Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06380

Experiment: R2A with copper (II) chloride 0.15625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with copper (II) chloride 0.15625 mM
1,360,676	+				-0.7
1,360,729	+				+1.6
1,360,730	-				-0.2
1,360,730	-				+0.1
1,360,870	+		LRK54_RS06370	0.62	+0.2
1,360,870	+		LRK54_RS06370	0.62	+0.9
1,360,870	+		LRK54_RS06370	0.62	-0.1
1,360,870	+		LRK54_RS06370	0.62	+0.3
1,360,870	+		LRK54_RS06370	0.62	+0.1
1,360,871	-		LRK54_RS06370	0.63	-0.5
1,360,871	-		LRK54_RS06370	0.63	+0.8
1,360,871	-		LRK54_RS06370	0.63	-1.4
1,360,871	-		LRK54_RS06370	0.63	-0.2
1,360,871	-		LRK54_RS06370	0.63	+3.5
1,360,871	-		LRK54_RS06370	0.63	-0.1
1,360,923	+				-0.1
1,360,923	+				-0.4
1,360,924	-				-0.9
1,360,932	+				-0.7
1,360,958	+				+0.6
1,361,006	+				+1.9
1,361,006	+				-0.3
1,361,006	+				-0.8
1,361,007	-				-0.5
1,361,007	-				+1.0
1,361,058	-		LRK54_RS06375	0.12	-0.0
1,361,067	+		LRK54_RS06375	0.13	-0.3
1,361,067	+		LRK54_RS06375	0.13	-0.5
1,361,067	+		LRK54_RS06375	0.13	-0.9
1,361,067	+		LRK54_RS06375	0.13	-1.0
1,361,068	-		LRK54_RS06375	0.13	-0.7
1,361,068	-		LRK54_RS06375	0.13	+0.9
1,361,130	+		LRK54_RS06375	0.22	+0.6
1,361,130	+		LRK54_RS06375	0.22	+1.1
1,361,267	-		LRK54_RS06375	0.42	-0.8
1,361,363	+		LRK54_RS06375	0.56	-0.7
1,361,364	-		LRK54_RS06375	0.56	-1.6
1,361,379	+		LRK54_RS06375	0.59	+0.2
1,361,379	+		LRK54_RS06375	0.59	-0.5
1,361,379	+		LRK54_RS06375	0.59	-0.2
1,361,379	+		LRK54_RS06375	0.59	-0.1
1,361,398	+		LRK54_RS06375	0.61	-1.0
1,361,398	+		LRK54_RS06375	0.61	+1.3
1,361,398	+		LRK54_RS06375	0.61	-0.3
1,361,462	+		LRK54_RS06375	0.71	+0.5
1,361,462	+		LRK54_RS06375	0.71	-0.9
1,361,463	-		LRK54_RS06375	0.71	-0.4
1,361,589	+		LRK54_RS06375	0.89	-0.5
1,361,602	+				+0.9
1,361,641	+				-0.3
1,361,674	+				+2.3
1,361,674	+				+0.2
1,361,675	-				-1.6
1,361,820	+				-1.1
1,361,821	-				+1.5
1,361,821	-				+1.6
1,361,821	-				+0.1
1,361,822	+				-0.2
1,361,850	+		LRK54_RS06380	0.11	+1.5
1,361,999	+		LRK54_RS06380	0.19	+1.9
1,361,999	+		LRK54_RS06380	0.19	+0.3
1,361,999	+		LRK54_RS06380	0.19	-0.1
1,362,000	-		LRK54_RS06380	0.19	+0.9
1,362,000	-		LRK54_RS06380	0.19	-0.2
1,362,031	+		LRK54_RS06380	0.21	-0.4
1,362,031	+		LRK54_RS06380	0.21	-0.5
1,362,032	-		LRK54_RS06380	0.21	-0.6
1,362,060	+		LRK54_RS06380	0.23	-0.3
1,362,060	+		LRK54_RS06380	0.23	-0.1
1,362,060	+		LRK54_RS06380	0.23	+1.1
1,362,060	+		LRK54_RS06380	0.23	-0.4
1,362,061	-		LRK54_RS06380	0.23	-0.8
1,362,061	-		LRK54_RS06380	0.23	+0.0
1,362,097	+		LRK54_RS06380	0.25	-0.1
1,362,097	+		LRK54_RS06380	0.25	-0.5
1,362,098	-		LRK54_RS06380	0.25	+0.7
1,362,098	-		LRK54_RS06380	0.25	-0.5
1,362,110	+		LRK54_RS06380	0.26	+0.6
1,362,110	+		LRK54_RS06380	0.26	-0.1
1,362,110	+		LRK54_RS06380	0.26	-1.1
1,362,110	+		LRK54_RS06380	0.26	-1.3
1,362,110	+		LRK54_RS06380	0.26	+0.1
1,362,111	-		LRK54_RS06380	0.26	+0.4
1,362,111	-		LRK54_RS06380	0.26	-0.6
1,362,111	-		LRK54_RS06380	0.26	-0.5
1,362,111	-		LRK54_RS06380	0.26	-0.5
1,362,148	+		LRK54_RS06380	0.28	+1.4
1,362,148	+		LRK54_RS06380	0.28	+0.4
1,362,148	+		LRK54_RS06380	0.28	-0.4
1,362,148	+		LRK54_RS06380	0.28	+0.5
1,362,148	+		LRK54_RS06380	0.28	-1.3
1,362,149	-		LRK54_RS06380	0.28	-1.0
1,362,165	+		LRK54_RS06380	0.29	+0.2
1,362,348	-		LRK54_RS06380	0.39	+0.1
1,362,363	+		LRK54_RS06380	0.40	-1.5
1,362,363	+		LRK54_RS06380	0.40	-0.5
1,362,363	+		LRK54_RS06380	0.40	-1.1
1,362,364	-		LRK54_RS06380	0.40	+0.2
1,362,364	-		LRK54_RS06380	0.40	-0.7
1,362,364	-		LRK54_RS06380	0.40	-1.1
1,362,419	+		LRK54_RS06380	0.43	-1.6
1,362,419	+		LRK54_RS06380	0.43	-0.7
1,362,419	+		LRK54_RS06380	0.43	-1.1
1,362,490	+		LRK54_RS06380	0.47	-0.4
1,362,490	+		LRK54_RS06380	0.47	+0.6
1,362,491	-		LRK54_RS06380	0.47	+0.1
1,362,706	+		LRK54_RS06380	0.60	+1.0
1,362,706	+		LRK54_RS06380	0.60	-0.7
1,362,706	+		LRK54_RS06380	0.60	+0.1
1,362,706	+		LRK54_RS06380	0.60	-0.4
1,362,707	-		LRK54_RS06380	0.60	-1.0
1,362,707	-		LRK54_RS06380	0.60	+0.4
1,362,789	+		LRK54_RS06380	0.64	-1.8
1,363,002	+		LRK54_RS06380	0.77	+0.7
1,363,002	+		LRK54_RS06380	0.77	+2.4
1,363,192	+		LRK54_RS06380	0.87	-0.8
1,363,192	+		LRK54_RS06380	0.87	-0.8
1,363,192	+		LRK54_RS06380	0.87	-0.2
1,363,192	+		LRK54_RS06380	0.87	+0.1
1,363,192	+		LRK54_RS06380	0.87	+0.6
1,363,192	+		LRK54_RS06380	0.87	-1.6
1,363,192	+		LRK54_RS06380	0.87	-0.4
1,363,192	+		LRK54_RS06380	0.87	-1.1
1,363,192	+		LRK54_RS06380	0.87	+0.1
1,363,192	+		LRK54_RS06380	0.87	+0.0
1,363,192	+		LRK54_RS06380	0.87	-1.5
1,363,192	+		LRK54_RS06380	0.87	+0.5
1,363,192	+		LRK54_RS06380	0.87	+1.1
1,363,193	-		LRK54_RS06380	0.88	-0.8
1,363,193	-		LRK54_RS06380	0.88	-0.2
1,363,193	-		LRK54_RS06380	0.88	-0.4
1,363,193	-		LRK54_RS06380	0.88	-0.6
1,363,193	-		LRK54_RS06380	0.88	+0.9
1,363,193	-		LRK54_RS06380	0.88	+1.1
1,363,193	-		LRK54_RS06380	0.88	+0.0
1,363,193	-		LRK54_RS06380	0.88	+0.1
1,363,201	+		LRK54_RS06380	0.88	+0.3
1,363,201	+		LRK54_RS06380	0.88	-1.0
1,363,201	+		LRK54_RS06380	0.88	-0.0
1,363,201	+		LRK54_RS06380	0.88	+0.5
1,363,202	-		LRK54_RS06380	0.88	+0.6
1,363,202	-		LRK54_RS06380	0.88	+1.0
1,363,202	-		LRK54_RS06380	0.88	-0.6
1,363,202	-		LRK54_RS06380	0.88	-0.6
1,363,202	-		LRK54_RS06380	0.88	-0.3
1,363,216	+		LRK54_RS06380	0.89	-1.0
1,363,216	+		LRK54_RS06380	0.89	+1.4
1,363,216	+		LRK54_RS06380	0.89	+0.2
1,363,216	+		LRK54_RS06380	0.89	+2.4
1,363,216	+		LRK54_RS06380	0.89	-0.2
1,363,216	+		LRK54_RS06380	0.89	-1.0
1,363,216	+		LRK54_RS06380	0.89	+0.4
1,363,216	+		LRK54_RS06380	0.89	-1.8
1,363,216	+		LRK54_RS06380	0.89	-0.3
1,363,216	+		LRK54_RS06380	0.89	-0.6
1,363,217	-		LRK54_RS06380	0.89	+0.3
1,363,217	-		LRK54_RS06380	0.89	-1.5
1,363,217	-		LRK54_RS06380	0.89	-1.8
1,363,217	-		LRK54_RS06380	0.89	+0.7
1,363,217	-		LRK54_RS06380	0.89	-1.0
1,363,217	-		LRK54_RS06380	0.89	+0.1
1,363,217	-		LRK54_RS06380	0.89	+0.2
1,363,217	-		LRK54_RS06380	0.89	-1.1
1,363,217	-		LRK54_RS06380	0.89	-0.5
1,363,217	-		LRK54_RS06380	0.89	-2.4
1,363,217	-		LRK54_RS06380	0.89	+0.4
1,363,217	-		LRK54_RS06380	0.89	+0.2
1,363,280	+				-1.3
1,363,280	+				-0.7
1,363,281	-				-0.6
1,363,281	-				+0.3
1,363,281	-				+0.2
1,363,355	+				+0.6
1,363,383	-				+0.4
1,363,383	-				-1.5
1,363,498	+				-1.1
1,363,499	-				-0.7
1,363,499	-				-0.5
1,363,499	-				-0.3
1,363,540	+				-1.1
1,363,540	+				-0.6
1,363,542	+				+0.6
1,363,542	+				-0.1
1,363,543	-				-0.1
1,363,543	-				+0.7
1,363,597	+				+0.6
1,363,597	+				+0.3
1,363,597	+				-0.1
1,363,597	+				-1.2
1,363,597	+				+0.1
1,363,597	+				-0.8
1,363,597	+				+0.8
1,363,597	+				-0.4
1,363,598	-				-0.8
1,363,598	-				+0.5
1,363,598	-				+1.7
1,363,598	-				+1.5
1,363,598	-				+0.7
1,363,598	-				+0.9
1,363,598	-				-1.1
1,363,598	-				-1.9
1,363,601	+				+0.1
1,363,602	-				-1.1
1,363,602	-				+0.9
1,363,636	+		LRK54_RS06385	0.11	+0.3
1,363,636	+		LRK54_RS06385	0.11	+2.9
1,363,637	-		LRK54_RS06385	0.11	+0.3
1,363,655	-		LRK54_RS06385	0.12	-0.5
1,363,710	+		LRK54_RS06385	0.14	-0.3
1,363,711	-		LRK54_RS06385	0.14	+0.6
1,363,805	+		LRK54_RS06385	0.19	-0.1
1,363,817	-		LRK54_RS06385	0.19	+1.1
1,363,845	-		LRK54_RS06385	0.21	+3.4
1,363,856	+		LRK54_RS06385	0.21	+1.0
1,363,857	-		LRK54_RS06385	0.21	+1.4
1,363,857	-		LRK54_RS06385	0.21	+0.3
1,363,877	+		LRK54_RS06385	0.22	+0.1
1,363,878	-		LRK54_RS06385	0.22	-0.7
1,363,893	+		LRK54_RS06385	0.23	-2.7
1,363,894	-		LRK54_RS06385	0.23	-1.7
1,363,894	-		LRK54_RS06385	0.23	-1.6
1,363,906	+		LRK54_RS06385	0.23	-0.2
1,363,906	+		LRK54_RS06385	0.23	+1.1
1,363,906	+		LRK54_RS06385	0.23	-0.2
1,363,907	-		LRK54_RS06385	0.23	-0.5
1,363,907	-		LRK54_RS06385	0.23	-0.4
1,363,907	-		LRK54_RS06385	0.23	-1.4
1,363,907	-		LRK54_RS06385	0.23	+0.9
1,363,907	-		LRK54_RS06385	0.23	+0.2
1,364,026	+		LRK54_RS06385	0.29	+0.1
1,364,026	+		LRK54_RS06385	0.29	-0.7
1,364,122	+		LRK54_RS06385	0.33	+0.4
1,364,122	+		LRK54_RS06385	0.33	+0.4
1,364,132	-		LRK54_RS06385	0.34	+0.4
1,364,132	-		LRK54_RS06385	0.34	-0.7
1,364,232	-		LRK54_RS06385	0.38	-0.4
1,364,232	-		LRK54_RS06385	0.38	+0.8
1,364,232	-		LRK54_RS06385	0.38	+0.1
1,364,239	-		LRK54_RS06385	0.39	+1.2
1,364,259	-		LRK54_RS06385	0.40	-1.6
1,364,364	+		LRK54_RS06385	0.44	-0.5
1,364,364	+		LRK54_RS06385	0.44	-0.4
1,364,364	+		LRK54_RS06385	0.44	-0.2
1,364,364	+		LRK54_RS06385	0.44	-0.1
1,364,364	+		LRK54_RS06385	0.44	+0.1
1,364,364	+		LRK54_RS06385	0.44	-1.0
1,364,364	+		LRK54_RS06385	0.44	-0.1
1,364,364	+		LRK54_RS06385	0.44	-0.9
1,364,364	+		LRK54_RS06385	0.44	-1.0
1,364,364	+		LRK54_RS06385	0.44	-0.2
1,364,364	+		LRK54_RS06385	0.44	+0.1
1,364,364	+		LRK54_RS06385	0.44	+0.7
1,364,365	-		LRK54_RS06385	0.44	-0.4
1,364,365	-		LRK54_RS06385	0.44	+0.2
1,364,365	-		LRK54_RS06385	0.44	-0.7
1,364,365	-		LRK54_RS06385	0.44	+0.9
1,364,365	-		LRK54_RS06385	0.44	+0.2
1,364,365	-		LRK54_RS06385	0.44	-1.2
1,364,365	-		LRK54_RS06385	0.44	-0.3
1,364,365	-		LRK54_RS06385	0.44	+0.0
1,364,367	+		LRK54_RS06385	0.45	+1.0
1,364,367	+		LRK54_RS06385	0.45	+0.4
1,364,367	+		LRK54_RS06385	0.45	+0.5
1,364,367	+		LRK54_RS06385	0.45	+0.9
1,364,367	+		LRK54_RS06385	0.45	-0.6
1,364,367	+		LRK54_RS06385	0.45	-0.2
1,364,367	+		LRK54_RS06385	0.45	-0.3
1,364,367	+		LRK54_RS06385	0.45	-0.1
1,364,367	+		LRK54_RS06385	0.45	-1.1
1,364,367	+		LRK54_RS06385	0.45	-0.0
1,364,367	+		LRK54_RS06385	0.45	+0.6
1,364,367	+		LRK54_RS06385	0.45	-0.1
1,364,367	+		LRK54_RS06385	0.45	-0.4
1,364,368	-		LRK54_RS06385	0.45	+0.1
1,364,368	-		LRK54_RS06385	0.45	-1.7
1,364,368	-		LRK54_RS06385	0.45	-1.8
1,364,368	-		LRK54_RS06385	0.45	-0.5
1,364,368	-		LRK54_RS06385	0.45	+1.5
1,364,368	-		LRK54_RS06385	0.45	-0.5
1,364,368	-		LRK54_RS06385	0.45	-0.9