Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1865

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1864 and Pf1N1B4_1865 are separated by 60 nucleotidesPf1N1B4_1865 and Pf1N1B4_1866 overlap by 1 nucleotides Pf1N1B4_1864 - Methionine ABC transporter substrate-binding protein, at 2,133,652 to 2,134,425 _1864 Pf1N1B4_1865 - Methionine ABC transporter permease protein, at 2,134,486 to 2,135,160 _1865 Pf1N1B4_1866 - Methionine ABC transporter ATP-binding protein, at 2,135,160 to 2,136,167 _1866 Position (kb) 2134 2135 2136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2133.504 kb on + strandat 2133.505 kb on - strandat 2133.505 kb on - strandat 2133.505 kb on - strandat 2133.505 kb on - strandat 2133.505 kb on - strandat 2133.539 kb on + strandat 2133.540 kb on - strandat 2133.540 kb on - strandat 2133.540 kb on - strandat 2133.544 kb on + strandat 2133.545 kb on - strandat 2133.545 kb on - strandat 2133.545 kb on - strandat 2133.545 kb on - strandat 2133.545 kb on - strandat 2133.555 kb on + strandat 2133.556 kb on - strandat 2133.680 kb on + strandat 2133.680 kb on + strandat 2133.680 kb on + strandat 2133.680 kb on + strandat 2133.680 kb on + strandat 2133.680 kb on + strandat 2133.680 kb on + strandat 2133.680 kb on + strandat 2133.681 kb on - strandat 2133.681 kb on - strandat 2133.788 kb on + strand, within Pf1N1B4_1864at 2133.788 kb on + strand, within Pf1N1B4_1864at 2133.789 kb on - strand, within Pf1N1B4_1864at 2133.789 kb on - strand, within Pf1N1B4_1864at 2133.854 kb on + strand, within Pf1N1B4_1864at 2133.854 kb on + strand, within Pf1N1B4_1864at 2133.855 kb on - strand, within Pf1N1B4_1864at 2133.855 kb on - strand, within Pf1N1B4_1864at 2134.100 kb on + strand, within Pf1N1B4_1864at 2134.100 kb on + strand, within Pf1N1B4_1864at 2134.100 kb on + strand, within Pf1N1B4_1864at 2134.100 kb on + strand, within Pf1N1B4_1864at 2134.100 kb on + strand, within Pf1N1B4_1864at 2134.100 kb on + strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.101 kb on - strand, within Pf1N1B4_1864at 2134.112 kb on + strand, within Pf1N1B4_1864at 2134.112 kb on + strand, within Pf1N1B4_1864at 2134.113 kb on - strand, within Pf1N1B4_1864at 2134.191 kb on - strand, within Pf1N1B4_1864at 2134.256 kb on + strand, within Pf1N1B4_1864at 2134.256 kb on + strand, within Pf1N1B4_1864at 2134.257 kb on - strand, within Pf1N1B4_1864at 2134.257 kb on - strand, within Pf1N1B4_1864at 2134.257 kb on - strand, within Pf1N1B4_1864at 2134.257 kb on - strand, within Pf1N1B4_1864at 2134.257 kb on - strand, within Pf1N1B4_1864at 2134.257 kb on - strand, within Pf1N1B4_1864at 2134.414 kb on + strandat 2134.432 kb on - strandat 2134.487 kb on + strandat 2134.487 kb on + strandat 2134.487 kb on + strandat 2134.487 kb on + strandat 2134.487 kb on + strandat 2134.487 kb on + strandat 2134.487 kb on + strandat 2134.487 kb on + strandat 2134.488 kb on - strandat 2134.488 kb on - strandat 2134.488 kb on - strandat 2134.488 kb on - strandat 2134.488 kb on - strandat 2134.488 kb on - strandat 2134.488 kb on - strandat 2134.488 kb on - strandat 2134.488 kb on - strandat 2134.491 kb on + strandat 2134.491 kb on + strandat 2134.491 kb on + strandat 2134.491 kb on + strandat 2134.491 kb on + strandat 2134.491 kb on + strandat 2134.491 kb on + strandat 2134.491 kb on + strandat 2134.491 kb on + strandat 2134.492 kb on - strandat 2134.492 kb on - strandat 2134.492 kb on - strandat 2134.492 kb on - strandat 2134.492 kb on - strandat 2134.492 kb on - strandat 2134.492 kb on - strandat 2134.492 kb on - strandat 2134.492 kb on - strandat 2134.661 kb on + strand, within Pf1N1B4_1865at 2134.662 kb on - strand, within Pf1N1B4_1865at 2134.662 kb on - strand, within Pf1N1B4_1865at 2134.674 kb on + strand, within Pf1N1B4_1865at 2134.674 kb on + strand, within Pf1N1B4_1865at 2134.675 kb on - strand, within Pf1N1B4_1865at 2134.675 kb on - strand, within Pf1N1B4_1865at 2134.675 kb on - strandat 2134.689 kb on + strand, within Pf1N1B4_1865at 2134.689 kb on + strand, within Pf1N1B4_1865at 2134.690 kb on - strand, within Pf1N1B4_1865at 2134.932 kb on + strand, within Pf1N1B4_1865at 2134.932 kb on + strand, within Pf1N1B4_1865at 2134.932 kb on + strand, within Pf1N1B4_1865at 2134.932 kb on + strand, within Pf1N1B4_1865at 2134.933 kb on - strand, within Pf1N1B4_1865at 2134.933 kb on - strand, within Pf1N1B4_1865at 2134.933 kb on - strand, within Pf1N1B4_1865at 2134.982 kb on + strand, within Pf1N1B4_1865at 2134.983 kb on - strand, within Pf1N1B4_1865at 2135.065 kb on + strand, within Pf1N1B4_1865at 2135.065 kb on + strand, within Pf1N1B4_1865at 2135.066 kb on - strand, within Pf1N1B4_1865at 2135.095 kb on - strandat 2135.299 kb on + strand, within Pf1N1B4_1866at 2135.299 kb on + strand, within Pf1N1B4_1866at 2135.299 kb on + strand, within Pf1N1B4_1866at 2135.299 kb on + strand, within Pf1N1B4_1866at 2135.299 kb on + strand, within Pf1N1B4_1866at 2135.300 kb on - strand, within Pf1N1B4_1866at 2135.344 kb on + strand, within Pf1N1B4_1866at 2136.032 kb on + strand, within Pf1N1B4_1866at 2136.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,133,504 + +1.2
2,133,505 - +2.1
2,133,505 - +0.5
2,133,505 - +0.5
2,133,505 - -2.1
2,133,505 - +0.5
2,133,539 + -0.2
2,133,540 - -0.3
2,133,540 - -0.5
2,133,540 - -1.8
2,133,544 + -0.2
2,133,545 - +1.3
2,133,545 - +0.2
2,133,545 - -1.5
2,133,545 - +0.5
2,133,545 - -1.5
2,133,555 + -0.9
2,133,556 - +0.7
2,133,680 + -0.5
2,133,680 + +0.2
2,133,680 + -0.3
2,133,680 + -1.1
2,133,680 + +0.7
2,133,680 + +0.5
2,133,680 + +0.5
2,133,680 + -2.1
2,133,681 - +0.5
2,133,681 - -1.8
2,133,788 + Pf1N1B4_1864 0.18 +0.1
2,133,788 + Pf1N1B4_1864 0.18 +1.5
2,133,789 - Pf1N1B4_1864 0.18 -1.8
2,133,789 - Pf1N1B4_1864 0.18 +0.1
2,133,854 + Pf1N1B4_1864 0.26 -0.3
2,133,854 + Pf1N1B4_1864 0.26 -0.5
2,133,855 - Pf1N1B4_1864 0.26 -0.5
2,133,855 - Pf1N1B4_1864 0.26 +0.5
2,134,100 + Pf1N1B4_1864 0.58 -0.0
2,134,100 + Pf1N1B4_1864 0.58 +1.2
2,134,100 + Pf1N1B4_1864 0.58 -2.5
2,134,100 + Pf1N1B4_1864 0.58 +0.1
2,134,100 + Pf1N1B4_1864 0.58 +0.9
2,134,100 + Pf1N1B4_1864 0.58 +0.8
2,134,101 - Pf1N1B4_1864 0.58 -1.1
2,134,101 - Pf1N1B4_1864 0.58 +0.5
2,134,101 - Pf1N1B4_1864 0.58 +0.7
2,134,101 - Pf1N1B4_1864 0.58 +0.3
2,134,101 - Pf1N1B4_1864 0.58 -0.8
2,134,101 - Pf1N1B4_1864 0.58 -1.1
2,134,101 - Pf1N1B4_1864 0.58 +0.3
2,134,101 - Pf1N1B4_1864 0.58 +0.7
2,134,101 - Pf1N1B4_1864 0.58 -0.8
2,134,112 + Pf1N1B4_1864 0.59 +1.1
2,134,112 + Pf1N1B4_1864 0.59 -0.7
2,134,113 - Pf1N1B4_1864 0.60 +0.7
2,134,191 - Pf1N1B4_1864 0.70 -0.2
2,134,256 + Pf1N1B4_1864 0.78 +1.5
2,134,256 + Pf1N1B4_1864 0.78 -1.3
2,134,257 - Pf1N1B4_1864 0.78 +0.5
2,134,257 - Pf1N1B4_1864 0.78 -0.3
2,134,257 - Pf1N1B4_1864 0.78 -0.2
2,134,257 - Pf1N1B4_1864 0.78 +0.5
2,134,257 - Pf1N1B4_1864 0.78 -1.4
2,134,257 - Pf1N1B4_1864 0.78 -0.1
2,134,414 + +0.8
2,134,432 - +0.6
2,134,487 + -0.2
2,134,487 + -0.8
2,134,487 + +0.1
2,134,487 + -0.3
2,134,487 + +1.5
2,134,487 + +1.1
2,134,487 + +0.3
2,134,487 + -0.5
2,134,488 - +0.3
2,134,488 - -1.8
2,134,488 - +0.5
2,134,488 - +2.3
2,134,488 - -0.5
2,134,488 - -1.5
2,134,488 - +0.6
2,134,488 - +0.5
2,134,488 - +0.5
2,134,491 + +0.9
2,134,491 + -0.1
2,134,491 + +0.6
2,134,491 + +0.5
2,134,491 + -1.1
2,134,491 + +0.5
2,134,491 + +0.4
2,134,491 + -1.1
2,134,491 + -1.4
2,134,492 - -0.1
2,134,492 - +1.1
2,134,492 - +0.5
2,134,492 - -0.2
2,134,492 - +1.5
2,134,492 - -0.8
2,134,492 - -1.1
2,134,492 - -0.3
2,134,492 - -1.1
2,134,661 + Pf1N1B4_1865 0.26 -2.5
2,134,662 - Pf1N1B4_1865 0.26 -0.8
2,134,662 - Pf1N1B4_1865 0.26 +0.1
2,134,674 + Pf1N1B4_1865 0.28 -0.5
2,134,674 + Pf1N1B4_1865 0.28 -0.4
2,134,675 - Pf1N1B4_1865 0.28 +0.5
2,134,675 - Pf1N1B4_1865 0.28 +0.2
2,134,675 - +0.5
2,134,689 + Pf1N1B4_1865 0.30 -1.5
2,134,689 + Pf1N1B4_1865 0.30 -1.7
2,134,690 - Pf1N1B4_1865 0.30 -1.3
2,134,932 + Pf1N1B4_1865 0.66 -1.5
2,134,932 + Pf1N1B4_1865 0.66 -2.8
2,134,932 + Pf1N1B4_1865 0.66 -1.5
2,134,932 + Pf1N1B4_1865 0.66 -0.9
2,134,933 - Pf1N1B4_1865 0.66 -0.3
2,134,933 - Pf1N1B4_1865 0.66 -0.6
2,134,933 - Pf1N1B4_1865 0.66 -1.5
2,134,982 + Pf1N1B4_1865 0.73 +0.5
2,134,983 - Pf1N1B4_1865 0.74 +0.5
2,135,065 + Pf1N1B4_1865 0.86 -2.8
2,135,065 + Pf1N1B4_1865 0.86 -1.1
2,135,066 - Pf1N1B4_1865 0.86 -0.3
2,135,095 - -0.1
2,135,299 + Pf1N1B4_1866 0.14 -0.9
2,135,299 + Pf1N1B4_1866 0.14 -0.5
2,135,299 + Pf1N1B4_1866 0.14 +1.0
2,135,299 + Pf1N1B4_1866 0.14 -1.5
2,135,299 + Pf1N1B4_1866 0.14 -0.3
2,135,300 - Pf1N1B4_1866 0.14 -1.3
2,135,344 + Pf1N1B4_1866 0.18 -0.7
2,136,032 + Pf1N1B4_1866 0.87 -2.7
2,136,117 - +0.5

Or see this region's nucleotide sequence