Experiment: Beta-alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14550 and ABZR87_RS14555 are separated by 71 nucleotides ABZR87_RS14555 and ABZR87_RS14560 are separated by 22 nucleotides ABZR87_RS14560 and ABZR87_RS14565 are separated by 3 nucleotides ABZR87_RS14565 and ABZR87_RS14570 are separated by 10 nucleotides
ABZR87_RS14550: ABZR87_RS14550 - succinate dehydrogenase assembly factor 2, at 3,074,556 to 3,074,843
_RS14550
ABZR87_RS14555: ABZR87_RS14555 - succinate dehydrogenase iron-sulfur subunit, at 3,074,915 to 3,075,616
_RS14555
ABZR87_RS14560: ABZR87_RS14560 - succinate dehydrogenase flavoprotein subunit, at 3,075,639 to 3,077,417
_RS14560
ABZR87_RS14565: ABZR87_RS14565 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 3,077,421 to 3,077,786
_RS14565
ABZR87_RS14570: ABZR87_RS14570 - succinate dehydrogenase, cytochrome b556 subunit, at 3,077,797 to 3,078,207
_RS14570
Position (kb)
3075
3076
3077
3078 Strain fitness (log2 ratio)
-2
-1
0
1 at 3075.641 kb on - strand at 3078.298 kb on - strand at 3078.378 kb on + strand at 3078.379 kb on - strand at 3078.379 kb on - strand at 3078.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-alanine (C) remove 3,075,641 - +0.5 3,078,298 - +0.5 3,078,378 + +0.3 3,078,379 - +0.2 3,078,379 - -0.8 3,078,379 - -1.9
Or see this region's nucleotide sequence