Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1632

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1631 and Pf1N1B4_1632 overlap by 4 nucleotidesPf1N1B4_1632 and Pf1N1B4_5184 are separated by 103 nucleotidesPf1N1B4_5184 and Pf1N1B4_1633 are separated by 87 nucleotidesPf1N1B4_1633 and Pf1N1B4_1634 are separated by 262 nucleotides Pf1N1B4_1631 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 1,875,743 to 1,876,810 _1631 Pf1N1B4_1632 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 1,876,807 to 1,877,079 _1632 Pf1N1B4_5184 - tRNA-Phe-GAA, at 1,877,183 to 1,877,255 _5184 Pf1N1B4_1633 - putative exported protein, at 1,877,343 to 1,877,792 _1633 Pf1N1B4_1634 - FIG074102: hypothetical protein, at 1,878,055 to 1,879,113 _1634 Position (kb) 1876 1877 1878Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1875.893 kb on + strand, within Pf1N1B4_1631at 1875.893 kb on + strand, within Pf1N1B4_1631at 1875.893 kb on + strand, within Pf1N1B4_1631at 1875.893 kb on + strand, within Pf1N1B4_1631at 1875.893 kb on + strand, within Pf1N1B4_1631at 1875.893 kb on + strand, within Pf1N1B4_1631at 1875.894 kb on - strand, within Pf1N1B4_1631at 1875.894 kb on - strand, within Pf1N1B4_1631at 1875.894 kb on - strand, within Pf1N1B4_1631at 1875.989 kb on + strandat 1875.989 kb on + strand, within Pf1N1B4_1631at 1875.989 kb on + strand, within Pf1N1B4_1631at 1875.989 kb on + strand, within Pf1N1B4_1631at 1875.989 kb on + strand, within Pf1N1B4_1631at 1875.989 kb on + strand, within Pf1N1B4_1631at 1876.255 kb on + strand, within Pf1N1B4_1631at 1876.262 kb on + strand, within Pf1N1B4_1631at 1876.262 kb on + strand, within Pf1N1B4_1631at 1876.281 kb on - strand, within Pf1N1B4_1631at 1876.281 kb on - strand, within Pf1N1B4_1631at 1876.281 kb on - strand, within Pf1N1B4_1631at 1876.642 kb on - strand, within Pf1N1B4_1631at 1876.642 kb on - strand, within Pf1N1B4_1631at 1876.712 kb on + strandat 1876.712 kb on + strandat 1876.712 kb on + strandat 1876.713 kb on - strandat 1876.713 kb on - strandat 1876.713 kb on - strandat 1876.713 kb on - strandat 1876.714 kb on + strandat 1876.715 kb on - strandat 1876.715 kb on - strandat 1876.715 kb on - strandat 1876.715 kb on - strandat 1876.834 kb on + strandat 1876.834 kb on + strandat 1876.834 kb on + strandat 1876.834 kb on + strandat 1876.834 kb on + strandat 1876.834 kb on + strandat 1876.834 kb on + strandat 1876.835 kb on - strand, within Pf1N1B4_1632at 1876.835 kb on - strand, within Pf1N1B4_1632at 1876.835 kb on - strand, within Pf1N1B4_1632at 1876.835 kb on - strand, within Pf1N1B4_1632at 1876.835 kb on - strand, within Pf1N1B4_1632at 1876.835 kb on - strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1876.999 kb on + strand, within Pf1N1B4_1632at 1877.000 kb on - strand, within Pf1N1B4_1632at 1877.000 kb on - strand, within Pf1N1B4_1632at 1877.000 kb on - strand, within Pf1N1B4_1632at 1877.042 kb on - strand, within Pf1N1B4_1632at 1877.042 kb on - strand, within Pf1N1B4_1632at 1877.060 kb on - strandat 1877.118 kb on + strandat 1877.324 kb on + strandat 1877.324 kb on + strandat 1877.325 kb on - strandat 1877.325 kb on - strandat 1877.325 kb on - strandat 1877.394 kb on + strand, within Pf1N1B4_1633at 1877.395 kb on - strand, within Pf1N1B4_1633at 1877.446 kb on + strand, within Pf1N1B4_1633at 1877.446 kb on + strand, within Pf1N1B4_1633at 1877.446 kb on + strand, within Pf1N1B4_1633at 1877.446 kb on + strand, within Pf1N1B4_1633at 1877.446 kb on + strand, within Pf1N1B4_1633at 1877.447 kb on - strand, within Pf1N1B4_1633at 1877.447 kb on - strandat 1877.447 kb on - strand, within Pf1N1B4_1633at 1877.447 kb on - strand, within Pf1N1B4_1633at 1877.447 kb on - strand, within Pf1N1B4_1633at 1877.447 kb on - strand, within Pf1N1B4_1633at 1877.447 kb on - strand, within Pf1N1B4_1633at 1877.447 kb on - strand, within Pf1N1B4_1633at 1877.466 kb on + strand, within Pf1N1B4_1633at 1877.466 kb on + strand, within Pf1N1B4_1633at 1877.467 kb on - strand, within Pf1N1B4_1633at 1877.467 kb on - strand, within Pf1N1B4_1633at 1877.467 kb on - strand, within Pf1N1B4_1633at 1877.467 kb on - strand, within Pf1N1B4_1633at 1877.467 kb on - strand, within Pf1N1B4_1633at 1877.470 kb on + strand, within Pf1N1B4_1633at 1877.470 kb on + strand, within Pf1N1B4_1633at 1877.471 kb on - strand, within Pf1N1B4_1633at 1877.471 kb on - strand, within Pf1N1B4_1633at 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.551 kb on + strandat 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.551 kb on + strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.552 kb on - strand, within Pf1N1B4_1633at 1877.593 kb on + strand, within Pf1N1B4_1633at 1877.594 kb on - strand, within Pf1N1B4_1633at 1877.594 kb on - strand, within Pf1N1B4_1633at 1877.594 kb on - strand, within Pf1N1B4_1633at 1877.594 kb on - strand, within Pf1N1B4_1633at 1877.650 kb on + strand, within Pf1N1B4_1633at 1877.650 kb on + strand, within Pf1N1B4_1633at 1877.650 kb on + strand, within Pf1N1B4_1633at 1877.650 kb on + strand, within Pf1N1B4_1633at 1877.650 kb on + strand, within Pf1N1B4_1633at 1877.650 kb on + strand, within Pf1N1B4_1633at 1877.650 kb on + strand, within Pf1N1B4_1633at 1877.650 kb on + strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.651 kb on - strand, within Pf1N1B4_1633at 1877.654 kb on + strand, within Pf1N1B4_1633at 1877.654 kb on + strand, within Pf1N1B4_1633at 1877.654 kb on + strand, within Pf1N1B4_1633at 1877.654 kb on + strand, within Pf1N1B4_1633at 1877.655 kb on - strand, within Pf1N1B4_1633at 1877.655 kb on - strand, within Pf1N1B4_1633at 1877.655 kb on - strand, within Pf1N1B4_1633at 1877.838 kb on - strandat 1877.864 kb on + strandat 1877.864 kb on + strandat 1877.901 kb on + strandat 1877.901 kb on + strandat 1877.901 kb on + strandat 1877.902 kb on - strandat 1877.902 kb on - strandat 1877.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,875,893 + Pf1N1B4_1631 0.14 -0.9
1,875,893 + Pf1N1B4_1631 0.14 +0.6
1,875,893 + Pf1N1B4_1631 0.14 +1.4
1,875,893 + Pf1N1B4_1631 0.14 -0.3
1,875,893 + Pf1N1B4_1631 0.14 +0.0
1,875,893 + Pf1N1B4_1631 0.14 -1.6
1,875,894 - Pf1N1B4_1631 0.14 -1.6
1,875,894 - Pf1N1B4_1631 0.14 +0.7
1,875,894 - Pf1N1B4_1631 0.14 -0.3
1,875,989 + +0.4
1,875,989 + Pf1N1B4_1631 0.23 +0.4
1,875,989 + Pf1N1B4_1631 0.23 -0.6
1,875,989 + Pf1N1B4_1631 0.23 -0.2
1,875,989 + Pf1N1B4_1631 0.23 +0.1
1,875,989 + Pf1N1B4_1631 0.23 +0.1
1,876,255 + Pf1N1B4_1631 0.48 -1.0
1,876,262 + Pf1N1B4_1631 0.49 +0.4
1,876,262 + Pf1N1B4_1631 0.49 +0.0
1,876,281 - Pf1N1B4_1631 0.50 +2.4
1,876,281 - Pf1N1B4_1631 0.50 +0.8
1,876,281 - Pf1N1B4_1631 0.50 +0.9
1,876,642 - Pf1N1B4_1631 0.84 -2.9
1,876,642 - Pf1N1B4_1631 0.84 -1.6
1,876,712 + -0.3
1,876,712 + +0.4
1,876,712 + +0.4
1,876,713 - -1.6
1,876,713 - -0.5
1,876,713 - -0.6
1,876,713 - -0.1
1,876,714 + +0.7
1,876,715 - -2.9
1,876,715 - -1.6
1,876,715 - -0.3
1,876,715 - +1.4
1,876,834 + -0.6
1,876,834 + -2.2
1,876,834 + -0.6
1,876,834 + +0.4
1,876,834 + +0.4
1,876,834 + +0.4
1,876,834 + -2.9
1,876,835 - Pf1N1B4_1632 0.10 +2.4
1,876,835 - Pf1N1B4_1632 0.10 -1.9
1,876,835 - Pf1N1B4_1632 0.10 -1.6
1,876,835 - Pf1N1B4_1632 0.10 -1.2
1,876,835 - Pf1N1B4_1632 0.10 -2.4
1,876,835 - Pf1N1B4_1632 0.10 -1.6
1,876,999 + Pf1N1B4_1632 0.70 +0.4
1,876,999 + Pf1N1B4_1632 0.70 -0.5
1,876,999 + Pf1N1B4_1632 0.70 -1.6
1,876,999 + Pf1N1B4_1632 0.70 +0.1
1,876,999 + Pf1N1B4_1632 0.70 -0.2
1,876,999 + Pf1N1B4_1632 0.70 -1.2
1,876,999 + Pf1N1B4_1632 0.70 -2.2
1,876,999 + Pf1N1B4_1632 0.70 -1.9
1,876,999 + Pf1N1B4_1632 0.70 -1.6
1,877,000 - Pf1N1B4_1632 0.71 -1.9
1,877,000 - Pf1N1B4_1632 0.71 +0.4
1,877,000 - Pf1N1B4_1632 0.71 -2.4
1,877,042 - Pf1N1B4_1632 0.86 +0.0
1,877,042 - Pf1N1B4_1632 0.86 -1.6
1,877,060 - -1.6
1,877,118 + +0.4
1,877,324 + +0.8
1,877,324 + -2.2
1,877,325 - +0.4
1,877,325 - -1.9
1,877,325 - +0.2
1,877,394 + Pf1N1B4_1633 0.11 -0.7
1,877,395 - Pf1N1B4_1633 0.12 -0.3
1,877,446 + Pf1N1B4_1633 0.23 +2.0
1,877,446 + Pf1N1B4_1633 0.23 +2.0
1,877,446 + Pf1N1B4_1633 0.23 +2.4
1,877,446 + Pf1N1B4_1633 0.23 -1.2
1,877,446 + Pf1N1B4_1633 0.23 +1.2
1,877,447 - Pf1N1B4_1633 0.23 -0.3
1,877,447 - -0.2
1,877,447 - Pf1N1B4_1633 0.23 +0.2
1,877,447 - Pf1N1B4_1633 0.23 +1.1
1,877,447 - Pf1N1B4_1633 0.23 -0.9
1,877,447 - Pf1N1B4_1633 0.23 -1.5
1,877,447 - Pf1N1B4_1633 0.23 -1.2
1,877,447 - Pf1N1B4_1633 0.23 -0.6
1,877,466 + Pf1N1B4_1633 0.27 +2.4
1,877,466 + Pf1N1B4_1633 0.27 -2.4
1,877,467 - Pf1N1B4_1633 0.28 -1.2
1,877,467 - Pf1N1B4_1633 0.28 +1.4
1,877,467 - Pf1N1B4_1633 0.28 +2.0
1,877,467 - Pf1N1B4_1633 0.28 -1.8
1,877,467 - Pf1N1B4_1633 0.28 +0.1
1,877,470 + Pf1N1B4_1633 0.28 -1.2
1,877,470 + Pf1N1B4_1633 0.28 +0.4
1,877,471 - Pf1N1B4_1633 0.28 -0.4
1,877,471 - Pf1N1B4_1633 0.28 +0.4
1,877,551 + Pf1N1B4_1633 0.46 -0.2
1,877,551 + Pf1N1B4_1633 0.46 +1.4
1,877,551 + Pf1N1B4_1633 0.46 -1.2
1,877,551 + Pf1N1B4_1633 0.46 +0.2
1,877,551 + +1.4
1,877,551 + Pf1N1B4_1633 0.46 -0.2
1,877,551 + Pf1N1B4_1633 0.46 -0.2
1,877,551 + Pf1N1B4_1633 0.46 +1.3
1,877,551 + Pf1N1B4_1633 0.46 +0.9
1,877,551 + Pf1N1B4_1633 0.46 +0.2
1,877,552 - Pf1N1B4_1633 0.46 +0.4
1,877,552 - Pf1N1B4_1633 0.46 +0.4
1,877,552 - Pf1N1B4_1633 0.46 +1.1
1,877,552 - Pf1N1B4_1633 0.46 +0.0
1,877,552 - Pf1N1B4_1633 0.46 +0.9
1,877,552 - Pf1N1B4_1633 0.46 -0.6
1,877,552 - Pf1N1B4_1633 0.46 +0.2
1,877,552 - Pf1N1B4_1633 0.46 -0.3
1,877,552 - Pf1N1B4_1633 0.46 +0.8
1,877,552 - Pf1N1B4_1633 0.46 +0.4
1,877,593 + Pf1N1B4_1633 0.56 -0.6
1,877,594 - Pf1N1B4_1633 0.56 -0.9
1,877,594 - Pf1N1B4_1633 0.56 +1.0
1,877,594 - Pf1N1B4_1633 0.56 -0.4
1,877,594 - Pf1N1B4_1633 0.56 +0.9
1,877,650 + Pf1N1B4_1633 0.68 +1.0
1,877,650 + Pf1N1B4_1633 0.68 -0.3
1,877,650 + Pf1N1B4_1633 0.68 +0.2
1,877,650 + Pf1N1B4_1633 0.68 +0.9
1,877,650 + Pf1N1B4_1633 0.68 -0.3
1,877,650 + Pf1N1B4_1633 0.68 +2.7
1,877,650 + Pf1N1B4_1633 0.68 +1.4
1,877,650 + Pf1N1B4_1633 0.68 -0.9
1,877,651 - Pf1N1B4_1633 0.68 +1.2
1,877,651 - Pf1N1B4_1633 0.68 -0.4
1,877,651 - Pf1N1B4_1633 0.68 +0.6
1,877,651 - Pf1N1B4_1633 0.68 +0.4
1,877,651 - Pf1N1B4_1633 0.68 +0.6
1,877,651 - Pf1N1B4_1633 0.68 -0.6
1,877,651 - Pf1N1B4_1633 0.68 -1.8
1,877,651 - Pf1N1B4_1633 0.68 -1.6
1,877,651 - Pf1N1B4_1633 0.68 -1.3
1,877,651 - Pf1N1B4_1633 0.68 +0.6
1,877,651 - Pf1N1B4_1633 0.68 +0.0
1,877,651 - Pf1N1B4_1633 0.68 -1.0
1,877,651 - Pf1N1B4_1633 0.68 +2.0
1,877,651 - Pf1N1B4_1633 0.68 +2.7
1,877,651 - Pf1N1B4_1633 0.68 +1.4
1,877,654 + Pf1N1B4_1633 0.69 -0.6
1,877,654 + Pf1N1B4_1633 0.69 +1.0
1,877,654 + Pf1N1B4_1633 0.69 +0.7
1,877,654 + Pf1N1B4_1633 0.69 +0.6
1,877,655 - Pf1N1B4_1633 0.69 -1.6
1,877,655 - Pf1N1B4_1633 0.69 -0.6
1,877,655 - Pf1N1B4_1633 0.69 -0.8
1,877,838 - -0.8
1,877,864 + +0.4
1,877,864 + +1.0
1,877,901 + +0.4
1,877,901 + +0.4
1,877,901 + -1.2
1,877,902 - -0.6
1,877,902 - -0.2
1,877,902 - +0.9

Or see this region's nucleotide sequence