Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14560

Experiment: Beta-alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14550 and ABZR87_RS14555 are separated by 71 nucleotidesABZR87_RS14555 and ABZR87_RS14560 are separated by 22 nucleotidesABZR87_RS14560 and ABZR87_RS14565 are separated by 3 nucleotidesABZR87_RS14565 and ABZR87_RS14570 are separated by 10 nucleotides ABZR87_RS14550: ABZR87_RS14550 - succinate dehydrogenase assembly factor 2, at 3,074,556 to 3,074,843 _RS14550 ABZR87_RS14555: ABZR87_RS14555 - succinate dehydrogenase iron-sulfur subunit, at 3,074,915 to 3,075,616 _RS14555 ABZR87_RS14560: ABZR87_RS14560 - succinate dehydrogenase flavoprotein subunit, at 3,075,639 to 3,077,417 _RS14560 ABZR87_RS14565: ABZR87_RS14565 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 3,077,421 to 3,077,786 _RS14565 ABZR87_RS14570: ABZR87_RS14570 - succinate dehydrogenase, cytochrome b556 subunit, at 3,077,797 to 3,078,207 _RS14570 Position (kb) 3075 3076 3077 3078Strain fitness (log2 ratio) -2 -1 0 1at 3075.641 kb on - strandat 3078.298 kb on - strandat 3078.378 kb on + strandat 3078.379 kb on - strandat 3078.379 kb on - strandat 3078.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-alanine (C)
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3,075,641 - +0.5
3,078,298 - +0.5
3,078,378 + +0.3
3,078,379 - +0.2
3,078,379 - -0.8
3,078,379 - -1.9

Or see this region's nucleotide sequence