Experiment: Beta-alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19160 and ABZR87_RS19165 are separated by 123 nucleotides ABZR87_RS19165 and ABZR87_RS19170 are separated by 2 nucleotides
ABZR87_RS19160: ABZR87_RS19160 - cytochrome-c peroxidase, at 661,940 to 663,346
_RS19160
ABZR87_RS19165: ABZR87_RS19165 - TerC family protein, at 663,470 to 665,050
_RS19165
ABZR87_RS19170: ABZR87_RS19170 - DMT family transporter, at 665,053 to 665,970
_RS19170
Position (kb) 663
664
665
666 Strain fitness (log2 ratio) -1
0
1 at 662.693 kb on + strand, within ABZR87_RS19160 at 662.693 kb on + strand, within ABZR87_RS19160 at 662.693 kb on + strand, within ABZR87_RS19160 at 662.700 kb on - strand, within ABZR87_RS19160 at 662.867 kb on - strand, within ABZR87_RS19160 at 662.867 kb on - strand, within ABZR87_RS19160 at 662.979 kb on - strand, within ABZR87_RS19160 at 663.080 kb on + strand, within ABZR87_RS19160 at 663.081 kb on - strand, within ABZR87_RS19160 at 663.081 kb on - strand, within ABZR87_RS19160 at 663.168 kb on - strand, within ABZR87_RS19160 at 663.344 kb on + strand at 663.345 kb on - strand at 663.345 kb on - strand at 663.459 kb on + strand at 663.460 kb on - strand at 663.460 kb on - strand at 663.460 kb on - strand at 663.469 kb on + strand at 664.094 kb on - strand, within ABZR87_RS19165 at 664.106 kb on + strand, within ABZR87_RS19165 at 664.107 kb on - strand, within ABZR87_RS19165 at 664.107 kb on - strand, within ABZR87_RS19165 at 664.112 kb on + strand, within ABZR87_RS19165 at 664.113 kb on - strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.181 kb on + strand, within ABZR87_RS19165 at 664.408 kb on + strand, within ABZR87_RS19165 at 664.408 kb on + strand, within ABZR87_RS19165 at 664.488 kb on + strand, within ABZR87_RS19165 at 664.575 kb on + strand, within ABZR87_RS19165 at 664.576 kb on - strand, within ABZR87_RS19165 at 664.895 kb on + strand at 665.048 kb on + strand at 665.049 kb on - strand at 665.054 kb on + strand at 665.055 kb on - strand at 665.055 kb on - strand at 665.294 kb on + strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.298 kb on - strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.897 kb on - strand at 665.933 kb on + strand at 665.933 kb on + strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-alanine (C) remove 662,693 + ABZR87_RS19160 0.54 +0.2 662,693 + ABZR87_RS19160 0.54 +0.5 662,693 + ABZR87_RS19160 0.54 -0.0 662,700 - ABZR87_RS19160 0.54 -0.2 662,867 - ABZR87_RS19160 0.66 +0.0 662,867 - ABZR87_RS19160 0.66 -1.0 662,979 - ABZR87_RS19160 0.74 +0.1 663,080 + ABZR87_RS19160 0.81 +1.1 663,081 - ABZR87_RS19160 0.81 -0.5 663,081 - ABZR87_RS19160 0.81 +0.8 663,168 - ABZR87_RS19160 0.87 -0.0 663,344 + +0.7 663,345 - +0.2 663,345 - -0.1 663,459 + +0.3 663,460 - +0.1 663,460 - -0.0 663,460 - -0.9 663,469 + +0.5 664,094 - ABZR87_RS19165 0.39 -0.3 664,106 + ABZR87_RS19165 0.40 +0.0 664,107 - ABZR87_RS19165 0.40 -0.0 664,107 - ABZR87_RS19165 0.40 -0.5 664,112 + ABZR87_RS19165 0.41 -0.2 664,113 - ABZR87_RS19165 0.41 +0.5 664,176 + ABZR87_RS19165 0.45 +0.7 664,176 + ABZR87_RS19165 0.45 -0.6 664,176 + ABZR87_RS19165 0.45 +0.5 664,176 + ABZR87_RS19165 0.45 +1.0 664,177 - ABZR87_RS19165 0.45 +0.4 664,177 - ABZR87_RS19165 0.45 +0.5 664,177 - ABZR87_RS19165 0.45 +0.2 664,181 + ABZR87_RS19165 0.45 -0.3 664,408 + ABZR87_RS19165 0.59 +0.9 664,408 + ABZR87_RS19165 0.59 +0.5 664,488 + ABZR87_RS19165 0.64 -0.3 664,575 + ABZR87_RS19165 0.70 +0.3 664,576 - ABZR87_RS19165 0.70 +0.1 664,895 + +0.3 665,048 + +0.1 665,049 - -0.0 665,054 + +0.2 665,055 - -0.5 665,055 - -0.6 665,294 + ABZR87_RS19170 0.26 -0.2 665,295 - ABZR87_RS19170 0.26 +0.3 665,295 - ABZR87_RS19170 0.26 -0.2 665,297 + ABZR87_RS19170 0.27 -0.7 665,297 + ABZR87_RS19170 0.27 -0.5 665,297 + ABZR87_RS19170 0.27 -0.4 665,298 - ABZR87_RS19170 0.27 +0.3 665,715 + ABZR87_RS19170 0.72 +0.1 665,715 + ABZR87_RS19170 0.72 +0.2 665,716 - ABZR87_RS19170 0.72 -1.0 665,716 - ABZR87_RS19170 0.72 +0.2 665,716 - ABZR87_RS19170 0.72 +0.4 665,897 - +0.5 665,933 + +0.2 665,933 + -0.3 665,934 - +0.3 665,934 - -0.3 665,934 - +0.1 665,970 + -0.5
Or see this region's nucleotide sequence