Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1828 and Pf1N1B4_1829 overlap by 16 nucleotides Pf1N1B4_1829 and Pf1N1B4_1830 are separated by 216 nucleotides Pf1N1B4_1830 and Pf1N1B4_1831 overlap by 1 nucleotides
Pf1N1B4_1828 - Mobile element protein, at 2,105,255 to 2,106,046
_1828
Pf1N1B4_1829 - Mobile element protein, at 2,106,031 to 2,106,282
_1829
Pf1N1B4_1830 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 2,106,499 to 2,107,311
_1830
Pf1N1B4_1831 - Tryptophan synthase beta chain (EC 4.2.1.20), at 2,107,311 to 2,108,540
_1831
Position (kb)
2106
2107
2108 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2106.379 kb on + strand at 2106.379 kb on + strand at 2106.380 kb on - strand at 2106.380 kb on - strand at 2106.380 kb on - strand at 2106.380 kb on - strand at 2106.423 kb on + strand at 2106.424 kb on - strand at 2106.424 kb on - strand at 2106.451 kb on + strand at 2106.451 kb on + strand at 2106.452 kb on - strand at 2106.452 kb on - strand at 2106.452 kb on - strand at 2106.452 kb on - strand at 2106.452 kb on - strand at 2106.471 kb on + strand at 2106.471 kb on + strand at 2106.471 kb on + strand at 2106.472 kb on - strand at 2106.494 kb on + strand at 2106.494 kb on + strand at 2106.494 kb on + strand at 2106.494 kb on + strand at 2106.494 kb on + strand at 2106.495 kb on - strand at 2106.516 kb on + strand at 2106.517 kb on - strand at 2106.517 kb on - strand at 2106.517 kb on - strand at 2106.520 kb on + strand at 2106.520 kb on + strand at 2106.554 kb on - strand at 2106.667 kb on - strand, within Pf1N1B4_1830 at 2106.667 kb on - strand, within Pf1N1B4_1830 at 2106.667 kb on - strand, within Pf1N1B4_1830 at 2106.667 kb on - strand, within Pf1N1B4_1830 at 2106.782 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.786 kb on - strand, within Pf1N1B4_1830 at 2106.789 kb on - strand, within Pf1N1B4_1830 at 2106.789 kb on - strand, within Pf1N1B4_1830 at 2106.789 kb on - strand, within Pf1N1B4_1830 at 2106.789 kb on - strand, within Pf1N1B4_1830 at 2106.789 kb on - strand, within Pf1N1B4_1830 at 2106.789 kb on - strand, within Pf1N1B4_1830 at 2106.815 kb on - strand, within Pf1N1B4_1830 at 2106.815 kb on - strand, within Pf1N1B4_1830 at 2106.815 kb on - strand, within Pf1N1B4_1830 at 2106.907 kb on - strand, within Pf1N1B4_1830 at 2106.907 kb on - strand, within Pf1N1B4_1830 at 2106.907 kb on - strand, within Pf1N1B4_1830 at 2106.907 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2106.987 kb on - strand, within Pf1N1B4_1830 at 2107.008 kb on - strand, within Pf1N1B4_1830 at 2107.008 kb on - strand, within Pf1N1B4_1830 at 2107.008 kb on - strand, within Pf1N1B4_1830 at 2107.172 kb on - strand, within Pf1N1B4_1830 at 2107.172 kb on - strand, within Pf1N1B4_1830 at 2107.224 kb on - strand, within Pf1N1B4_1830 at 2107.224 kb on - strand, within Pf1N1B4_1830 at 2107.224 kb on - strand, within Pf1N1B4_1830 at 2107.224 kb on - strand, within Pf1N1B4_1830 at 2107.224 kb on - strand, within Pf1N1B4_1830 at 2107.224 kb on - strand, within Pf1N1B4_1830 at 2107.482 kb on - strand, within Pf1N1B4_1831 at 2107.482 kb on - strand, within Pf1N1B4_1831 at 2107.546 kb on + strand, within Pf1N1B4_1831 at 2107.547 kb on - strand, within Pf1N1B4_1831 at 2107.547 kb on - strand, within Pf1N1B4_1831 at 2107.547 kb on - strand, within Pf1N1B4_1831 at 2107.547 kb on - strand, within Pf1N1B4_1831 at 2107.547 kb on - strand, within Pf1N1B4_1831 at 2107.547 kb on - strand, within Pf1N1B4_1831 at 2107.547 kb on - strand, within Pf1N1B4_1831 at 2107.601 kb on - strand, within Pf1N1B4_1831 at 2107.961 kb on - strand, within Pf1N1B4_1831 at 2107.961 kb on - strand, within Pf1N1B4_1831 at 2107.961 kb on - strand, within Pf1N1B4_1831 at 2107.961 kb on - strand, within Pf1N1B4_1831 at 2108.019 kb on - strand, within Pf1N1B4_1831 at 2108.019 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.120 kb on - strand, within Pf1N1B4_1831 at 2108.297 kb on - strand, within Pf1N1B4_1831 at 2108.297 kb on - strand, within Pf1N1B4_1831 at 2108.297 kb on - strand, within Pf1N1B4_1831 at 2108.297 kb on - strand, within Pf1N1B4_1831 at 2108.297 kb on - strand, within Pf1N1B4_1831
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 2,106,379 + -0.8 2,106,379 + -0.4 2,106,380 - -1.1 2,106,380 - -0.8 2,106,380 - +0.5 2,106,380 - +1.5 2,106,423 + +1.5 2,106,424 - +0.5 2,106,424 - +0.5 2,106,451 + -0.8 2,106,451 + +1.0 2,106,452 - +0.5 2,106,452 - +0.2 2,106,452 - +1.2 2,106,452 - -1.1 2,106,452 - +1.5 2,106,471 + -2.3 2,106,471 + +0.2 2,106,471 + -1.5 2,106,472 - -1.4 2,106,494 + +0.1 2,106,494 + -1.1 2,106,494 + -0.2 2,106,494 + -1.1 2,106,494 + -2.3 2,106,495 - +1.3 2,106,516 + -0.7 2,106,517 - +1.0 2,106,517 - +0.5 2,106,517 - -1.4 2,106,520 + -2.3 2,106,520 + -2.7 2,106,554 - -1.5 2,106,667 - Pf1N1B4_1830 0.21 -1.3 2,106,667 - Pf1N1B4_1830 0.21 +0.1 2,106,667 - Pf1N1B4_1830 0.21 -1.5 2,106,667 - Pf1N1B4_1830 0.21 -1.7 2,106,782 - Pf1N1B4_1830 0.35 +0.2 2,106,786 - Pf1N1B4_1830 0.35 -0.5 2,106,786 - Pf1N1B4_1830 0.35 -1.6 2,106,786 - Pf1N1B4_1830 0.35 -0.9 2,106,786 - Pf1N1B4_1830 0.35 -2.1 2,106,786 - Pf1N1B4_1830 0.35 -3.4 2,106,786 - Pf1N1B4_1830 0.35 -2.5 2,106,786 - Pf1N1B4_1830 0.35 -1.1 2,106,786 - Pf1N1B4_1830 0.35 -2.7 2,106,786 - Pf1N1B4_1830 0.35 -1.8 2,106,786 - Pf1N1B4_1830 0.35 -1.5 2,106,786 - Pf1N1B4_1830 0.35 +0.5 2,106,786 - Pf1N1B4_1830 0.35 -2.3 2,106,789 - Pf1N1B4_1830 0.36 -0.1 2,106,789 - Pf1N1B4_1830 0.36 -1.5 2,106,789 - Pf1N1B4_1830 0.36 -1.8 2,106,789 - Pf1N1B4_1830 0.36 -0.0 2,106,789 - Pf1N1B4_1830 0.36 +3.1 2,106,789 - Pf1N1B4_1830 0.36 -0.8 2,106,815 - Pf1N1B4_1830 0.39 -2.3 2,106,815 - Pf1N1B4_1830 0.39 +0.1 2,106,815 - Pf1N1B4_1830 0.39 -1.8 2,106,907 - Pf1N1B4_1830 0.50 -0.8 2,106,907 - Pf1N1B4_1830 0.50 -2.1 2,106,907 - Pf1N1B4_1830 0.50 +0.1 2,106,907 - Pf1N1B4_1830 0.50 -1.1 2,106,987 - Pf1N1B4_1830 0.60 -2.7 2,106,987 - Pf1N1B4_1830 0.60 +0.3 2,106,987 - Pf1N1B4_1830 0.60 +1.5 2,106,987 - Pf1N1B4_1830 0.60 +1.5 2,106,987 - Pf1N1B4_1830 0.60 -0.5 2,106,987 - Pf1N1B4_1830 0.60 -0.5 2,106,987 - Pf1N1B4_1830 0.60 -0.3 2,106,987 - Pf1N1B4_1830 0.60 -2.5 2,106,987 - Pf1N1B4_1830 0.60 -2.8 2,107,008 - Pf1N1B4_1830 0.63 +1.3 2,107,008 - Pf1N1B4_1830 0.63 -1.1 2,107,008 - Pf1N1B4_1830 0.63 -1.8 2,107,172 - Pf1N1B4_1830 0.83 -0.5 2,107,172 - Pf1N1B4_1830 0.83 -0.7 2,107,224 - Pf1N1B4_1830 0.89 -0.9 2,107,224 - Pf1N1B4_1830 0.89 -1.0 2,107,224 - Pf1N1B4_1830 0.89 -1.1 2,107,224 - Pf1N1B4_1830 0.89 -0.3 2,107,224 - Pf1N1B4_1830 0.89 -0.5 2,107,224 - Pf1N1B4_1830 0.89 +0.3 2,107,482 - Pf1N1B4_1831 0.14 -0.8 2,107,482 - Pf1N1B4_1831 0.14 -2.3 2,107,546 + Pf1N1B4_1831 0.19 +0.1 2,107,547 - Pf1N1B4_1831 0.19 +1.1 2,107,547 - Pf1N1B4_1831 0.19 -0.3 2,107,547 - Pf1N1B4_1831 0.19 -1.1 2,107,547 - Pf1N1B4_1831 0.19 -0.5 2,107,547 - Pf1N1B4_1831 0.19 -0.2 2,107,547 - Pf1N1B4_1831 0.19 -1.1 2,107,547 - Pf1N1B4_1831 0.19 +0.9 2,107,601 - Pf1N1B4_1831 0.24 +0.5 2,107,961 - Pf1N1B4_1831 0.53 -0.1 2,107,961 - Pf1N1B4_1831 0.53 +0.5 2,107,961 - Pf1N1B4_1831 0.53 -1.7 2,107,961 - Pf1N1B4_1831 0.53 -0.8 2,108,019 - Pf1N1B4_1831 0.58 -1.3 2,108,019 - Pf1N1B4_1831 0.58 -0.4 2,108,120 - Pf1N1B4_1831 0.66 -1.0 2,108,120 - Pf1N1B4_1831 0.66 -1.5 2,108,120 - Pf1N1B4_1831 0.66 -1.7 2,108,120 - Pf1N1B4_1831 0.66 -0.8 2,108,120 - Pf1N1B4_1831 0.66 -2.3 2,108,120 - Pf1N1B4_1831 0.66 -2.0 2,108,120 - Pf1N1B4_1831 0.66 +0.3 2,108,120 - Pf1N1B4_1831 0.66 +0.7 2,108,120 - Pf1N1B4_1831 0.66 +0.5 2,108,120 - Pf1N1B4_1831 0.66 +1.8 2,108,120 - Pf1N1B4_1831 0.66 -0.5 2,108,120 - Pf1N1B4_1831 0.66 -0.3 2,108,120 - Pf1N1B4_1831 0.66 +1.0 2,108,120 - Pf1N1B4_1831 0.66 +0.5 2,108,120 - Pf1N1B4_1831 0.66 -0.3 2,108,120 - Pf1N1B4_1831 0.66 +0.8 2,108,120 - Pf1N1B4_1831 0.66 -0.9 2,108,120 - Pf1N1B4_1831 0.66 +0.1 2,108,120 - Pf1N1B4_1831 0.66 -0.5 2,108,120 - Pf1N1B4_1831 0.66 -0.4 2,108,120 - Pf1N1B4_1831 0.66 -2.1 2,108,120 - Pf1N1B4_1831 0.66 +1.1 2,108,120 - Pf1N1B4_1831 0.66 +0.5 2,108,120 - Pf1N1B4_1831 0.66 -0.5 2,108,120 - Pf1N1B4_1831 0.66 -0.9 2,108,120 - Pf1N1B4_1831 0.66 -2.1 2,108,120 - Pf1N1B4_1831 0.66 -1.3 2,108,120 - Pf1N1B4_1831 0.66 -1.0 2,108,120 - Pf1N1B4_1831 0.66 -0.0 2,108,120 - Pf1N1B4_1831 0.66 +0.5 2,108,120 - Pf1N1B4_1831 0.66 -1.6 2,108,120 - Pf1N1B4_1831 0.66 +1.5 2,108,297 - Pf1N1B4_1831 0.80 +1.6 2,108,297 - Pf1N1B4_1831 0.80 +3.1 2,108,297 - Pf1N1B4_1831 0.80 -1.8 2,108,297 - Pf1N1B4_1831 0.80 -0.7 2,108,297 - Pf1N1B4_1831 0.80 -0.3
Or see this region's nucleotide sequence