Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2001

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2000 and Ac3H11_2001 are separated by 125 nucleotidesAc3H11_2001 and Ac3H11_2002 are separated by 180 nucleotides Ac3H11_2000 - LSU m5C1962 methyltransferase RlmI, at 216,129 to 217,322 _2000 Ac3H11_2001 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 217,448 to 218,509 _2001 Ac3H11_2002 - C4-type zinc finger protein, DksA/TraR family, at 218,690 to 219,517 _2002 Position (kb) 217 218 219Strain fitness (log2 ratio) -2 -1 0 1 2at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.606 kb on - strand, within Ac3H11_2000at 216.711 kb on + strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.750 kb on + strand, within Ac3H11_2000at 216.751 kb on - strand, within Ac3H11_2000at 216.751 kb on - strand, within Ac3H11_2000at 216.795 kb on + strand, within Ac3H11_2000at 216.796 kb on - strand, within Ac3H11_2000at 216.796 kb on - strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.221 kb on + strandat 217.221 kb on + strandat 217.221 kb on + strandat 217.221 kb on + strandat 217.221 kb on + strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.287 kb on + strandat 217.287 kb on + strandat 217.287 kb on + strandat 217.359 kb on + strandat 217.360 kb on - strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.447 kb on + strandat 217.447 kb on + strandat 217.447 kb on + strandat 217.447 kb on + strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 218.235 kb on - strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.301 kb on - strand, within Ac3H11_2001at 218.301 kb on - strand, within Ac3H11_2001at 218.321 kb on + strand, within Ac3H11_2001at 218.321 kb on + strand, within Ac3H11_2001at 218.322 kb on - strand, within Ac3H11_2001at 218.322 kb on - strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.339 kb on - strand, within Ac3H11_2001at 218.339 kb on - strand, within Ac3H11_2001at 218.339 kb on - strand, within Ac3H11_2001at 218.339 kb on - strand, within Ac3H11_2001at 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.558 kb on - strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.610 kb on + strandat 218.670 kb on + strandat 218.961 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.012 kb on + strand, within Ac3H11_2002at 219.012 kb on + strand, within Ac3H11_2002

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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216,531 + Ac3H11_2000 0.34 -0.9
216,531 + Ac3H11_2000 0.34 -0.4
216,531 + Ac3H11_2000 0.34 -0.9
216,531 + Ac3H11_2000 0.34 +0.5
216,531 + Ac3H11_2000 0.34 -0.3
216,531 + Ac3H11_2000 0.34 -0.8
216,532 - Ac3H11_2000 0.34 +0.8
216,532 - Ac3H11_2000 0.34 +0.1
216,532 - Ac3H11_2000 0.34 +0.6
216,532 - Ac3H11_2000 0.34 -0.2
216,532 - Ac3H11_2000 0.34 -1.8
216,532 - Ac3H11_2000 0.34 -0.2
216,606 - Ac3H11_2000 0.40 -1.3
216,711 + Ac3H11_2000 0.49 +0.1
216,712 - Ac3H11_2000 0.49 -0.2
216,712 - Ac3H11_2000 0.49 -0.3
216,712 - Ac3H11_2000 0.49 +0.2
216,712 - Ac3H11_2000 0.49 -0.2
216,712 - Ac3H11_2000 0.49 +0.3
216,750 + Ac3H11_2000 0.52 +0.6
216,751 - Ac3H11_2000 0.52 -1.8
216,751 - Ac3H11_2000 0.52 +0.1
216,795 + Ac3H11_2000 0.56 +0.1
216,796 - Ac3H11_2000 0.56 +2.3
216,796 - Ac3H11_2000 0.56 -0.8
217,080 + Ac3H11_2000 0.80 -1.3
217,080 + Ac3H11_2000 0.80 -0.1
217,080 + Ac3H11_2000 0.80 -0.5
217,080 + Ac3H11_2000 0.80 -0.0
217,080 + Ac3H11_2000 0.80 -0.4
217,081 - Ac3H11_2000 0.80 -1.0
217,081 - Ac3H11_2000 0.80 +0.4
217,081 - Ac3H11_2000 0.80 -0.4
217,081 - Ac3H11_2000 0.80 +0.6
217,081 - Ac3H11_2000 0.80 +1.1
217,081 - Ac3H11_2000 0.80 -0.1
217,081 - Ac3H11_2000 0.80 +0.4
217,081 - Ac3H11_2000 0.80 +0.6
217,221 + -1.5
217,221 + +1.5
217,221 + +0.0
217,221 + -1.2
217,221 + -0.0
217,222 - -1.0
217,222 - -0.3
217,222 - +0.1
217,222 - -0.0
217,222 - -0.4
217,222 - +0.5
217,287 + +0.6
217,287 + +0.8
217,287 + -1.0
217,359 + -0.3
217,360 - +0.3
217,422 + +2.0
217,422 + -0.2
217,422 + +0.1
217,422 + -0.4
217,422 + -1.0
217,422 + +1.0
217,422 + +0.8
217,423 - -1.0
217,423 - -2.2
217,423 - -1.4
217,423 - +0.1
217,423 - -0.9
217,423 - +0.4
217,423 - -0.4
217,423 - -0.8
217,423 - -0.0
217,423 - -0.3
217,423 - +0.5
217,423 - +0.8
217,423 - -0.2
217,423 - -0.4
217,447 + -0.2
217,447 + +0.4
217,447 + +0.4
217,447 + -1.8
217,448 - +0.1
217,448 - -1.5
217,448 - -0.0
217,448 - -0.8
217,448 - -1.4
217,448 - +0.3
217,448 - -0.3
217,448 - +1.6
217,448 - -2.3
217,811 + Ac3H11_2001 0.34 -1.9
217,811 + Ac3H11_2001 0.34 -0.7
217,811 + Ac3H11_2001 0.34 -1.6
217,811 + Ac3H11_2001 0.34 -0.5
217,811 + Ac3H11_2001 0.34 +2.1
217,811 + Ac3H11_2001 0.34 -2.5
217,811 + Ac3H11_2001 0.34 -0.7
217,811 + Ac3H11_2001 0.34 +0.0
217,811 + Ac3H11_2001 0.34 +0.4
217,811 + Ac3H11_2001 0.34 -1.9
217,811 + Ac3H11_2001 0.34 -0.1
217,812 - Ac3H11_2001 0.34 -0.5
217,812 - Ac3H11_2001 0.34 -0.5
217,812 - Ac3H11_2001 0.34 -1.4
217,812 - Ac3H11_2001 0.34 -0.6
217,812 - Ac3H11_2001 0.34 +0.3
217,812 - Ac3H11_2001 0.34 -0.5
217,812 - Ac3H11_2001 0.34 +0.1
217,812 - Ac3H11_2001 0.34 -0.2
217,812 - Ac3H11_2001 0.34 -0.7
217,812 - Ac3H11_2001 0.34 -0.2
217,812 - Ac3H11_2001 0.34 -0.1
218,235 - Ac3H11_2001 0.74 -2.2
218,300 + Ac3H11_2001 0.80 -0.2
218,300 + Ac3H11_2001 0.80 -0.1
218,300 + Ac3H11_2001 0.80 -0.3
218,300 + Ac3H11_2001 0.80 -2.0
218,300 + Ac3H11_2001 0.80 -0.2
218,301 - Ac3H11_2001 0.80 -0.1
218,301 - Ac3H11_2001 0.80 -2.0
218,321 + Ac3H11_2001 0.82 -1.0
218,321 + Ac3H11_2001 0.82 -1.8
218,322 - Ac3H11_2001 0.82 -0.4
218,322 - Ac3H11_2001 0.82 +1.5
218,335 + Ac3H11_2001 0.84 -0.4
218,335 + Ac3H11_2001 0.84 -0.3
218,335 + Ac3H11_2001 0.84 -0.8
218,335 + Ac3H11_2001 0.84 -0.8
218,335 + Ac3H11_2001 0.84 -1.1
218,335 + Ac3H11_2001 0.84 -0.3
218,336 - Ac3H11_2001 0.84 -0.5
218,336 - Ac3H11_2001 0.84 -0.8
218,336 - Ac3H11_2001 0.84 -1.2
218,336 - Ac3H11_2001 0.84 -0.5
218,336 - Ac3H11_2001 0.84 -1.7
218,336 - Ac3H11_2001 0.84 -1.3
218,336 - Ac3H11_2001 0.84 -1.7
218,336 - Ac3H11_2001 0.84 -2.0
218,336 - Ac3H11_2001 0.84 -0.5
218,336 - Ac3H11_2001 0.84 +0.3
218,336 - Ac3H11_2001 0.84 -0.6
218,336 - Ac3H11_2001 0.84 -0.6
218,338 + Ac3H11_2001 0.84 -1.0
218,338 + Ac3H11_2001 0.84 -0.5
218,338 + Ac3H11_2001 0.84 -1.3
218,338 + Ac3H11_2001 0.84 +0.2
218,338 + Ac3H11_2001 0.84 -0.4
218,338 + Ac3H11_2001 0.84 +1.0
218,338 + Ac3H11_2001 0.84 -0.9
218,338 + Ac3H11_2001 0.84 -1.2
218,338 + Ac3H11_2001 0.84 -0.7
218,339 - Ac3H11_2001 0.84 -0.1
218,339 - Ac3H11_2001 0.84 -0.2
218,339 - Ac3H11_2001 0.84 -0.8
218,339 - Ac3H11_2001 0.84 -1.1
218,557 + +0.5
218,557 + +0.6
218,557 + -2.7
218,557 + -0.5
218,557 + -0.8
218,557 + -0.0
218,557 + +0.1
218,557 + +0.1
218,558 - +0.3
218,594 + +0.4
218,594 + +0.2
218,594 + -1.3
218,594 + -0.5
218,610 + -0.1
218,670 + -0.6
218,961 + Ac3H11_2002 0.33 -0.8
219,008 + Ac3H11_2002 0.38 -0.0
219,008 + Ac3H11_2002 0.38 -0.6
219,008 + Ac3H11_2002 0.38 -2.0
219,012 + Ac3H11_2002 0.39 -0.6
219,012 + Ac3H11_2002 0.39 +0.4

Or see this region's nucleotide sequence