Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22040

Experiment: Temperature shift 10_to_21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 10_to_21
4,959,968	+		PFLU_RS22035	0.38	-2.7
4,959,968	+		PFLU_RS22035	0.38	-1.2
4,959,968	+		PFLU_RS22035	0.38	-2.1
4,959,968	+		PFLU_RS22035	0.38	+0.6
4,959,968	+		PFLU_RS22035	0.38	+0.6
4,959,968	+		PFLU_RS22035	0.38	-1.3
4,959,969	-		PFLU_RS22035	0.38	+0.3
4,959,969	-		PFLU_RS22035	0.38	-0.3
4,959,969	-		PFLU_RS22035	0.38	-0.9
4,959,969	-		PFLU_RS22035	0.38	+0.4
4,959,969	-		PFLU_RS22035	0.38	-0.6
4,959,969	-		PFLU_RS22035	0.38	-1.7
4,959,969	-		PFLU_RS22035	0.38	+0.4
4,960,005	-		PFLU_RS22035	0.40	-1.2
4,960,042	+		PFLU_RS22035	0.43	-0.3
4,960,042	+		PFLU_RS22035	0.43	-0.3
4,960,042	+		PFLU_RS22035	0.43	-0.7
4,960,042	+		PFLU_RS22035	0.43	+0.5
4,960,042	+		PFLU_RS22035	0.43	+0.4
4,960,042	+		PFLU_RS22035	0.43	-0.4
4,960,042	+		PFLU_RS22035	0.43	+0.7
4,960,042	+		PFLU_RS22035	0.43	+1.0
4,960,042	+		PFLU_RS22035	0.43	+0.3
4,960,043	-		PFLU_RS22035	0.43	-1.3
4,960,043	-		PFLU_RS22035	0.43	+0.2
4,960,043	-		PFLU_RS22035	0.43	-0.6
4,960,043	-		PFLU_RS22035	0.43	+0.7
4,960,043	-		PFLU_RS22035	0.43	+0.1
4,960,043	-		PFLU_RS22035	0.43	+0.0
4,960,043	-		PFLU_RS22035	0.43	+1.0
4,960,043	-		PFLU_RS22035	0.43	-1.6
4,960,043	-		PFLU_RS22035	0.43	-0.9
4,960,043	-		PFLU_RS22035	0.43	+0.3
4,960,043	-		PFLU_RS22035	0.43	-0.6
4,960,124	+		PFLU_RS22035	0.50	-0.5
4,960,124	+		PFLU_RS22035	0.50	+0.1
4,960,124	+		PFLU_RS22035	0.50	-1.2
4,960,124	+		PFLU_RS22035	0.50	-0.1
4,960,124	+		PFLU_RS22035	0.50	-0.3
4,960,124	+		PFLU_RS22035	0.50	+0.3
4,960,125	-		PFLU_RS22035	0.50	+0.3
4,960,125	-		PFLU_RS22035	0.50	-0.8
4,960,125	-		PFLU_RS22035	0.50	-0.9
4,960,125	-		PFLU_RS22035	0.50	-1.2
4,960,125	-		PFLU_RS22035	0.50	-0.8
4,960,125	-		PFLU_RS22035	0.50	-0.3
4,960,125	-		PFLU_RS22035	0.50	-0.1
4,960,125	-		PFLU_RS22035	0.50	+4.1
4,960,125	-		PFLU_RS22035	0.50	+0.6
4,960,343	+		PFLU_RS22035	0.66	+1.1
4,960,343	+		PFLU_RS22035	0.66	+0.9
4,960,343	+		PFLU_RS22035	0.66	-0.7
4,960,343	+		PFLU_RS22035	0.66	-0.6
4,960,343	+		PFLU_RS22035	0.66	+0.4
4,960,343	+		PFLU_RS22035	0.66	-1.6
4,960,343	+		PFLU_RS22035	0.66	+0.5
4,960,343	+		PFLU_RS22035	0.66	-3.0
4,960,344	-		PFLU_RS22035	0.66	-0.5
4,960,344	-		PFLU_RS22035	0.66	-0.4
4,960,344	-		PFLU_RS22035	0.66	-0.4
4,960,344	-		PFLU_RS22035	0.66	+0.5
4,960,344	-		PFLU_RS22035	0.66	+1.8
4,960,344	-		PFLU_RS22035	0.66	+0.5
4,960,344	-		PFLU_RS22035	0.66	-0.1
4,960,344	-		PFLU_RS22035	0.66	+0.4
4,960,373	+		PFLU_RS22035	0.68	+2.3
4,960,373	+		PFLU_RS22035	0.68	+0.9
4,960,373	+		PFLU_RS22035	0.68	-0.5
4,960,373	+		PFLU_RS22035	0.68	+0.1
4,960,373	+		PFLU_RS22035	0.68	-0.3
4,960,373	+		PFLU_RS22035	0.68	-0.1
4,960,373	+		PFLU_RS22035	0.68	-0.3
4,960,373	+		PFLU_RS22035	0.68	+0.3
4,960,373	+		PFLU_RS22035	0.68	+1.4
4,960,373	+		PFLU_RS22035	0.68	+0.3
4,960,373	+		PFLU_RS22035	0.68	-0.8
4,960,373	+		PFLU_RS22035	0.68	-0.6
4,960,373	+		PFLU_RS22035	0.68	+0.8
4,960,373	+		PFLU_RS22035	0.68	+1.1
4,960,373	+		PFLU_RS22035	0.68	-0.1
4,960,373	+		PFLU_RS22035	0.68	+1.6
4,960,373	+		PFLU_RS22035	0.68	+0.3
4,960,373	+		PFLU_RS22035	0.68	+0.9
4,960,373	+		PFLU_RS22035	0.68	+1.6
4,960,373	+		PFLU_RS22035	0.68	+0.7
4,960,374	-		PFLU_RS22035	0.69	-0.6
4,960,374	-		PFLU_RS22035	0.69	+1.0
4,960,374	-		PFLU_RS22035	0.69	-0.1
4,960,374	-		PFLU_RS22035	0.69	-1.4
4,960,374	-		PFLU_RS22035	0.69	-0.5
4,960,374	-		PFLU_RS22035	0.69	+0.4
4,960,374	-		PFLU_RS22035	0.69	-0.1
4,960,374	-		PFLU_RS22035	0.69	-0.2
4,960,374	-		PFLU_RS22035	0.69	+0.3
4,960,374	-		PFLU_RS22035	0.69	+0.6
4,960,374	-		PFLU_RS22035	0.69	-0.1
4,960,391	+		PFLU_RS22035	0.70	+0.2
4,960,391	+		PFLU_RS22035	0.70	-1.4
4,960,391	+		PFLU_RS22035	0.70	-0.0
4,960,391	+		PFLU_RS22035	0.70	-1.4
4,960,392	-		PFLU_RS22035	0.70	-0.1
4,960,392	-		PFLU_RS22035	0.70	-0.3
4,960,392	-		PFLU_RS22035	0.70	-0.4
4,960,392	-		PFLU_RS22035	0.70	+0.4
4,960,394	+		PFLU_RS22035	0.70	+0.9
4,960,395	-		PFLU_RS22035	0.70	+0.8
4,960,395	-		PFLU_RS22035	0.70	+0.7
4,960,407	+		PFLU_RS22035	0.71	+0.6
4,960,407	+		PFLU_RS22035	0.71	-1.9
4,960,407	+		PFLU_RS22035	0.71	-0.1
4,960,407	+		PFLU_RS22035	0.71	+1.1
4,960,407	+		PFLU_RS22035	0.71	+0.7
4,960,407	+		PFLU_RS22035	0.71	-1.4
4,960,407	+		PFLU_RS22035	0.71	-1.6
4,960,408	-		PFLU_RS22035	0.71	-1.4
4,960,408	-		PFLU_RS22035	0.71	+0.7
4,960,408	-		PFLU_RS22035	0.71	-0.3
4,960,408	-		PFLU_RS22035	0.71	-2.1
4,960,408	-		PFLU_RS22035	0.71	+0.1
4,960,408	-		PFLU_RS22035	0.71	+2.4
4,960,408	-		PFLU_RS22035	0.71	+0.8
4,960,408	-		PFLU_RS22035	0.71	+1.5
4,960,473	+		PFLU_RS22035	0.76	-0.4
4,960,474	-		PFLU_RS22035	0.76	+0.6
4,960,483	+		PFLU_RS22035	0.77	-1.2
4,960,595	+		PFLU_RS22035	0.85	+1.9
4,960,595	+		PFLU_RS22035	0.85	-1.3
4,960,595	+		PFLU_RS22035	0.85	-0.2
4,960,595	+		PFLU_RS22035	0.85	-0.1
4,960,595	+		PFLU_RS22035	0.85	-1.8
4,960,595	+		PFLU_RS22035	0.85	-0.1
4,960,595	+		PFLU_RS22035	0.85	+0.6
4,960,595	+		PFLU_RS22035	0.85	+0.3
4,960,595	+		PFLU_RS22035	0.85	-0.2
4,960,595	+		PFLU_RS22035	0.85	-1.3
4,960,596	-		PFLU_RS22035	0.85	+1.3
4,960,596	-		PFLU_RS22035	0.85	-0.1
4,960,596	-		PFLU_RS22035	0.85	+0.5
4,960,596	-		PFLU_RS22035	0.85	-0.0
4,960,701	+				+0.4
4,960,701	+				-1.1
4,960,701	+				-0.2
4,960,756	+				-0.5
4,960,756	+				+0.0
4,960,756	+				+0.3
4,960,757	-				+0.2
4,960,757	-				+0.8
4,960,757	-				+2.3
4,960,757	-				+1.7
4,960,757	-				-0.4
4,960,757	-				+1.3
4,960,757	-				+0.3
4,960,781	-				+1.7
4,960,784	+				+0.5
4,960,784	+				+0.3
4,960,784	+				+1.0
4,960,784	+				+0.3
4,960,784	+				-1.1
4,960,785	-				+0.0
4,960,785	-				-0.9
4,960,785	-				+0.2
4,960,785	-				+1.3
4,960,785	-				+0.7
4,960,825	+				-0.6
4,960,848	+				+0.9
4,960,849	-				+0.1
4,960,849	-				-1.1
4,960,849	-				-1.1
4,960,849	-				+0.6
4,960,950	-				-0.4
4,960,950	-				+0.3
4,960,961	+				+0.1
4,961,002	+				-0.2
4,961,002	+				-2.3
4,961,002	+				-0.2
4,961,002	+				-0.3
4,961,003	-				-0.6
4,961,017	+		PFLU_RS22040	0.12	+0.8
4,961,017	+		PFLU_RS22040	0.12	+1.8
4,961,018	-		PFLU_RS22040	0.12	-1.3
4,961,049	-		PFLU_RS22040	0.18	+1.1
4,961,092	+		PFLU_RS22040	0.26	-0.2
4,961,092	+		PFLU_RS22040	0.26	-1.1
4,961,092	+		PFLU_RS22040	0.26	+0.8
4,961,092	+		PFLU_RS22040	0.26	-1.0
4,961,092	+		PFLU_RS22040	0.26	+0.9
4,961,092	+		PFLU_RS22040	0.26	+0.8
4,961,092	+		PFLU_RS22040	0.26	+0.8
4,961,093	-		PFLU_RS22040	0.26	-0.6
4,961,093	-		PFLU_RS22040	0.26	+0.5
4,961,093	-		PFLU_RS22040	0.26	+0.1
4,961,093	-		PFLU_RS22040	0.26	-0.3
4,961,093	-		PFLU_RS22040	0.26	+1.3
4,961,093	-		PFLU_RS22040	0.26	-0.7
4,961,093	-		PFLU_RS22040	0.26	+0.7
4,961,093	-		PFLU_RS22040	0.26	+0.8
4,961,093	-		PFLU_RS22040	0.26	-0.6
4,961,377	+		PFLU_RS22040	0.79	+1.8
4,961,377	+		PFLU_RS22040	0.79	-0.1
4,961,377	+		PFLU_RS22040	0.79	-0.7
4,961,377	+		PFLU_RS22040	0.79	-0.7
4,961,377	+		PFLU_RS22040	0.79	+1.4
4,961,378	-		PFLU_RS22040	0.79	-0.7
4,961,378	-		PFLU_RS22040	0.79	+1.5
4,961,378	-		PFLU_RS22040	0.79	+0.3
4,961,378	-		PFLU_RS22040	0.79	+0.6
4,961,393	+		PFLU_RS22040	0.81	+0.7
4,961,393	+		PFLU_RS22040	0.81	-0.3
4,961,393	+		PFLU_RS22040	0.81	+1.7
4,961,394	-		PFLU_RS22040	0.82	+0.7
4,961,394	-		PFLU_RS22040	0.82	+0.8
4,961,394	-		PFLU_RS22040	0.82	-0.9
4,961,465	+				+0.1
4,961,465	+				+1.3
4,961,466	-				-0.1
4,961,466	-				-0.7
4,961,606	+				+0.8
4,961,607	-				+0.2
4,961,657	+				+0.8
4,961,710	+		PFLU_RS22045	0.12	-0.2
4,961,710	+		PFLU_RS22045	0.12	-0.6
4,961,710	+		PFLU_RS22045	0.12	-1.1
4,961,711	-		PFLU_RS22045	0.12	-1.4
4,961,711	-		PFLU_RS22045	0.12	-0.3
4,961,711	-		PFLU_RS22045	0.12	-0.4
4,961,711	-		PFLU_RS22045	0.12	-0.7
4,961,711	-		PFLU_RS22045	0.12	-0.7
4,961,711	-		PFLU_RS22045	0.12	-3.0
4,961,711	-		PFLU_RS22045	0.12	+0.1
4,961,711	-		PFLU_RS22045	0.12	-1.9
4,961,768	+		PFLU_RS22045	0.21	+0.7
4,961,788	+		PFLU_RS22045	0.24	-0.3
4,961,788	+		PFLU_RS22045	0.24	-0.3
4,961,788	+		PFLU_RS22045	0.24	+0.3
4,961,788	+		PFLU_RS22045	0.24	+0.6
4,961,788	+		PFLU_RS22045	0.24	-0.6
4,961,788	+		PFLU_RS22045	0.24	-0.9
4,961,788	+		PFLU_RS22045	0.24	-0.6
4,961,789	-		PFLU_RS22045	0.24	-0.7
4,961,789	-		PFLU_RS22045	0.24	-0.4
4,961,789	-		PFLU_RS22045	0.24	-0.6
4,961,789	-		PFLU_RS22045	0.24	-0.7
4,961,789	-		PFLU_RS22045	0.24	-1.2
4,961,789	-		PFLU_RS22045	0.24	-1.7
4,961,789	-		PFLU_RS22045	0.24	-1.4
4,961,789	-		PFLU_RS22045	0.24	-1.5
4,961,789	-		PFLU_RS22045	0.24	-0.7
4,961,789	-		PFLU_RS22045	0.24	-0.6
4,961,789	-		PFLU_RS22045	0.24	-0.9
4,961,789	-		PFLU_RS22045	0.24	-0.2
4,961,792	+		PFLU_RS22045	0.25	-1.0
4,961,825	+		PFLU_RS22045	0.30	+0.7
4,961,825	+		PFLU_RS22045	0.30	-0.3
4,961,826	-		PFLU_RS22045	0.30	-1.5
4,961,826	-		PFLU_RS22045	0.30	-0.2
4,961,903	+		PFLU_RS22045	0.42	-0.4
4,961,904	-		PFLU_RS22045	0.42	-2.2
4,961,944	+		PFLU_RS22045	0.49	-1.6
4,961,944	+		PFLU_RS22045	0.49	-0.1
4,961,944	+		PFLU_RS22045	0.49	-1.9
4,961,984	+		PFLU_RS22045	0.55	-1.9
4,961,984	+		PFLU_RS22045	0.55	+1.0
4,961,984	+		PFLU_RS22045	0.55	-1.3
4,961,984	+		PFLU_RS22045	0.55	+2.1
4,961,985	-		PFLU_RS22045	0.55	-1.6
4,961,985	-		PFLU_RS22045	0.55	-1.1
4,962,061	+		PFLU_RS22045	0.67	-0.7
4,962,061	+		PFLU_RS22045	0.67	-1.3
4,962,062	-		PFLU_RS22045	0.67	-1.0
4,962,062	-		PFLU_RS22045	0.67	-1.4
4,962,119	-		PFLU_RS22045	0.77	-1.0
4,962,119	-		PFLU_RS22045	0.77	+0.0
4,962,225	-				-0.8
4,962,261	+				-1.6
4,962,261	+				-1.3
4,962,261	+				-0.2
4,962,261	+				-1.7
4,962,262	-				-2.7
4,962,262	-				-1.7
4,962,286	-				+0.5
4,962,289	+				-1.1
4,962,289	+				-1.3
4,962,289	+				-1.7
4,962,289	+				-0.7
4,962,289	+				+0.7
4,962,289	+				-1.1
4,962,289	+				+1.0
4,962,289	+				-2.2
4,962,289	+				-0.3
4,962,289	+				-0.2
4,962,289	+				-1.7
4,962,289	+				+0.6
4,962,289	+				-1.7
4,962,289	+				-0.3
4,962,290	-				+1.3
4,962,290	-				-0.1
4,962,290	-				-0.2
4,962,290	-				-0.6
4,962,290	-				+0.3
4,962,290	-				+0.7
4,962,290	-				-0.1
4,962,290	-				+0.1
4,962,290	-				-0.4
4,962,290	-				+0.5
4,962,290	-				+1.6
4,962,290	-				+0.4
4,962,290	-				+0.9
4,962,290	-				-0.5
4,962,314	-				+0.5
4,962,345	+				-1.0
4,962,345	+				+1.0
4,962,345	+				+0.2
4,962,345	+				-1.6
4,962,346	-				-1.3
4,962,346	-				+1.7
4,962,346	-				+0.2
4,962,366	+				+0.3
4,962,366	+				+0.5
4,962,367	-				+1.0
4,962,367	-				+1.1
4,962,367	-				-1.1
4,962,375	+				+1.9
4,962,376	-				+1.5
4,962,376	-				+1.4
4,962,376	-				+0.8
4,962,382	+				+0.2
4,962,382	+				-0.8
4,962,392	+				-0.1
4,962,393	-				-0.2
4,962,393	-				-0.8
4,962,477	+				-0.2