Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14795

Experiment: Temperature shift 10_to_21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 10_to_21
3,308,667	+		PFLU_RS14790	0.42	+0.2
3,308,668	-		PFLU_RS14790	0.42	+2.7
3,308,668	-		PFLU_RS14790	0.42	+0.2
3,308,668	-		PFLU_RS14790	0.42	-2.8
3,308,854	-		PFLU_RS14790	0.68	-0.5
3,308,854	-		PFLU_RS14790	0.68	-1.2
3,308,854	-		PFLU_RS14790	0.68	+0.4
3,308,966	+		PFLU_RS14790	0.84	+0.2
3,309,052	+				-3.5
3,309,052	+				+0.2
3,309,052	+				-0.8
3,309,052	+				+2.3
3,309,053	-				-1.1
3,309,053	-				+0.8
3,309,212	+				-2.9
3,309,215	+				+0.9
3,309,216	-				-0.3
3,309,237	+				-0.4
3,309,238	-				-0.5
3,309,248	-				+0.4
3,309,280	+		PFLU_RS31630	0.11	+0.5
3,309,280	+		PFLU_RS31630	0.11	-2.2
3,309,422	+		PFLU_RS31630	0.71	-0.9
3,309,422	+		PFLU_RS31630	0.71	-0.6
3,309,423	-		PFLU_RS31630	0.71	+0.3
3,309,423	-		PFLU_RS31630	0.71	-0.1
3,309,481	+				-1.1
3,309,517	+				-2.5
3,309,517	+				-1.9
3,309,517	+				-0.3
3,309,517	+				+0.9
3,309,517	+				+1.3
3,309,518	-				+0.5
3,309,518	-				-0.3
3,309,518	-				-0.1
3,309,518	-				-1.1
3,309,518	-				+1.0
3,309,545	+				-0.7
3,309,564	+				-0.5
3,309,565	-				+1.0
3,309,609	+				-0.8
3,309,609	+				+2.3
3,309,609	+				+0.1
3,309,610	-				-0.6
3,309,613	+				-0.4
3,309,613	+				-1.2
3,309,613	+				-2.1
3,309,613	+				-0.5
3,309,614	-				-0.1
3,309,614	-				+0.2
3,309,619	+				+0.9
3,309,619	+				-1.5
3,309,619	+				+0.2
3,309,619	+				+0.1
3,309,619	+				-1.0
3,309,619	+				-0.2
3,309,619	+				-2.5
3,309,619	+				-0.6
3,309,619	+				+1.3
3,309,619	+				-1.6
3,309,619	+				+0.5
3,309,619	+				+0.5
3,309,619	+				+0.7
3,309,620	-				+0.0
3,309,620	-				+0.2
3,309,620	-				-1.1
3,309,620	-				+0.9
3,309,620	-				+0.1
3,309,620	-				+0.7
3,309,620	-				+0.3
3,309,620	-				-1.1
3,309,620	-				-1.5
3,309,620	-				+1.8
3,309,620	-				-0.3
3,309,620	-				+0.9
3,309,620	-				+0.6
3,309,620	-				-2.1
3,309,620	-				-0.7
3,309,620	-				+0.7
3,309,620	-				+0.6
3,309,620	-				+0.4
3,309,623	+				+0.6
3,309,623	+				+1.2
3,309,624	-				+0.7
3,309,624	-				-2.0
3,309,624	-				+0.4
3,309,624	-				+0.0
3,309,624	-				-1.6
3,309,624	-				+1.3
3,309,624	-				-0.2
3,309,624	-				-1.8
3,309,697	+				+0.6
3,309,697	+				+0.7
3,309,697	+				-0.6
3,309,697	+				+0.1
3,309,697	+				+0.2
3,309,698	-				-1.1
3,309,698	-				-1.0
3,309,698	-				+0.5
3,309,769	+				+0.1
3,309,770	-				-0.2
3,309,874	+		PFLU_RS14795	0.13	-1.5
3,309,874	+		PFLU_RS14795	0.13	+0.5
3,309,874	+		PFLU_RS14795	0.13	-0.6
3,309,874	+		PFLU_RS14795	0.13	+0.7
3,309,874	+		PFLU_RS14795	0.13	+1.5
3,309,874	+		PFLU_RS14795	0.13	-2.8
3,309,874	+		PFLU_RS14795	0.13	-0.7
3,309,874	+		PFLU_RS14795	0.13	+0.2
3,309,874	+		PFLU_RS14795	0.13	-1.5
3,309,874	+		PFLU_RS14795	0.13	+0.7
3,309,874	+		PFLU_RS14795	0.13	-1.1
3,309,874	+		PFLU_RS14795	0.13	+0.4
3,309,874	+		PFLU_RS14795	0.13	-1.1
3,309,874	+		PFLU_RS14795	0.13	-0.2
3,309,874	+		PFLU_RS14795	0.13	-0.1
3,309,874	+		PFLU_RS14795	0.13	-0.5
3,309,874	+		PFLU_RS14795	0.13	-0.8
3,309,874	+		PFLU_RS14795	0.13	-1.3
3,309,874	+		PFLU_RS14795	0.13	+0.7
3,309,874	+		PFLU_RS14795	0.13	-0.2
3,309,875	-		PFLU_RS14795	0.13	-1.5
3,309,875	-		PFLU_RS14795	0.13	-0.7
3,309,875	-		PFLU_RS14795	0.13	-0.2
3,309,875	-		PFLU_RS14795	0.13	+0.3
3,309,875	-		PFLU_RS14795	0.13	+1.1
3,309,875	-		PFLU_RS14795	0.13	+0.2
3,309,875	-		PFLU_RS14795	0.13	+0.3
3,309,875	-		PFLU_RS14795	0.13	+0.2
3,309,875	-		PFLU_RS14795	0.13	+0.9
3,309,875	-		PFLU_RS14795	0.13	+2.8
3,309,960	-		PFLU_RS14795	0.18	+3.1
3,309,977	-		PFLU_RS14795	0.20	+1.0
3,310,010	+		PFLU_RS14795	0.22	+0.1
3,310,011	-		PFLU_RS14795	0.22	-0.6
3,310,011	-		PFLU_RS14795	0.22	-1.3
3,310,011	-		PFLU_RS14795	0.22	+0.5
3,310,011	-		PFLU_RS14795	0.22	-0.0
3,310,011	-		PFLU_RS14795	0.22	+0.1
3,310,011	-		PFLU_RS14795	0.22	+0.4
3,310,011	-		PFLU_RS14795	0.22	-0.4
3,310,012	+		PFLU_RS14795	0.22	+0.5
3,310,012	+		PFLU_RS14795	0.22	+1.0
3,310,012	+		PFLU_RS14795	0.22	-0.2
3,310,012	+		PFLU_RS14795	0.22	+0.3
3,310,012	+		PFLU_RS14795	0.22	+0.5
3,310,013	-		PFLU_RS14795	0.22	-0.8
3,310,013	-		PFLU_RS14795	0.22	+0.5
3,310,013	-		PFLU_RS14795	0.22	-0.2
3,310,013	-		PFLU_RS14795	0.22	+2.1
3,310,013	-		PFLU_RS14795	0.22	-1.0
3,310,013	-		PFLU_RS14795	0.22	+0.4
3,310,033	-		PFLU_RS14795	0.23	+0.0
3,310,211	+		PFLU_RS14795	0.34	-0.1
3,310,212	-		PFLU_RS14795	0.34	-0.1
3,310,212	-		PFLU_RS14795	0.34	+2.5
3,310,312	+		PFLU_RS14795	0.40	-0.1
3,310,312	+		PFLU_RS14795	0.40	+0.5
3,310,312	+		PFLU_RS14795	0.40	-0.7
3,310,312	+		PFLU_RS14795	0.40	-0.9
3,310,312	+		PFLU_RS14795	0.40	+0.7
3,310,312	+		PFLU_RS14795	0.40	+0.7
3,310,313	-		PFLU_RS14795	0.40	+1.3
3,310,313	-		PFLU_RS14795	0.40	-0.3
3,310,313	-		PFLU_RS14795	0.40	-0.1
3,310,313	-		PFLU_RS14795	0.40	+0.4
3,310,313	-		PFLU_RS14795	0.40	-1.7
3,310,313	-		PFLU_RS14795	0.40	+0.5
3,310,378	+		PFLU_RS14795	0.44	+0.2
3,310,378	+		PFLU_RS14795	0.44	-0.7
3,310,379	-		PFLU_RS14795	0.44	+1.3
3,310,379	-		PFLU_RS14795	0.44	+0.8
3,310,471	+		PFLU_RS14795	0.50	-1.1
3,310,471	+		PFLU_RS14795	0.50	-0.2
3,310,471	+		PFLU_RS14795	0.50	-1.5
3,310,472	-		PFLU_RS14795	0.50	-0.5
3,310,472	-		PFLU_RS14795	0.50	-0.5
3,310,495	+		PFLU_RS14795	0.51	+0.5
3,310,495	+		PFLU_RS14795	0.51	-0.3
3,310,495	+		PFLU_RS14795	0.51	+0.2
3,310,495	+		PFLU_RS14795	0.51	+0.2
3,310,495	+		PFLU_RS14795	0.51	-0.3
3,310,496	-		PFLU_RS14795	0.52	-0.2
3,310,496	-		PFLU_RS14795	0.52	+0.0
3,310,496	-		PFLU_RS14795	0.52	+0.3
3,310,496	-		PFLU_RS14795	0.52	-0.1
3,310,496	-		PFLU_RS14795	0.52	+0.1
3,310,496	-		PFLU_RS14795	0.52	+0.2
3,310,496	-		PFLU_RS14795	0.52	+1.3
3,310,498	+		PFLU_RS14795	0.52	-1.2
3,310,498	+		PFLU_RS14795	0.52	+0.9
3,310,498	+		PFLU_RS14795	0.52	-0.1
3,310,498	+		PFLU_RS14795	0.52	+0.2
3,310,499	-		PFLU_RS14795	0.52	+1.3
3,310,499	-		PFLU_RS14795	0.52	+0.2
3,310,499	-		PFLU_RS14795	0.52	-0.2
3,310,499	-		PFLU_RS14795	0.52	+2.8
3,310,499	-		PFLU_RS14795	0.52	-0.1
3,310,499	-		PFLU_RS14795	0.52	-1.5
3,310,499	-		PFLU_RS14795	0.52	+0.8
3,310,499	-		PFLU_RS14795	0.52	+0.2
3,310,499	-		PFLU_RS14795	0.52	+1.3
3,310,533	-		PFLU_RS14795	0.54	+2.1
3,310,645	-		PFLU_RS14795	0.61	+0.3
3,310,687	+		PFLU_RS14795	0.63	+0.5
3,310,688	-		PFLU_RS14795	0.63	-2.5
3,310,688	-		PFLU_RS14795	0.63	+0.3
3,310,688	-		PFLU_RS14795	0.63	+0.5
3,310,690	+		PFLU_RS14795	0.63	+1.5
3,310,690	+		PFLU_RS14795	0.63	+0.5
3,310,690	+		PFLU_RS14795	0.63	+0.3
3,310,690	+		PFLU_RS14795	0.63	-0.2
3,310,690	+		PFLU_RS14795	0.63	+1.0
3,310,690	+		PFLU_RS14795	0.63	-1.1
3,310,690	+		PFLU_RS14795	0.63	-1.2
3,310,690	+		PFLU_RS14795	0.63	-1.5
3,310,690	+		PFLU_RS14795	0.63	-1.2
3,310,690	+		PFLU_RS14795	0.63	-0.5
3,310,690	+		PFLU_RS14795	0.63	-1.5
3,310,691	-		PFLU_RS14795	0.64	+0.2
3,310,691	-		PFLU_RS14795	0.64	+0.2
3,310,691	-		PFLU_RS14795	0.64	-0.2
3,310,691	-		PFLU_RS14795	0.64	-1.3
3,310,691	-		PFLU_RS14795	0.64	-1.8
3,310,691	-		PFLU_RS14795	0.64	+0.3
3,310,691	-		PFLU_RS14795	0.64	-0.0
3,310,765	+		PFLU_RS14795	0.68	-2.1
3,310,766	-		PFLU_RS14795	0.68	-0.2
3,310,766	-		PFLU_RS14795	0.68	-0.2
3,310,766	-		PFLU_RS14795	0.68	+0.4
3,310,766	-		PFLU_RS14795	0.68	+0.4
3,310,766	-		PFLU_RS14795	0.68	-0.2
3,310,766	-		PFLU_RS14795	0.68	-1.1
3,310,766	-		PFLU_RS14795	0.68	+0.8
3,310,810	+		PFLU_RS14795	0.71	+1.1
3,310,811	-		PFLU_RS14795	0.71	-0.3
3,310,819	+		PFLU_RS14795	0.71	+0.5
3,310,820	-		PFLU_RS14795	0.71	+1.4
3,310,820	-		PFLU_RS14795	0.71	-0.8
3,310,820	-		PFLU_RS14795	0.71	-0.0
3,310,884	-		PFLU_RS14795	0.75	+1.3
3,310,940	-		PFLU_RS14795	0.79	-0.5
3,310,957	+		PFLU_RS14795	0.80	-0.3
3,310,958	-		PFLU_RS14795	0.80	+1.8
3,311,010	-		PFLU_RS14795	0.83	-0.1
3,311,074	+		PFLU_RS14795	0.87	+1.3
3,311,074	+		PFLU_RS14795	0.87	+1.4
3,311,075	-		PFLU_RS14795	0.87	-0.5
3,311,083	+		PFLU_RS14795	0.88	+1.5
3,311,084	-		PFLU_RS14795	0.88	-0.5
3,311,084	-		PFLU_RS14795	0.88	+1.4
3,311,095	+		PFLU_RS14795	0.88	+0.5
3,311,095	+		PFLU_RS14795	0.88	+0.4
3,311,095	+		PFLU_RS14795	0.88	-0.2
3,311,096	-		PFLU_RS14795	0.88	+2.3
3,311,096	-		PFLU_RS14795	0.88	-2.1
3,311,096	-		PFLU_RS14795	0.88	-0.4
3,311,096	-		PFLU_RS14795	0.88	+1.1
3,311,256	+				+0.9
3,311,284	+				+0.8
3,311,284	+				+0.5
3,311,284	+				+0.1
3,311,284	+				-0.5
3,311,284	+				-0.7
3,311,284	+				-0.2
3,311,284	+				-0.1
3,311,284	+				-1.7
3,311,284	+				+0.5
3,311,285	-				-1.2
3,311,285	-				-1.9
3,311,377	+				-0.4
3,311,414	-				+0.1
3,311,414	-				+0.2
3,311,414	-				-1.1
3,311,547	-		PFLU_RS14800	0.19	+0.2
3,311,582	+		PFLU_RS14800	0.21	-1.5
3,311,582	+		PFLU_RS14800	0.21	+1.0
3,311,582	+		PFLU_RS14800	0.21	+0.1
3,311,583	-		PFLU_RS14800	0.21	-2.0
3,311,583	-		PFLU_RS14800	0.21	-1.5
3,311,583	-		PFLU_RS14800	0.21	-0.2
3,311,583	-		PFLU_RS14800	0.21	-0.5
3,311,622	+		PFLU_RS14800	0.24	+0.2
3,311,622	+		PFLU_RS14800	0.24	-0.7
3,311,622	+		PFLU_RS14800	0.24	-0.5
3,311,622	+		PFLU_RS14800	0.24	+1.1
3,311,622	+		PFLU_RS14800	0.24	+1.2
3,311,622	+		PFLU_RS14800	0.24	+0.5
3,311,622	+		PFLU_RS14800	0.24	-1.2
3,311,622	+		PFLU_RS14800	0.24	+1.3
3,311,622	+		PFLU_RS14800	0.24	-0.3
3,311,622	+		PFLU_RS14800	0.24	+0.8
3,311,622	+		PFLU_RS14800	0.24	+0.5
3,311,622	+		PFLU_RS14800	0.24	+0.2
3,311,622	+		PFLU_RS14800	0.24	+2.1
3,311,622	+		PFLU_RS14800	0.24	-0.1
3,311,622	+		PFLU_RS14800	0.24	-0.1
3,311,622	+		PFLU_RS14800	0.24	+0.2
3,311,622	+		PFLU_RS14800	0.24	-0.5
3,311,622	+		PFLU_RS14800	0.24	+0.1
3,311,623	-		PFLU_RS14800	0.24	+1.2
3,311,623	-		PFLU_RS14800	0.24	-0.7
3,311,623	-		PFLU_RS14800	0.24	-0.7
3,311,623	-		PFLU_RS14800	0.24	+0.5
3,311,623	-		PFLU_RS14800	0.24	-0.1
3,311,623	-		PFLU_RS14800	0.24	-0.1
3,311,623	-		PFLU_RS14800	0.24	-1.2
3,311,623	-		PFLU_RS14800	0.24	+0.2
3,311,623	-		PFLU_RS14800	0.24	-0.6
3,311,623	-		PFLU_RS14800	0.24	+1.3
3,311,623	-		PFLU_RS14800	0.24	-0.9
3,311,623	-		PFLU_RS14800	0.24	+1.5
3,311,623	-		PFLU_RS14800	0.24	-0.3
3,311,623	-		PFLU_RS14800	0.24	-0.8
3,311,623	-		PFLU_RS14800	0.24	+1.3
3,311,623	-		PFLU_RS14800	0.24	-2.5
3,311,623	-		PFLU_RS14800	0.24	-0.8
3,311,623	-		PFLU_RS14800	0.24	+0.4
3,311,623	-		PFLU_RS14800	0.24	-0.3
3,311,623	-		PFLU_RS14800	0.24	-1.1
3,311,623	-		PFLU_RS14800	0.24	-0.7
3,311,623	-		PFLU_RS14800	0.24	-0.5
3,311,623	-		PFLU_RS14800	0.24	+0.1
3,311,909	-		PFLU_RS14800	0.45	-0.4
3,311,909	-		PFLU_RS14800	0.45	-1.0
3,311,909	-		PFLU_RS14800	0.45	-1.5
3,311,912	+		PFLU_RS14800	0.45	-1.6
3,311,912	+		PFLU_RS14800	0.45	-2.1
3,311,912	+		PFLU_RS14800	0.45	-1.1
3,311,912	+		PFLU_RS14800	0.45	+0.4
3,311,913	-		PFLU_RS14800	0.45	-2.5
3,311,913	-		PFLU_RS14800	0.45	-0.8
3,311,913	-		PFLU_RS14800	0.45	-0.2
3,311,913	-		PFLU_RS14800	0.45	-0.2
3,312,008	+		PFLU_RS14800	0.52	-0.1
3,312,009	-		PFLU_RS14800	0.52	-0.3
3,312,046	+		PFLU_RS14800	0.55	-3.1
3,312,046	+		PFLU_RS14800	0.55	+0.0
3,312,047	-		PFLU_RS14800	0.55	-2.1
3,312,047	-		PFLU_RS14800	0.55	-1.4
3,312,047	-		PFLU_RS14800	0.55	-0.7
3,312,115	+		PFLU_RS14800	0.60	-1.8
3,312,116	-		PFLU_RS14800	0.60	-0.8
3,312,278	+		PFLU_RS14800	0.71	-1.1