B4_1915 0.51 -1.1
2,190,292 - Pf1N1B4_1915 0.51 -0.4
2,190,292 - Pf1N1B4_1915 0.51 -0.7
2,190,292 - Pf1N1B4_1915 0.51 +0.8
2,190,360 - Pf1N1B4_1915 0.56 -1.5
2,190,592 + Pf1N1B4_1915 0.73 +1.8
2,190,592 + Pf1N1B4_1915 0.73 +2.2
2,190,593 - Pf1N1B4_1915 0.73 -0.7
2,190,593 - Pf1N1B4_1915 0.73 +0.5
2,190,593 - Pf1N1B4_1915 0.73 -1.6
2,190,593 - Pf1N1B4_1915 0.73 -0.8
2,190,909 + +2.9
2,190,918 + +2.0
2,190,918 + +2.5
2,191,173 + Pf1N1B4_1916 0.24 -0.5
2,191,242 + Pf1N1B4_1916 0.46 +0.5
2,191,243 - Pf1N1B4_1916 0.46 -2.1
2,191,243 - Pf1N1B4_1916 0.46 -0.9
2,191,262 - Pf1N1B4_1916 0.52 -1.1
2,191,407 + -0.8
2,191,407 + -1.7
2,191,407 + +0.5
2,191,408 - -0.2
2,191,408 - -1.1
2,191,420 + -0.8
2,191,420 + +0.5
2,191,420 + -0.5
2,191,420 + +0.5
2,191,420 + -0.8
2,191,420 + +2.1
2,191,421 - -2.3
2,191,421 - +1.5
2,191,464 + -0.2
2,191,520 - -1.5
2,192,397 - +0.5

Or see this region's nucleotide sequence