Experiment: Beta-alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07770 and ABZR87_RS07775 are separated by 12 nucleotides ABZR87_RS07775 and ABZR87_RS07780 are separated by 21 nucleotides
ABZR87_RS07770: ABZR87_RS07770 - rRNA maturation RNase YbeY, at 1,648,593 to 1,649,405
_RS07770
ABZR87_RS07775: ABZR87_RS07775 - PhoH family protein, at 1,649,418 to 1,650,410
_RS07775
ABZR87_RS07780: ABZR87_RS07780 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 1,650,432 to 1,651,802
_RS07780
Position (kb)
1649
1650
1651 Strain fitness (log2 ratio)
-1
0
1
2 at 1648.595 kb on - strand at 1649.320 kb on - strand, within ABZR87_RS07770 at 1649.419 kb on + strand at 1649.420 kb on - strand at 1649.420 kb on - strand at 1649.429 kb on + strand at 1649.430 kb on - strand at 1649.430 kb on - strand at 1649.430 kb on - strand at 1649.452 kb on + strand at 1649.453 kb on - strand at 1649.643 kb on - strand, within ABZR87_RS07775 at 1649.728 kb on + strand, within ABZR87_RS07775 at 1649.729 kb on - strand, within ABZR87_RS07775 at 1649.801 kb on - strand, within ABZR87_RS07775 at 1649.801 kb on - strand, within ABZR87_RS07775 at 1649.827 kb on + strand, within ABZR87_RS07775 at 1649.827 kb on + strand, within ABZR87_RS07775 at 1649.828 kb on - strand, within ABZR87_RS07775 at 1649.962 kb on + strand, within ABZR87_RS07775 at 1649.963 kb on - strand, within ABZR87_RS07775 at 1649.963 kb on - strand, within ABZR87_RS07775 at 1649.963 kb on - strand, within ABZR87_RS07775 at 1650.028 kb on + strand, within ABZR87_RS07775 at 1650.074 kb on + strand, within ABZR87_RS07775 at 1650.075 kb on - strand, within ABZR87_RS07775 at 1650.075 kb on - strand, within ABZR87_RS07775 at 1650.133 kb on + strand, within ABZR87_RS07775 at 1650.134 kb on - strand, within ABZR87_RS07775 at 1650.217 kb on + strand, within ABZR87_RS07775 at 1650.217 kb on + strand, within ABZR87_RS07775 at 1650.217 kb on + strand, within ABZR87_RS07775 at 1650.218 kb on - strand, within ABZR87_RS07775 at 1650.746 kb on + strand, within ABZR87_RS07780 at 1650.746 kb on + strand, within ABZR87_RS07780 at 1650.747 kb on - strand, within ABZR87_RS07780 at 1650.788 kb on + strand, within ABZR87_RS07780 at 1650.790 kb on + strand, within ABZR87_RS07780 at 1650.791 kb on - strand, within ABZR87_RS07780 at 1650.791 kb on - strand, within ABZR87_RS07780 at 1650.791 kb on - strand, within ABZR87_RS07780 at 1650.791 kb on - strand, within ABZR87_RS07780 at 1650.946 kb on + strand, within ABZR87_RS07780 at 1650.947 kb on - strand, within ABZR87_RS07780 at 1650.947 kb on - strand, within ABZR87_RS07780 at 1651.049 kb on - strand, within ABZR87_RS07780 at 1651.049 kb on - strand, within ABZR87_RS07780 at 1651.049 kb on - strand, within ABZR87_RS07780 at 1651.049 kb on - strand, within ABZR87_RS07780 at 1651.096 kb on + strand, within ABZR87_RS07780 at 1651.132 kb on + strand, within ABZR87_RS07780 at 1651.133 kb on - strand, within ABZR87_RS07780 at 1651.133 kb on - strand, within ABZR87_RS07780 at 1651.133 kb on - strand, within ABZR87_RS07780 at 1651.189 kb on + strand, within ABZR87_RS07780 at 1651.189 kb on + strand, within ABZR87_RS07780 at 1651.189 kb on + strand, within ABZR87_RS07780 at 1651.189 kb on + strand, within ABZR87_RS07780 at 1651.189 kb on + strand, within ABZR87_RS07780 at 1651.190 kb on - strand, within ABZR87_RS07780 at 1651.190 kb on - strand, within ABZR87_RS07780 at 1651.190 kb on - strand, within ABZR87_RS07780 at 1651.190 kb on - strand, within ABZR87_RS07780 at 1651.190 kb on - strand, within ABZR87_RS07780 at 1651.319 kb on - strand, within ABZR87_RS07780 at 1651.327 kb on + strand, within ABZR87_RS07780 at 1651.327 kb on + strand, within ABZR87_RS07780
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-alanine (C) remove 1,648,595 - -0.2 1,649,320 - ABZR87_RS07770 0.89 -0.0 1,649,419 + +1.9 1,649,420 - +0.1 1,649,420 - +0.5 1,649,429 + +1.2 1,649,430 - +0.1 1,649,430 - +1.2 1,649,430 - -0.0 1,649,452 + +1.5 1,649,453 - +0.1 1,649,643 - ABZR87_RS07775 0.23 -0.9 1,649,728 + ABZR87_RS07775 0.31 -0.4 1,649,729 - ABZR87_RS07775 0.31 -0.2 1,649,801 - ABZR87_RS07775 0.39 +0.2 1,649,801 - ABZR87_RS07775 0.39 -0.4 1,649,827 + ABZR87_RS07775 0.41 +2.4 1,649,827 + ABZR87_RS07775 0.41 -0.4 1,649,828 - ABZR87_RS07775 0.41 -0.8 1,649,962 + ABZR87_RS07775 0.55 -0.3 1,649,963 - ABZR87_RS07775 0.55 -0.1 1,649,963 - ABZR87_RS07775 0.55 +0.5 1,649,963 - ABZR87_RS07775 0.55 +0.1 1,650,028 + ABZR87_RS07775 0.61 -1.4 1,650,074 + ABZR87_RS07775 0.66 -0.4 1,650,075 - ABZR87_RS07775 0.66 -0.5 1,650,075 - ABZR87_RS07775 0.66 -0.3 1,650,133 + ABZR87_RS07775 0.72 +0.9 1,650,134 - ABZR87_RS07775 0.72 +0.1 1,650,217 + ABZR87_RS07775 0.80 -0.9 1,650,217 + ABZR87_RS07775 0.80 -0.4 1,650,217 + ABZR87_RS07775 0.80 +0.5 1,650,218 - ABZR87_RS07775 0.81 +0.2 1,650,746 + ABZR87_RS07780 0.23 -1.0 1,650,746 + ABZR87_RS07780 0.23 +0.3 1,650,747 - ABZR87_RS07780 0.23 +0.6 1,650,788 + ABZR87_RS07780 0.26 -0.2 1,650,790 + ABZR87_RS07780 0.26 -0.1 1,650,791 - ABZR87_RS07780 0.26 +0.2 1,650,791 - ABZR87_RS07780 0.26 +0.3 1,650,791 - ABZR87_RS07780 0.26 +0.0 1,650,791 - ABZR87_RS07780 0.26 -0.1 1,650,946 + ABZR87_RS07780 0.37 -0.0 1,650,947 - ABZR87_RS07780 0.38 +0.8 1,650,947 - ABZR87_RS07780 0.38 -1.1 1,651,049 - ABZR87_RS07780 0.45 +0.1 1,651,049 - ABZR87_RS07780 0.45 +0.4 1,651,049 - ABZR87_RS07780 0.45 +0.9 1,651,049 - ABZR87_RS07780 0.45 -0.1 1,651,096 + ABZR87_RS07780 0.48 +0.0 1,651,132 + ABZR87_RS07780 0.51 -0.3 1,651,133 - ABZR87_RS07780 0.51 -1.1 1,651,133 - ABZR87_RS07780 0.51 +0.3 1,651,133 - ABZR87_RS07780 0.51 +0.7 1,651,189 + ABZR87_RS07780 0.55 -0.7 1,651,189 + ABZR87_RS07780 0.55 +1.2 1,651,189 + ABZR87_RS07780 0.55 +0.3 1,651,189 + ABZR87_RS07780 0.55 -0.4 1,651,189 + ABZR87_RS07780 0.55 -0.7 1,651,190 - ABZR87_RS07780 0.55 -0.2 1,651,190 - ABZR87_RS07780 0.55 +0.2 1,651,190 - ABZR87_RS07780 0.55 +0.6 1,651,190 - ABZR87_RS07780 0.55 +0.3 1,651,190 - ABZR87_RS07780 0.55 -0.3 1,651,319 - ABZR87_RS07780 0.65 -0.1 1,651,327 + ABZR87_RS07780 0.65 -0.4 1,651,327 + ABZR87_RS07780 0.65 +0.5
Or see this region's nucleotide sequence