Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1474 and Pf1N1B4_1475 are separated by 216 nucleotides Pf1N1B4_1475 and Pf1N1B4_1476 overlap by 6 nucleotides
Pf1N1B4_1474 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 1,689,121 to 1,692,060
_1474
Pf1N1B4_1475 - FIG00962376: hypothetical protein, at 1,692,277 to 1,692,450
_1475
Pf1N1B4_1476 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 1,692,445 to 1,695,090
_1476
Position (kb)
1692
1693 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1691.603 kb on + strand, within Pf1N1B4_1474 at 1691.603 kb on + strand, within Pf1N1B4_1474 at 1691.604 kb on - strand, within Pf1N1B4_1474 at 1691.604 kb on - strand, within Pf1N1B4_1474 at 1691.604 kb on - strand, within Pf1N1B4_1474 at 1691.604 kb on - strand, within Pf1N1B4_1474 at 1692.026 kb on - strand at 1692.026 kb on - strand at 1692.066 kb on - strand at 1692.096 kb on + strand at 1692.096 kb on + strand at 1692.097 kb on - strand at 1692.097 kb on - strand at 1692.097 kb on - strand at 1692.228 kb on + strand at 1692.252 kb on + strand at 1692.275 kb on + strand at 1692.288 kb on + strand at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.347 kb on + strand, within Pf1N1B4_1475 at 1692.348 kb on - strand, within Pf1N1B4_1475 at 1692.370 kb on + strand, within Pf1N1B4_1475 at 1692.370 kb on + strand, within Pf1N1B4_1475 at 1692.370 kb on + strand, within Pf1N1B4_1475 at 1692.370 kb on + strand, within Pf1N1B4_1475 at 1692.370 kb on + strand, within Pf1N1B4_1475 at 1692.796 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 1,691,603 + Pf1N1B4_1474 0.84 +0.3 1,691,603 + Pf1N1B4_1474 0.84 -1.5 1,691,604 - Pf1N1B4_1474 0.84 +0.8 1,691,604 - Pf1N1B4_1474 0.84 -2.0 1,691,604 - Pf1N1B4_1474 0.84 +0.3 1,691,604 - Pf1N1B4_1474 0.84 -2.0 1,692,026 - +0.1 1,692,026 - -0.0 1,692,066 - -1.7 1,692,096 + -2.7 1,692,096 + -3.8 1,692,097 - -0.8 1,692,097 - -1.2 1,692,097 - -2.0 1,692,228 + +0.3 1,692,252 + +1.3 1,692,275 + +0.3 1,692,288 + -1.2 1,692,347 + Pf1N1B4_1475 0.40 -0.7 1,692,347 + Pf1N1B4_1475 0.40 -0.2 1,692,347 + Pf1N1B4_1475 0.40 -1.2 1,692,347 + Pf1N1B4_1475 0.40 -0.1 1,692,347 + Pf1N1B4_1475 0.40 -1.4 1,692,347 + Pf1N1B4_1475 0.40 -0.4 1,692,347 + Pf1N1B4_1475 0.40 -1.2 1,692,347 + Pf1N1B4_1475 0.40 -0.8 1,692,347 + Pf1N1B4_1475 0.40 -1.7 1,692,347 + Pf1N1B4_1475 0.40 -0.9 1,692,347 + Pf1N1B4_1475 0.40 +1.3 1,692,347 + Pf1N1B4_1475 0.40 -1.8 1,692,347 + Pf1N1B4_1475 0.40 +0.0 1,692,347 + Pf1N1B4_1475 0.40 -0.7 1,692,348 - Pf1N1B4_1475 0.41 -0.2 1,692,370 + Pf1N1B4_1475 0.53 -0.4 1,692,370 + Pf1N1B4_1475 0.53 -2.5 1,692,370 + Pf1N1B4_1475 0.53 -0.2 1,692,370 + Pf1N1B4_1475 0.53 -0.7 1,692,370 + Pf1N1B4_1475 0.53 -0.7 1,692,796 + +0.8
Or see this region's nucleotide sequence