Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1433 and Pf1N1B4_1434 are separated by 129 nucleotides Pf1N1B4_1434 and Pf1N1B4_1435 are separated by 135 nucleotides
Pf1N1B4_1433 - DnaK-related protein, at 1,641,810 to 1,643,600
_1433
Pf1N1B4_1434 - Phosphoserine phosphatase (EC 3.1.3.3), at 1,643,730 to 1,644,944
_1434
Pf1N1B4_1435 - HAMP domain protein, at 1,645,080 to 1,646,606
_1435
Position (kb)
1643
1644
1645 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1642.842 kb on + strand, within Pf1N1B4_1433 at 1642.843 kb on - strand at 1642.998 kb on + strand, within Pf1N1B4_1433 at 1643.076 kb on + strand, within Pf1N1B4_1433 at 1643.076 kb on + strand, within Pf1N1B4_1433 at 1643.076 kb on + strand, within Pf1N1B4_1433 at 1643.077 kb on - strand, within Pf1N1B4_1433 at 1643.077 kb on - strand, within Pf1N1B4_1433 at 1643.149 kb on + strand, within Pf1N1B4_1433 at 1643.328 kb on + strand, within Pf1N1B4_1433 at 1643.417 kb on + strand, within Pf1N1B4_1433 at 1643.417 kb on + strand, within Pf1N1B4_1433 at 1643.417 kb on + strand, within Pf1N1B4_1433 at 1643.418 kb on - strand, within Pf1N1B4_1433 at 1643.418 kb on - strand, within Pf1N1B4_1433 at 1643.433 kb on - strand at 1643.433 kb on - strand at 1643.480 kb on + strand at 1643.492 kb on + strand at 1643.492 kb on + strand at 1643.604 kb on + strand at 1643.604 kb on + strand at 1643.604 kb on + strand at 1643.604 kb on + strand at 1643.604 kb on + strand at 1643.605 kb on - strand at 1643.605 kb on - strand at 1643.605 kb on - strand at 1643.605 kb on - strand at 1643.605 kb on - strand at 1643.612 kb on + strand at 1643.613 kb on - strand at 1643.661 kb on + strand at 1643.661 kb on + strand at 1643.661 kb on + strand at 1643.662 kb on - strand at 1643.662 kb on - strand at 1643.662 kb on - strand at 1643.662 kb on - strand at 1643.662 kb on - strand at 1643.722 kb on + strand at 1643.723 kb on - strand at 1643.768 kb on - strand at 1643.845 kb on - strand at 1643.930 kb on + strand, within Pf1N1B4_1434 at 1643.930 kb on + strand, within Pf1N1B4_1434 at 1643.930 kb on + strand, within Pf1N1B4_1434 at 1643.931 kb on - strand, within Pf1N1B4_1434 at 1644.036 kb on + strand, within Pf1N1B4_1434 at 1644.036 kb on + strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.037 kb on - strand, within Pf1N1B4_1434 at 1644.040 kb on + strand, within Pf1N1B4_1434 at 1644.040 kb on + strand, within Pf1N1B4_1434 at 1644.040 kb on + strand, within Pf1N1B4_1434 at 1644.041 kb on - strand, within Pf1N1B4_1434 at 1644.041 kb on - strand, within Pf1N1B4_1434 at 1644.079 kb on + strand, within Pf1N1B4_1434 at 1644.561 kb on - strand, within Pf1N1B4_1434 at 1644.561 kb on - strand, within Pf1N1B4_1434 at 1644.561 kb on - strand, within Pf1N1B4_1434 at 1644.581 kb on - strand, within Pf1N1B4_1434 at 1644.581 kb on - strand, within Pf1N1B4_1434 at 1644.644 kb on + strand, within Pf1N1B4_1434 at 1644.737 kb on - strand, within Pf1N1B4_1434 at 1644.770 kb on + strand, within Pf1N1B4_1434 at 1644.771 kb on - strand, within Pf1N1B4_1434
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 1,642,842 + Pf1N1B4_1433 0.58 -0.0 1,642,843 - +0.3 1,642,998 + Pf1N1B4_1433 0.66 +0.6 1,643,076 + Pf1N1B4_1433 0.71 -2.0 1,643,076 + Pf1N1B4_1433 0.71 +1.1 1,643,076 + Pf1N1B4_1433 0.71 +0.3 1,643,077 - Pf1N1B4_1433 0.71 -0.4 1,643,077 - Pf1N1B4_1433 0.71 +0.2 1,643,149 + Pf1N1B4_1433 0.75 +0.2 1,643,328 + Pf1N1B4_1433 0.85 +1.3 1,643,417 + Pf1N1B4_1433 0.90 -0.7 1,643,417 + Pf1N1B4_1433 0.90 +1.6 1,643,417 + Pf1N1B4_1433 0.90 +1.6 1,643,418 - Pf1N1B4_1433 0.90 +2.8 1,643,418 - Pf1N1B4_1433 0.90 +1.6 1,643,433 - +0.6 1,643,433 - +0.3 1,643,480 + -0.0 1,643,492 + +1.1 1,643,492 + -2.3 1,643,604 + +1.5 1,643,604 + -1.7 1,643,604 + +1.3 1,643,604 + +1.3 1,643,604 + +0.2 1,643,605 - +0.5 1,643,605 - -0.7 1,643,605 - -0.9 1,643,605 - +0.3 1,643,605 - -0.2 1,643,612 + +1.6 1,643,613 - +2.6 1,643,661 + +0.3 1,643,661 + -0.7 1,643,661 + -1.3 1,643,662 - +1.3 1,643,662 - +0.5 1,643,662 - -0.4 1,643,662 - +1.3 1,643,662 - -1.7 1,643,722 + -1.0 1,643,723 - +1.3 1,643,768 - -0.4 1,643,845 - +0.3 1,643,930 + Pf1N1B4_1434 0.16 -1.1 1,643,930 + Pf1N1B4_1434 0.16 -0.7 1,643,930 + Pf1N1B4_1434 0.16 -1.7 1,643,931 - Pf1N1B4_1434 0.17 +0.3 1,644,036 + Pf1N1B4_1434 0.25 -0.5 1,644,036 + Pf1N1B4_1434 0.25 +0.5 1,644,037 - Pf1N1B4_1434 0.25 -2.5 1,644,037 - Pf1N1B4_1434 0.25 -2.5 1,644,037 - Pf1N1B4_1434 0.25 +1.3 1,644,037 - Pf1N1B4_1434 0.25 +1.3 1,644,037 - Pf1N1B4_1434 0.25 -1.2 1,644,037 - Pf1N1B4_1434 0.25 -0.4 1,644,037 - Pf1N1B4_1434 0.25 -0.7 1,644,037 - Pf1N1B4_1434 0.25 -0.8 1,644,037 - Pf1N1B4_1434 0.25 +1.5 1,644,037 - Pf1N1B4_1434 0.25 -0.7 1,644,037 - Pf1N1B4_1434 0.25 +0.3 1,644,037 - Pf1N1B4_1434 0.25 +0.3 1,644,037 - Pf1N1B4_1434 0.25 +0.3 1,644,040 + Pf1N1B4_1434 0.26 -0.7 1,644,040 + Pf1N1B4_1434 0.26 -1.3 1,644,040 + Pf1N1B4_1434 0.26 -2.3 1,644,041 - Pf1N1B4_1434 0.26 +1.9 1,644,041 - Pf1N1B4_1434 0.26 +1.3 1,644,079 + Pf1N1B4_1434 0.29 -1.8 1,644,561 - Pf1N1B4_1434 0.68 +0.3 1,644,561 - Pf1N1B4_1434 0.68 -1.0 1,644,561 - Pf1N1B4_1434 0.68 -2.5 1,644,581 - Pf1N1B4_1434 0.70 -0.5 1,644,581 - Pf1N1B4_1434 0.70 -1.3 1,644,644 + Pf1N1B4_1434 0.75 +0.3 1,644,737 - Pf1N1B4_1434 0.83 -0.7 1,644,770 + Pf1N1B4_1434 0.86 -1.0 1,644,771 - Pf1N1B4_1434 0.86 +0.2
Or see this region's nucleotide sequence