Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1399

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1397 and Pf1N1B4_1398 are separated by 123 nucleotidesPf1N1B4_1398 and Pf1N1B4_1399 are separated by 19 nucleotidesPf1N1B4_1399 and Pf1N1B4_1400 are separated by 36 nucleotidesPf1N1B4_1400 and Pf1N1B4_1401 are separated by 28 nucleotides Pf1N1B4_1397 - Replicative DNA helicase (EC 3.6.1.-), at 1,601,677 to 1,603,071 _1397 Pf1N1B4_1398 - LSU ribosomal protein L9p, at 1,603,195 to 1,603,641 _1398 Pf1N1B4_1399 - FIG003573: hypothetical protein, at 1,603,661 to 1,604,554 _1399 Pf1N1B4_1400 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 1,604,591 to 1,604,821 _1400 Pf1N1B4_1401 - SSU ribosomal protein S6p, at 1,604,850 to 1,605,272 _1401 Position (kb) 1603 1604 1605Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1603.093 kb on - strandat 1603.205 kb on - strandat 1603.759 kb on - strandat 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.875 kb on - strand, within Pf1N1B4_1399at 1603.914 kb on - strand, within Pf1N1B4_1399at 1603.914 kb on - strand, within Pf1N1B4_1399at 1603.914 kb on - strand, within Pf1N1B4_1399at 1603.919 kb on - strand, within Pf1N1B4_1399at 1603.959 kb on - strand, within Pf1N1B4_1399at 1604.011 kb on - strand, within Pf1N1B4_1399at 1604.149 kb on - strand, within Pf1N1B4_1399at 1604.362 kb on - strand, within Pf1N1B4_1399at 1605.433 kb on + strandat 1605.434 kb on - strandat 1605.434 kb on - strandat 1605.463 kb on + strandat 1605.463 kb on + strandat 1605.463 kb on + strandat 1605.463 kb on + strandat 1605.463 kb on + strandat 1605.464 kb on - strandat 1605.464 kb on - strandat 1605.464 kb on - strandat 1605.464 kb on - strandat 1605.464 kb on - strandat 1605.535 kb on + strandat 1605.535 kb on + strandat 1605.536 kb on - strandat 1605.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,603,093 - -0.3
1,603,205 - +0.9
1,603,759 - +0.7
1,603,792 - Pf1N1B4_1399 0.15 -0.1
1,603,792 - Pf1N1B4_1399 0.15 -0.7
1,603,792 - Pf1N1B4_1399 0.15 -1.7
1,603,792 - Pf1N1B4_1399 0.15 -2.3
1,603,792 - Pf1N1B4_1399 0.15 -0.3
1,603,792 - Pf1N1B4_1399 0.15 +0.9
1,603,792 - Pf1N1B4_1399 0.15 -2.3
1,603,792 - Pf1N1B4_1399 0.15 +0.3
1,603,875 - Pf1N1B4_1399 0.24 -0.7
1,603,914 - Pf1N1B4_1399 0.28 -2.3
1,603,914 - Pf1N1B4_1399 0.28 +0.3
1,603,914 - Pf1N1B4_1399 0.28 +0.0
1,603,919 - Pf1N1B4_1399 0.29 +0.3
1,603,959 - Pf1N1B4_1399 0.33 -1.7
1,604,011 - Pf1N1B4_1399 0.39 -1.3
1,604,149 - Pf1N1B4_1399 0.55 -2.5
1,604,362 - Pf1N1B4_1399 0.78 -0.9
1,605,433 + +0.1
1,605,434 - +0.7
1,605,434 - -0.2
1,605,463 + -1.9
1,605,463 + -0.7
1,605,463 + +0.7
1,605,463 + +3.3
1,605,463 + -0.7
1,605,464 - -1.0
1,605,464 - +1.3
1,605,464 - +0.3
1,605,464 - +0.6
1,605,464 - +0.3
1,605,535 + +1.3
1,605,535 + -0.9
1,605,536 - +0.4
1,605,536 - -0.3

Or see this region's nucleotide sequence