Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1697

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1696 and Pf1N1B4_1697 are separated by 401 nucleotidesPf1N1B4_1697 and Pf1N1B4_1698 are separated by 38 nucleotides Pf1N1B4_1696 - FIG00957011: hypothetical protein, at 1,942,661 to 1,943,425 _1696 Pf1N1B4_1697 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 1,943,827 to 1,945,068 _1697 Pf1N1B4_1698 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 1,945,107 to 1,946,300 _1698 Position (kb) 1943 1944 1945 1946Strain fitness (log2 ratio) -2 -1 0 1 2at 1942.922 kb on + strand, within Pf1N1B4_1696at 1942.922 kb on + strand, within Pf1N1B4_1696at 1942.922 kb on + strand, within Pf1N1B4_1696at 1942.923 kb on - strand, within Pf1N1B4_1696at 1942.930 kb on + strand, within Pf1N1B4_1696at 1943.129 kb on + strand, within Pf1N1B4_1696at 1943.291 kb on + strand, within Pf1N1B4_1696at 1943.291 kb on + strand, within Pf1N1B4_1696at 1943.291 kb on + strand, within Pf1N1B4_1696at 1943.291 kb on + strand, within Pf1N1B4_1696at 1943.291 kb on + strand, within Pf1N1B4_1696at 1943.292 kb on - strand, within Pf1N1B4_1696at 1943.292 kb on - strand, within Pf1N1B4_1696at 1943.292 kb on - strand, within Pf1N1B4_1696at 1943.292 kb on - strand, within Pf1N1B4_1696at 1943.292 kb on - strand, within Pf1N1B4_1696at 1943.314 kb on + strand, within Pf1N1B4_1696at 1943.370 kb on - strandat 1943.434 kb on + strandat 1943.631 kb on - strandat 1943.754 kb on + strandat 1943.754 kb on + strandat 1943.754 kb on + strandat 1943.754 kb on + strandat 1943.754 kb on + strandat 1943.755 kb on - strandat 1943.755 kb on - strandat 1943.755 kb on - strandat 1943.755 kb on - strandat 1943.755 kb on - strandat 1943.755 kb on - strandat 1943.758 kb on + strandat 1943.758 kb on + strandat 1943.758 kb on + strandat 1943.758 kb on + strandat 1943.758 kb on + strandat 1943.758 kb on + strandat 1943.759 kb on - strandat 1943.759 kb on - strandat 1944.037 kb on - strand, within Pf1N1B4_1697at 1944.337 kb on + strand, within Pf1N1B4_1697at 1944.337 kb on + strand, within Pf1N1B4_1697at 1944.337 kb on + strand, within Pf1N1B4_1697at 1944.338 kb on - strand, within Pf1N1B4_1697at 1944.417 kb on - strand, within Pf1N1B4_1697at 1944.417 kb on - strand, within Pf1N1B4_1697at 1944.417 kb on - strand, within Pf1N1B4_1697at 1944.565 kb on - strand, within Pf1N1B4_1697at 1944.709 kb on + strand, within Pf1N1B4_1697at 1944.709 kb on + strand, within Pf1N1B4_1697at 1944.709 kb on + strand, within Pf1N1B4_1697at 1944.710 kb on - strand, within Pf1N1B4_1697at 1944.710 kb on - strand, within Pf1N1B4_1697at 1944.710 kb on - strand, within Pf1N1B4_1697at 1944.710 kb on - strand, within Pf1N1B4_1697at 1944.710 kb on - strand, within Pf1N1B4_1697at 1944.710 kb on - strand, within Pf1N1B4_1697at 1944.710 kb on - strand, within Pf1N1B4_1697at 1944.710 kb on - strand, within Pf1N1B4_1697at 1944.785 kb on + strand, within Pf1N1B4_1697at 1945.006 kb on + strandat 1945.006 kb on + strandat 1945.006 kb on + strandat 1945.007 kb on - strandat 1945.025 kb on - strandat 1945.246 kb on + strand, within Pf1N1B4_1698at 1945.247 kb on - strand, within Pf1N1B4_1698at 1945.290 kb on + strand, within Pf1N1B4_1698at 1945.291 kb on - strand, within Pf1N1B4_1698at 1945.291 kb on - strand, within Pf1N1B4_1698at 1945.389 kb on + strand, within Pf1N1B4_1698at 1945.389 kb on + strand, within Pf1N1B4_1698at 1945.389 kb on + strand, within Pf1N1B4_1698at 1945.390 kb on - strand, within Pf1N1B4_1698at 1945.390 kb on - strand, within Pf1N1B4_1698at 1945.390 kb on - strand, within Pf1N1B4_1698at 1945.444 kb on - strand, within Pf1N1B4_1698at 1945.572 kb on + strand, within Pf1N1B4_1698at 1945.591 kb on - strandat 1945.591 kb on - strand, within Pf1N1B4_1698at 1945.746 kb on + strand, within Pf1N1B4_1698at 1945.746 kb on + strand, within Pf1N1B4_1698at 1945.746 kb on + strand, within Pf1N1B4_1698at 1945.746 kb on + strand, within Pf1N1B4_1698at 1945.747 kb on - strand, within Pf1N1B4_1698at 1945.747 kb on - strand, within Pf1N1B4_1698at 1945.747 kb on - strand, within Pf1N1B4_1698at 1945.747 kb on - strand, within Pf1N1B4_1698at 1945.863 kb on + strand, within Pf1N1B4_1698at 1945.863 kb on + strand, within Pf1N1B4_1698at 1945.864 kb on - strand, within Pf1N1B4_1698at 1945.864 kb on - strand, within Pf1N1B4_1698

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,942,922 + Pf1N1B4_1696 0.34 -0.5
1,942,922 + Pf1N1B4_1696 0.34 +1.0
1,942,922 + Pf1N1B4_1696 0.34 +0.5
1,942,923 - Pf1N1B4_1696 0.34 -0.1
1,942,930 + Pf1N1B4_1696 0.35 +0.3
1,943,129 + Pf1N1B4_1696 0.61 -0.9
1,943,291 + Pf1N1B4_1696 0.82 +0.3
1,943,291 + Pf1N1B4_1696 0.82 +1.5
1,943,291 + Pf1N1B4_1696 0.82 +0.8
1,943,291 + Pf1N1B4_1696 0.82 +0.0
1,943,291 + Pf1N1B4_1696 0.82 +0.5
1,943,292 - Pf1N1B4_1696 0.82 +0.6
1,943,292 - Pf1N1B4_1696 0.82 +0.1
1,943,292 - Pf1N1B4_1696 0.82 +0.5
1,943,292 - Pf1N1B4_1696 0.82 -1.7
1,943,292 - Pf1N1B4_1696 0.82 +0.6
1,943,314 + Pf1N1B4_1696 0.85 -1.1
1,943,370 - +0.5
1,943,434 + +0.6
1,943,631 - +0.5
1,943,754 + +0.5
1,943,754 + -0.5
1,943,754 + +1.5
1,943,754 + +1.2
1,943,754 + +0.5
1,943,755 - +1.5
1,943,755 - +0.7
1,943,755 - +0.3
1,943,755 - +0.7
1,943,755 - +1.0
1,943,755 - -1.1
1,943,758 + +0.5
1,943,758 + -0.7
1,943,758 + -1.0
1,943,758 + +0.5
1,943,758 + +0.0
1,943,758 + -2.5
1,943,759 - -1.1
1,943,759 - +0.5
1,944,037 - Pf1N1B4_1697 0.17 +1.8
1,944,337 + Pf1N1B4_1697 0.41 +0.5
1,944,337 + Pf1N1B4_1697 0.41 -2.1
1,944,337 + Pf1N1B4_1697 0.41 -0.5
1,944,338 - Pf1N1B4_1697 0.41 +2.0
1,944,417 - Pf1N1B4_1697 0.48 +1.5
1,944,417 - Pf1N1B4_1697 0.48 +1.2
1,944,417 - Pf1N1B4_1697 0.48 -0.1
1,944,565 - Pf1N1B4_1697 0.59 +1.2
1,944,709 + Pf1N1B4_1697 0.71 +1.0
1,944,709 + Pf1N1B4_1697 0.71 +1.0
1,944,709 + Pf1N1B4_1697 0.71 +0.5
1,944,710 - Pf1N1B4_1697 0.71 -0.5
1,944,710 - Pf1N1B4_1697 0.71 -0.5
1,944,710 - Pf1N1B4_1697 0.71 -0.1
1,944,710 - Pf1N1B4_1697 0.71 +2.6
1,944,710 - Pf1N1B4_1697 0.71 +0.3
1,944,710 - Pf1N1B4_1697 0.71 +0.5
1,944,710 - Pf1N1B4_1697 0.71 -1.5
1,944,710 - Pf1N1B4_1697 0.71 +0.7
1,944,785 + Pf1N1B4_1697 0.77 +1.0
1,945,006 + -0.5
1,945,006 + +0.1
1,945,006 + -1.1
1,945,007 - -1.5
1,945,025 - +1.2
1,945,246 + Pf1N1B4_1698 0.12 -0.5
1,945,247 - Pf1N1B4_1698 0.12 -2.1
1,945,290 + Pf1N1B4_1698 0.15 -0.4
1,945,291 - Pf1N1B4_1698 0.15 -1.9
1,945,291 - Pf1N1B4_1698 0.15 -1.1
1,945,389 + Pf1N1B4_1698 0.24 -0.8
1,945,389 + Pf1N1B4_1698 0.24 +0.0
1,945,389 + Pf1N1B4_1698 0.24 -0.8
1,945,390 - Pf1N1B4_1698 0.24 +1.0
1,945,390 - Pf1N1B4_1698 0.24 +0.5
1,945,390 - Pf1N1B4_1698 0.24 -0.5
1,945,444 - Pf1N1B4_1698 0.28 +1.0
1,945,572 + Pf1N1B4_1698 0.39 +1.2
1,945,591 - -0.5
1,945,591 - Pf1N1B4_1698 0.41 +0.7
1,945,746 + Pf1N1B4_1698 0.54 +0.5
1,945,746 + Pf1N1B4_1698 0.54 +0.3
1,945,746 + Pf1N1B4_1698 0.54 -1.1
1,945,746 + Pf1N1B4_1698 0.54 +1.0
1,945,747 - Pf1N1B4_1698 0.54 +2.5
1,945,747 - Pf1N1B4_1698 0.54 +1.0
1,945,747 - Pf1N1B4_1698 0.54 -0.3
1,945,747 - Pf1N1B4_1698 0.54 -1.5
1,945,863 + Pf1N1B4_1698 0.63 +0.0
1,945,863 + Pf1N1B4_1698 0.63 +0.5
1,945,864 - Pf1N1B4_1698 0.63 -2.3
1,945,864 - Pf1N1B4_1698 0.63 -0.8

Or see this region's nucleotide sequence